RNA id: XM_043249941.1


Basic Information

Item Value
RNA id XM_043249941.1
length 4535
RNA type mRNA
GC content 0.42
exon number 13
gene id rps6kb1a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10972881 ~ 10983738 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTTTGTATCCCTAGTACAGCCACTGACCTCAGCTACAAACTTCCGGAGTAAAACACAACACGTTcgtgtgtttaaataaacaaaacgtcGATTTAGTTTGTCGACAGTTGTTTTCACGCGTTCCGGAGCATGCGCGCTGACGCTCTGTGAAACCCGCCGTTCCGCTCGCCGTGATTATCGTTCACCGGTAGTTAATCTCCGTAGGAATACGTCGCGTACCGGAGCCGGTTATGGCGTCGGCGTGTCGTGCCGGACCATGAGGTGTCCGCGTTCGTCGTTGTCGCAGTATTTGAGCGCGTAAAGAGACCGCGGCCATGGCTGGTGTGTTTGATATCGACCTCGACCCGCCGGAGGACAACGTGTCAGACGAGGAGCTCGCCGACGGGGCTAAGAGTAATGAATTCATGGACCAGTGCGGTGGCTTTGAATTCATGGAAGACTGCGAGAAGTTCGAGATCTCGGAGAATAGTGTGAATCAAGGCACGGAGCAGATCCGTCCGGAATGTTTCGAGTTGCTTCGTGTTTTGGGTAAAGGAGGATATGGGAAGGTTTTTCAAGTTCGCAAGGTATCAGGGGCAGATTCTGGGAAGATATTCGCCATGAAGGTCTTGAAAAAGGCCATGATCGTTCGCAATGCAAAGGACACTGCTCATACGAAAGCAGAAAGGAGCATCCTAGAGGAAGTTAAGCACCCCTTTATTGTCGACCTTATATATGCCTTTCAGACAGGAGGCAAACTTTACCTCATCCTGGAGTACCTAAGCGGTGGAGAACTGTTCATGCAGCTGGAAAGGGAGGGGATCTTCTTGGAGGATACCGCCTGTTTTTACCTGGCAGAGATTTCCATGGCCTTGGGTCACCTTCACCAGAAAGGCATTATCTACAGAGATCTGAAGCCAGAGAACATCATGCTCAATAACAAtgGTCATGTTAAGCTGACAGACTTCGGACTCTGTAAGGAGTCGATCCACGATGGTACCGTCACACACACCTTCTGTGGAACCATAGAGTATATGGCACCAGAAATCCTCATGAGAAGCGGCCATAACCGAGCTGTGGACTGGTGGAGTCTGGGAGCTCTGATGTATGACATGCTAACAGGAGCTCCGCCATTCACCGCAGAGAATCGGAAAAAAACCATAGACAGAATTCTAAAGTGCAAACTGAACCTTCCACCTTACCTCACCCAAGAAGCACGAGACCTTCTGAAAAAGCGATCAGCAGATGATGTTAGCCAGTTTGACTCCAGGTTCACTAGTCAGACTCCCGTGGACAGTCCTGACGACTCGACACTCAGCGAAAGCGCCAACCAAGTCTTCCTGGGCTTTACGTACATCGCTCCATCTGTGCTCGAAAACATCAACGAGAAGTTCACTTTTGAGCCAAAATCCCGTTCACCTCGCAAGCTTCTGGGAAGCCCAAGAACGCCAGTGAgCCCTATGAAGGCTGAAGGGGAAGACGGTTGGTCTCGAGGTCCACCCTTCCCAGAAGTGCCCTCAACCACCTCCTCTCTCCTGCCGCCCACTGATACGCCCATGGAGGTGTCTAATGTGGAGCAGATGGACGTTAGCAGCAACATGGAGGTGTCAGCCCCTCTCCCCATCAAAAAACCATCAAACACGGGCTTGTTCGTGAAACCGGCTCAACCAGCAGGCGGCAGGAGACCCAAGCATTTAAGGATGAATCGTTgattaacattttgtattttaggaATTTATCAAATTACCCAAAAGGCCTTTCTGCACCCAGTTTGTGTCTCTTAAACACTTGCCGCACCAGTGTGCTTCATGCAAGCATGCAGAGCTTGTCCAGAACAAAGCCTGTGACCTCTCTCTGCTTGCACTACGGTGAGGTGGTCTGCTGCTTGCtttgaaaaagagagagcaCCTTGCACTTCGGACGACTCTGAGCATGAATTTCACAGTTTATCTTTTATATACCATGTTCATACAAAACATAAGGGATAACGCATAGTATGTTCTGTTGTATATTTGAAGTTTGATCTGGGAcgttgagttttttttgttttttgcttgaTTGTGTTCTCTAATAGTATTTAtatggatagttcacccagaaaataTACGTTCTGTCATGCACTCACCTTTACGTTATTCCAAAAAGATAtaaatcgcttttttttttcttctgtggaacacaagaTTTTCTCAGCGTTTTGCTGTTTAGGTTTTGATTTTCATTATGTAGGCAAAAACTGTTGAATTGTGCTCCAAAATGTCTTCTGTTGTGGTTCACAGAAGAACAGAAATCctgtttggaaagacatgaaggtaaatgatgacacaattttAATTGTTGGGTGAATTGTCTTTTTATAATGGCGAGAAGAACCAGGACTGCATTCTGAAGGATTTgcaacatttttgatttatcAATCAATGTTAGGACGGCAAGAATCGCAGATGTAGGAAAATTGGAGAAATATAAGCAGAATCTATACCAATGATAAACtatgaagtaaaaatataagctgttcttttttttttcatcagtgttAGATGACCTCAAGGCATTATTCTCCTAATTAAGTATAAAATTCATACTTTCAGGTATGACTCTACCTGCATTCTGAGCATCAAATCACTGTTTTTCTGAccaaagaatattaaaaatactagaTTACTATATAATACTGGACAATTCCTCATAATACAGAGTACAGTTACTCTTTCTAAGCCACATCCAAAAAATACCAGTAATACTGATACGCTGTCAACTATCTGAAAACTATTGAGTTTAGacaaaataatgtcatttttaaccTTGGTATTGTAGACACCAAGGCGAGTTTTGAAATGGTTTCCATATCagtaattgatttttttttttgacccattttttttattttttagatgcCATATAGTTTTGTAAACTATGCAAATGATTTATTCTTTATATAgtcaaaaatgctgttttagccGGATTAGTCACATGAACACATGCCAGCCCCCTTTAAAGGTTATTATTTAGTACTTCTTTCTACAATGGTGTTGGAGTCAAAACGATTAAATTATTCTCTGGGACTTTAAAAATACTGGGacttaaatatgttttcagGATGTGCGCTGTACAATAGAAAACCTCtggattatatattattgttctattgaattttgattaaatatgctTGGATATATGTGGTTAAGGGGAATGAAGATGTTCTAGATCAATATAGAGttataaaagtgtaataaagtggtaaatctaaaacaaaaaaaaacagtatttcatTGCTGTACATAGACATGATTCTTCATGAATGTTGGTGCTCTTTCCTTGTATTATACAGTATGAATAGTATGATGTGACTCCTTGAAGTGGTCGACACTGAATCTGCATCTTGTTAAGAAGTGCTGTATGTCAGTCATCTTGGGTGGTTCTCTGTATCATGTTTCACAGGCATTCCTGTGCTCATAGAAGTGTTATTGTTATCGATGAACCTCTGTGCGTGAGGCTGCGATTGCGTTTGTGTGACCGCATTTAAACCAATTTCTGAACGACACACTGTTTTCCCACGGGAATGTAAAATaggcttgttttctgtttgagaaCATTGTTCTGGCGTGACGCTGTAACCTGTTGATTGAATGCGATGTTAACCTCACATCCTCAAGCTCTAATTTCCGTTGTGTAGATTGTAATTGCGGTTGGACATTAGGAGGCCATTGCTCTGATTGAACTGTCTGGACTTTGCAGCAGTTTCCATCAAGCCAATAATTGGGTGTACTATGCACAGGAAGCATGATTGTGAATATCTTAAGCTGTCAGATACCGTGCCTACTGATAAACAACAGCCTGCTGTGCCGTGGCAGTTAACAGCCAGTAATGGCTTCATATGTGAAAGCCTTTGATTTTGAAATCTGTGCGAGACCAGCAGCTTAATTAAATTGCCTCTTAACTGGTACTTTGACTGGGGGAAGCATCCCATTTTGCCTTCTCATTCACAAATATCGACCGTTTATTCTATGCAATGCTGGCTGAGAGAGAGGGCTCTGTAATGTTGTGTAAATGGCTTTATGTATCACTTGTGTCAGTCTGAGGAGTTGGATATTGACCATGAGCCCAGTCCATATAATCACTAGACTCGTGGCGCAGTCATGTTGGAATATTAAGATGTAACTTGGTGCTATGTGTTGATGGTCCGGTTTTTTTATCTTCGCTATTATATGTCCTTTATAAAAACGTAACGTGGTGTGTCGTTGCGCTTTAGAGATGAACTGAATGTGAACTTCAGTGAAATCAACGGTGCTTCAGGTTAGAGTTctaaagtgaaaagaaaatgcCTGTGAAAAGAGTTGAGATGCGGATCTGGTTGCATTtcgcattttaaatgcaaatgctaGACGTTTATTAGACAGTGGCACTTTGGTTTAAACGATGAACGGATGTAAAGTACGAAATGGCAAGATTGTTTCTAATCTGGTGTTTTGTGATTTGCTCgcttatttgaacatttttcatttaatttgagtGAATTCTACGAAATCAATAAAGTTGAATTCGAGCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251956.1 lncRNA downstream 22414 10947032 ~ 10950467 (-) True LOC122353057
