RNA id: XM_043249936.1


Basic Information

Item Value
RNA id XM_043249936.1
length 3951
RNA type mRNA
GC content 0.48
exon number 24
gene id prdm15
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13060712 ~ 13070717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGCGGATTGGAACCCGGAGTCAGGATTCACTAAATGTGTAGACGTTTGGAAAACAGGAGGTCAGAATGGCAGCGCAGACACCAGATGAGTTTATTTGGTGTGAGGACTGCGGTCAGTACCATGACTCTGAGTGTCCTGAGCTGGGGCCTGTCGTCACGGTGAAGGACTCATTTGTTCTGAGTCGGGCACGGTCATCTTTACCAGACAGCTTGGAGATCAGGTCGGCTGAGGAGGGCAAAGaaggtgtgtttgtgctcaGTCGACTGGTTAAGAGGACTCGATTTGGCCCGTTTGAGGCCAAGAGGGTTTCAAGCCTTCAAATTGAGGGGCCATTTCCTTTAAAGATATTTCAAAAGGATGGCTCAGTGGTGTTCTTCGACACGTTCAATGAAGACGACTGTAACTGGATGATGTTGGTTCGGCCCGCTGCAGACCACAAACACCAGAATCTGACGGCATACCAGCAAGATGATGAAGTTTACTTTAATACATCACAGGATGTCCTGCCCGGAACAGAGCTTAGAGTCTGGTATGGAgctttttatgccaaaaaaatgGACCGGCCTATTCTTAGGCCGGCTGCACTTCCACCTCCACCAGAAATGGTGTCCAACAAACCTGGAGTCCCTCCAGGAAAGGGGCCATCAGCAGGGACCCTTCCTGTCCCGGACCTGCTGCTTTGCCAAACCCCTGTGCCTGCCGCAGACCCATCTGTCCAGCAGGTCGCAGAGGCAGTATCCCAAAACATCACAGCCAGCGTTACCCCTGCCCCGCCAGAGCCAGCCAGAAAACAAGGCAGGCCGCGACGAACAAAAGCACAGAGACCTGCACCGAGTGAAACGGCTGATTCCAATCAAGTAGAAGCCTCTGTTCCTGCGTCCGGTGAGCAGACTCTCACTACTGTTGCTCCTGACGTTCCTCTGTCTGTACTGGATGTCCAGGAGGTGGTTGCCGGAGACGGCCCGCCACTTAAAACATCTCGGGTCACACGCTCCCCCATCTCCACTGGGAAACCTGGTATGAGGAAGAGATCTCTGCGGCAGGGAGGTGATCATAAAAGAGTTTACCAGTGCTGCCTCTGCAGTAAGGTGTTTCAGAACAGCAGCAACCTCAACCGACACATCCGATCCCACGGAGATAAATGTTTTAAGTGTGATGAGTGTGACAAGATGTTCAGTCGAAAGGAGAGTCTTAAGCAGCATATATCATACAAACACAGCAAGAATGAGccTGACATAGAGTACAGATACAAATGTGCAACCTGTGAGAAATCCTTCAGAGTGGAAAATGCCTTAAGATTTCATAACTGCAGGACAGATGACAAAACGTTCCAGTGTGAAATATGCTCAAGATTTTTCTCCACTAACAGCAATTTGTCCAAGCACAAAAAGAAACACGGAGAGAAACTCTACGCATGTGAAATCTGCAATAAGATGTTCTACCGCAAAGATGTCATGCAGGACCACCAGAGGCGGCACGTTGTTGGCCCGAAGAACATGAAACGAGAGGAGCTTGAAGCGAATGGGGAGGAGGGAAGCAAATACAGGAAGGAGCCTTCGGAGTGCCCCATTTGTGGAAAGGTGTTTTCCTGTCGGAgtaacatgaacaaacacttACTAACCCACGGGGACAAGAAATACACCTGTGAGATCTGCGGGCGCAAATTTTTCCGAGTGGATGTGCTGAGGGATCACATTCATGTACACTTTAAGgaCATTGCATTAATGGAcgagcaggagagagaggacTTCATTAAGAAGATTGGCATCTCTATGGAAGAGAGTGAGGATAGCTCTGATGAGGAAGATGAGAAGAACGACCCTGAACATCACAAATACAGCTGCAAGAAATGTCAGGTGACATTCGCCAAGGGTCGTGACTACTTGAAACACATAATGGACATGCATAAGGAAAAAGGTTACAACTGCACCATGTGTAACCGGCGTTTTGCTCTGAAGGCCACCTACAACGCCCACCTGGTCATCCACCGAGACCACCTGCCTGATCCTGCAGTACAGAAATATATTCATCCGTGTGACATGTGCGGACGGATTTTCAACAGCATCGGCAACCTGGAGAGGCACAAAATCATCCACACAGGAGTAAAGAGCCATTGCTGTGATCAGTGCGGAAAGTCATTCGCCAGGAAAGACATGTTAAAGGAACATCTAAGAGTCCATGACAATGTCAGAGACTTCCTGTGTGCAGAATGTGGGAAAGGCATGAAGACGAAACACGCTCTACGGCATCATATGAAGCTTCACAAAGGAATTAAAGAGTATGAATGCAAAGAGTGTAACCGCAAATTCGCCCAGAAAGTTAACATGCTAAAGCATTACAAAAGACACACGGGCACAAAGGACTTTATGTGTGAACTGTGCGGCAAGACTTTTAGTGAGAGAAACACAATGGAGACGCACAAGCTTATTCATACAGTTGGAAAGACATTTTCTTGCGCCGTCTGTGACAAGAAGTACGTTACGCAGTATATGCTGCAGAAACACATGCAGCTGACCCATGACAAGGTGGAGGCTCAGAGCTGTCATCTGTGTGGCACCAAAGTCTCCACACGAGCCTCCATGAACCGCCACATGCGCCGCAAACACCCCGAGCAGATTGTGACAGTACGACTGGGTGACTTTGATCTTCAAGAACCCTCAACAGTTGACGCCTCCACCATCAGTATTTCACAGCCTTCTCTGGCCCTGGAGAAAGGCTCTCTCACTGGAGAAAAAGTCTCCAGGAACTCCAATCCCTCCAAGAAGAGGGCAAAAAACCTGCCTCATGAGCCTGAACTGTCTGATTCAGACGAGTACGCTGACTTCACCAGCAAAACCACTGAGTTCTCCACCACTGTAGGAGATGAAACCAACTCTGCTGTGCAGAGTATTCAGCAGgtggtAGTGCTGGCTGACCCCAGCGCCCCTCCAGCCCCCTCCAGCTCGGTCAGTTTGACCAACATCACCGTGACCCCCATCACCACACCAGCTCCTGCACAGTTCAGCAACCTGCAGCCCGTCGCTGTCGGCCACCTGGCTCCGAGTGATCGCCCCCTCACCCTGGACAGCTCCATCCTCACTGTGACATTCGATGCTGTCAGCGGCTCGGCGATGCTCCACAACCGGCCGGCCGATCTCCAGTCAGAGGCGGTGGGATCCGCGGGGGCCGCGGCGTCACAGCCGGTTGCGCATTTTATCAACCTCACTACCTTTGTCAACCCGATCTCCCACCAGCTGGAGCAGCCCGCTCTAACCTGGAGGCCCGTCGCTCCGACCGACGGAGCTCACCCGACCGCCATAGATGAAACCCAGACAGATTCTCAGGCCCCCCCAGAACAGACACAAACACTGCCAGAACAAAGGCATCAGATTCAGCCGCAGGTCACAGGACCTCCCCAACAACAGACCGCCGCAGCACCACAGATGTTCAGCTACTGAGAAATTAGGTATATGATATCATTTATAGCTAAGATCCAATTTTGGAAGTTGGTTAAGAATTAGGACCAATATGATGAAATGTGATGGTTTTGTTATTAACTGAGCACTTCTTGTTAAAAGTGTGACTGTGACTTTAAGGGCAGTGCAAGACTTTTGTTTGAATTTAATACAAATCACTGgacaatttaaacaaattaagattCTGGAGGTGATTATCTtcttttttaggttttatttttttaaatgaatgcatgaaatatcTGATTATGATTTAAGAGAAAGCGGGGACCTTAGTTTCTTAAAACAGTAACTCAGATTATATTTGTTGTATGATGTTATGTTGTAGCACCTGTGGATTGATGCTGTCAGGAATGAATTGATATAAATGTCATACATGGATAAACTGTATTGTAAGTGCTAACtggaaatattttctattttttgtttcatttttttttaaaaatgggttGGCCTTCTATTAAATGCATGTATGGACTTGTCTCTAAGGTGT