TU113376 lncRNA downstream 100794 10871806 ~ 10872087 (-) True G76618
TU113180 lncRNA downstream 512482 10436192 ~ 10460399 (-) True G76489
TU113191 lncRNA downstream 516369 10455591 ~ 10456512 (-) True G76493
TU113174 lncRNA downstream 527725 10424615 ~ 10445156 (-) True G76488
TU113383 lncRNA upstream 2662 10986399 ~ 10987235 (-) True G76622
TU113387 lncRNA upstream 2662 10986399 ~ 10987235 (-) False G76622
TU113402 lncRNA upstream 10481 10994218 ~ 10994426 (-) True G76632
XR_006251883.1 lncRNA upstream 42332 11026069 ~ 11044853 (-) True LOC122352521
XR_006251882.1 lncRNA upstream 51955 11035692 ~ 11038800 (-) True LOC122352520
XM_043250187.1 mRNA downstream 27166 10892793 ~ 10945715 (-) True med13a
XM_043251066.1 mRNA downstream 81117 10873812 ~ 10891764 (-) False ints2
XM_043251065.1 mRNA downstream 81117 10873812 ~ 10891764 (-) True ints2
XM_043250825.1 mRNA downstream 209986 10481653 ~ 10762895 (-) False auts2a
XM_043249946.1 mRNA upstream 62670 11046407 ~ 11079418 (-) False cltca
XM_043249945.1 mRNA upstream 62670 11046407 ~ 11079418 (-) True cltca
XM_043249944.1 mRNA upstream 62670 11046407 ~ 11073726 (-) False cltca
XM_043249943.1 mRNA upstream 62670 11046407 ~ 11073726 (-) False cltca
XM_043249947.1 mRNA upstream 97902 11081639 ~ 11138691 (-) True LOC122352515
TU113196 other downstream 492692 10478059 ~ 10480189 (-) True G76498
TU113101 other downstream 589572 10380096 ~ 10383309 (-) True G76438
TU113103 other downstream 589572 10380096 ~ 10383309 (-) False G76438
TU113102 other downstream 591834 10380096 ~ 10381047 (-) False G76438
TU113078 other downstream 695180 10267354 ~ 10277701 (-) True fgf13b
TU113393 other upstream 33373 11017110 ~ 11038731 (-) True G76625
XR_006251915.1 other upstream 192832 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other upstream 192832 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other upstream 192832 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other upstream 192832 11176569 ~ 11205226 (-) False LOC122352715

Expression Profile