Function

GO: NA

KEGG:

id description
K24647 PRDM15; PR domain zinc finger protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114171 lncRNA downstream 25127 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 179977 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 182059 12874551 ~ 12878653 (-) True G77135
TU113780 lncRNA downstream 381494 12679007 ~ 12679218 (-) False uvrag
TU113778 lncRNA downstream 382087 12678367 ~ 12678625 (-) True G76912
TU114230 lncRNA upstream 139899 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 242477 13313194 ~ 13315574 (-) True G77220
TU114273 lncRNA upstream 257925 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 415550 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 430086 13500803 ~ 13505849 (-) False dclk1a
XM_043250777.1 mRNA downstream 577 13056071 ~ 13060135 (-) True tbl2
XM_043250779.1 mRNA downstream 5336 13052114 ~ 13055376 (-) True bcl7ba
XM_043251067.1 mRNA downstream 9349 13036034 ~ 13051363 (-) True LOC122353147
XM_043250451.1 mRNA downstream 31903 12915183 ~ 13028809 (-) False cux1a
XM_043250738.1 mRNA upstream 674 13071391 ~ 13084252 (-) True LOC122352956
XM_043251152.1 mRNA upstream 23866 13094583 ~ 13098870 (-) True ska2
XM_043250502.1 mRNA upstream 81238 13151955 ~ 13156088 (-) True il2rga
XM_043250501.1 mRNA upstream 85427 13156144 ~ 13161519 (-) True si:dkey-18a10.3
XM_043250500.1 mRNA upstream 93992 13164709 ~ 13169215 (-) True eva1c
TU113815 other downstream 271622 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 1855486 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 468012 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 572574 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 735402 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1131545 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1131545 14202262 ~ 14202837 (-) False G77440

Expression Profile