RNA id: XM_043249946.1


Basic Information

Item Value
RNA id XM_043249946.1
length 6891
RNA type mRNA
GC content 0.48
exon number 31
gene id cltca
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11046407 ~ 11079418 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCTCCACCGGACGGGTTCCGCCGCCATTGCAGGTTTCTAGAGTTCCTCTCAGCGGCGGTTGACATTCTGGAGTTGAAGCGCCTCATTTACATTCAGCGGGCGACTAGAGTAACCTAACGCATTCCCGGTTCATCtgcccccccaaaaaacacaagACCACCTCCATTCATCCCCGGCTCTGGAGTAGTTTAGATTAGGCAGAAAGAATAGCAGGAATTAGAGAGGAAAGcgaagaggaaccaccaccatCATGGCTCAAATCCTGCCCATCAGATTCCAGGAACACCTGCAGCTCCAAAATTTAGGGATCAACCCAGCCAACATTGGGTTCAGCACCCTGACGATGGAGTCTGATAAGTTCATCTGTATCCGGGAGAAGGTTGGAGAACAGGCCCAAGTGGTGATCATTGACATGGCGGACCCAAACACCCCCATCCGCAGGCCCATCTCTGCAGATAGCGCCATCATGAACCCTGCGAGCAAAGTCATAGCACTTAAAGCTGCCAAAACCCTTCAGATCTTTAACATCGAGATGAAGAGTAAGATGAAAGCCCACACCATGACTGATGATGTGACTTTCTGGAAGTGGATCTCTCTTAACACCATTGCCCTGGTGACCGATAACGCCGTCTATCATTGGAGCATGGAGGGAGACTCTCAACCGGTCAAAGTGTTTGACAGACATTCCAGCCTGGCAGGGTGTCAAATCATCAACTACCGCACCGATGCCAAGCAGAAGTGGCTGCTACTCATTGGCATTTCTGCTCAGCAAAACCGAGTTGTTGGTGCCATGCAGCTCTACTCGGTTGAAAGGAAGGTGTCACAGCCTATCGAGGGTCATGCTGCTGGCTTTGGACAGTTTAAAATGGAGGGAAATGCAGAAGAATCCACTCTTTTCTGTTTTGCTGTGCGAGGTCAGGCAGGAGGAAAGCTTCACATTATTGAAGTAGGGACGCCACCAACCGGCAACCAGCCATTCCCTAAAAAAGCTGTGGATGTGTTTTTCCCTCCAGAAGCACAGAATGACTTCCCTGTAGCCATGCAGATCAGCTCCAAACAGGACGTCGTATTTCTCATCACTAAATACGGTTACATTCATCTGTATGACCTGGAGACAGGCACCTGCATCTACATGAACAGAATCAGCGGAGAGACCATTTTTGTGACGGCACCCCACGAAGCCACATCTGGAATCATCGGTGTGAACAGAAAAGGACAGgtTTTGTCAGTGTGTGTTGAGGAGGAGAATATCATCCAGTACATCACCAATGTGCTGCAGAATCCAGACCTGGCTTTACGGATGGCGGTCCGAAATAATCTGGCAGGAGCCGAAGAGCTGTTTGCCCGCAAGTTTAACAACCTCTTCGCTGCCGGAAACTACTCAGAGGCAGCTAAAGTGGCCGCTAATGCTCCAAAGGGTATCCTGCGCACTCCTGACACCATCCGCCGGTTCCAGGGTGTCCCTGCCCAGCCCGGCCAGACATCCCCACTCCTGCAGTATTTTGGGATCTTGCTGGACCAGGGCCAGCTCAACAAGTTTGAGTCTCTGGAGCTGTGCAGACCCGTCCTTCAGCAGGGCCGCAAACAGCTTCTGGAGAAATGGCTGAAGGAGGATAAGCTTGAATGCTCAGAGGAGTTGGGCGATTTGGTGAAATCTGTGGACCCCACTCTTGCTCTTAGTGTCTACCTGAGGGCCAACGTACCCAACAAAGTCATTCAGTGTTTCGCAGAAACCGGACAGTTTCCCAAAATTGTACTGTATGCCAAAAAGGTGGGCTACACTCCAGACTGGATCTTCCTGCTGAGGAACGTGATGCGGATCAGTCCGGATCAGGGTCTGCAGTTTGCTCAGATGCTTGTTCAGGATGAGGAACCTCTTGCTGACATCACACAGATCGTTGACGTGTTTATGGAGTATAACCTGGTCCAGCAGTGCACGTCTTTCCTTTTGGATGCTCTGAAAAACAACCGTCCATCAGAAGGTCCACTGCAGACCCGTCTGCTGGAGATGAACCTGATGCATGCGCCACAGGTTGCAGATGCCATCCTAGGAAATCAGATGTTCACTAACTACGATCGTGCCCACATTGCCCAGCTGTGTGAGAAAGCAGGGCTTCTGCAGAGGGCTTTAGAGCACTATACTGACCTGTACGACATCAAACGAGCTGtcgtacacacacacctgctcaaCCCAGAGTGGCTGGTGAACTTTTTTGGTGCTCTGTCAGTGGAGGACTCTCTGGAGTGTCTAAGAGCCATGCTATCTGCTAACATCAGGCAGAACCTTCAGATCTGTGTCCAGGTGGCCTCCAAGTATCACGAGCAGCTGACTACCCAGTCCCTCACTGAACTTTTTGAGTCTTTCAAGAGTTTTGAGGGTCTGTTCTACTTCCTTGGCTCGATTGTGAACTTCAGCCAGGACCCAGAGGTGCATTTCAAATACATCCAGGCCGCATGCAAGACGGGCCAAATCAAAGAGGTGGAGCGGATCTGTCGGGAAAGCAACTGCTATGACCCTGAACGTGTCAAGAACTTTCTTAAGGAAGCTAAACTCACCGACCAGCTGCCCCTCATTATTGTGTGTGATCGCTTCGACTTCGTCCATGATCTTGTACTCTATCTGTACCGAAACAACCTGCAGAAGTACATCGAAATCTATGTGCAAAAGGTGAACCCATGCCGTCTTCCTGTGGTAATTGGAGGTCTCCTGGATGTTGACTGCTCCGAGGACGTCATCAAAAACCTGATCTTGGTTGTGCGGGGCCAGTTTTCCACCGATGAGCTGGTGGCAGAAGTGGAGAAGAGAAACAGaCTGAAGCTGTTGTTGCCATGGCTGGAGTCTCGTATCCACGAGGGCTGTGAGGAGCCAGCTACCCACAATGCCTTGGCCAAGATCTACATTGACAGCAACAACCACCCAGAACGCTTCCTGCGGGAAAACCCATACTACGACAGCCGTGTGGTGGGGAAATACTGCGAGAAAAGAGACCCTCACCTGGCCTGTGTGGCCTACGAGAGAGGACAGTGCGACCAGGAGCTCATCAACGTGTGCAATGAGAACTCGCTGTTCAAGAGCTTGTCCCGTTACCTGGTGCGCCGCAGAGACCCGGAGCTCTGGGCTAGTGTGCTTGTGGAGACCAATCCCTACAGAAGGCCCCTTATTGACCagGTGGTGCAGACAGCCCTGTCAGAGACTCAGGACCCAGAGGAGGTGTCCGTCACAGTGAAGGCCTTCATGACTGCTGACCTGCCCAATGAACTCATTGAGCTGCTGGAAAAGATCGTCCTGGACAACTCTGTGTTTAGTGAACACAGAAACCTGCAGAACCTGCTCATCCTGACAGCCATCAAAGCGGACCGCACCCGTGTCATGGAATACATCAACCGTCTGGACAATTACGACGCCCCAGACATCGCCAACATCGCCATCAGCAGCGAGCTGTTCGAGGAGGCATTTGCTATCTTCAGGAAGTTTGATGTCAACACCTCTGCAGTGCAGGTTCTGATTGAGCACATTGGTAATCTGGACCGGGCTTATGAGTTTGCGGAACGCTGTAATGAACCTGCTGTGTGGAGCCAGCTGGCGAAGGCTCAGCTGCAAAAGGGTCTTGTCAAAGAGTCTATTGACTCCTACATCAAGGCTGATGACCCTTCGGCTTACATGGAGGTGGTTCAGGTCGCTTCCGATAATGGCAACTGGGAGGATCTGGTGAAGTTTCTACAGATGGCTAGAAAGAAGGCCAGAGAGTCATATGTGGAGACAGAGCTGATCTTCGCACTGGCCAAAACCAACCGTCTCGCTGAACTGGAGGAGTTTATAAATGGACCAAATAATGCACACATCCAGCAGGTTGGAGATCGCTGCTATGACGAGAAGATGTACGAGGCTGCCAAACTTCTGTACAATAACGTCTCCAACTTCGGCCGCTTGGCTTCCACCCTGGTCCACTTGGGCGAGTATCAAGCTGCTGTGGACGGTGCCCGCAAAGCTAACAGTACTCGCACATGGAAGGAGGTGTGCTTCGCTTGTGTGGATGGGAAAGAGTTCAGATTGGCTCAGATATGCGGCCTTCACATCGTGGTTCACGCCGATGAACTAGAAGAGCTCATCAATTATTACCAGGACCGTGGCTACTTCGAGGAGCTGATCACCATGCTGGAGGCAGCGCTGGGGCTGGAGCGCGCTCACATGGGCATGTTCACAGAGCTGGCCATCCTCTACTCTAAATTCAAACCACAGAAGATGAGGGAACACCTGGAACTCTTCTGGTCCAGAGTCAACATCCCAAAGgtccTGAGGGCCGTGGAGCAGGCTCACCTGTGGGCAGAGCTTGTTTTCCTCTACGACAAGTATGAAGAATATGACAACGCCATCATCACCATGATGAGCCATCCTTCAGATGCCTGGAAGGAGGGACAGTTCAAGGACATCATTACCAAGgtGGCCAACGTGGAACTGTACTACAAAGCAATTCAGTTTTATCTGGAGTTCAAGCCCTTGTTACTGAATGACCTGCTCATAGTTCTTTCCCCAAGACTGGATCACTCTCGTGCCGTCAGTTTCTTCAGCAAGgTTAAGCAGCTTCCTCTCGTCAAGCCTTACCTACGGTCAGTACAAAACCACAACAACAAGTCTGTCAATGAAGCACTTAACAACCTCTTCATCTCCGAGGAGGACTATCAGGCGCTCAGGACATCTATAGATGCATACGATAACTTTGACAACATCTCACTGGCTCAGCGTCTGGAGAAACATGAGCTGATAGAGTTCAGGAGAATTGCTGCTTACCTCTTCAAGGGCAACAACCGATGGAAGCAGAGCGTGGAGCTGTGCAAGAAAGACAAACTTTACAAGGATGCCATGCAGTACGCGTCTGAGTCGAAGGACATAGAGCTGGCCGAGGAGCTGCTGCAGTGGTTCCTTCAGGAAGATAAGAAGGAGTGTTTCGCCGCTTGCCTCTTCACCTGCTATGACCTGCTCAGGCCTGATGTGGTGCTGGAGACGGCATGGAGGCACAACATCATGGACTTTGCCATGCCTTACTTCATCCAGGTGATGAGGGAATACCTCAGCAAGGTGGATAAGCTGGAGACCTCTGAATCCTTGAGGAAAGAAGAGGAGCAGGCGACAGAGACTCAACCCATTGTTTATGGCACGCCTCAGCTCATGCTGACAGCAGGCCCCAGTGTGCCTGTCCCCCCGCAGCAGGCTTACGGCTACGGGTACACAGCAGCGCCTGGCTACCCCCAGGCTCCTCAGGCACAGCCGGGTTTCGGTTACGGCATGTAAGGACCTCCCCGTTTCCCGCTTGCCCCTCTTCCAGCTGCCGCTTGGTTCGGTCCAGCACCCCtacagatctctctctctctctctctctcaatcctCCACCAGTCCGACTCTACCACTTTGTGCTCACAATGGGGGATTTGAGCAAATGTTATTCTTttactttccttttttctttttttttttaaacgatgttaaatgtttttgtttaacatgtttttctttataccATCATGAAGGACTTTATTTCTATATTGTCAGAGATTatcaacaattatttttttcacattccaGATACTTACTAGATTTAATTTTCCTGTCAGTTCTGTCAATGAAAGGGGAACGGTGTCTGCAGTGAGGATACTTGCGGGAGAAGCAAGTCagcttaattaaaatgacaaaacaaattcAGATTTGCACTCCGTAGTCAGAGAAAAACAATGTATCATTTTGGTGTGTGTGAACAACTTGTTCAGTCTGTCAgcatttaatattgtatattccagaaaataaaataaaattgagaaaCTACAGCCTCTACAAACAAACACTACTCAGTACCAGTAATTCAACGTGGGTGCGTAgctctcaaaatatatatatatataaaagaaaaagcattcaTATGGCAACTTCAAACCTTTTCCCTGACCTATGCAGGTtctccgattttttttttttccatatgaaaaacaaacttttgttGTGCAGTAACCCGTACTCATTGTGTGGGACCATCCATCTGAGGAGGgataatgattaaaatatatataaatatatgcggCTCTCCACACGTGTGTGTTTTACTAACCTTACCTCTCTGTGCTGCagcgtgtatgtgtgcgtgtgtgtgtgtgtgtgtgtgtatgctggtTGTTGTGATGTTTAGGTCACTGTACGGCACCGAAGTGAGACTAGAAAGCCAGTTTATCCTGCCAGTTATTCCTAAACTCAATTTACCCTTTGTTTGTAAAGAAGTGAAATCAAAATCGTTTAAGAACGAAGATTAAACTAACTCCGTTTTGTCCTGTACTCAGTTTTCACTGAGTTAAGAATAATCATACACGTATATTGTAGTGATCTGATTGTGCACAAAGAGAATGAGATTCCCAGAATATCATAAATAAAGGCTTCTTGTTTGTCAAGAAATATCTGGTCTAAATCTAGCTTCATGtgccatgtatttttttttctcaacacgTAATTTCTCCCCCTTCATACTCACTGGACAGTTTCAGGTATTCAGAACATAATTGAAGCTTTACGGTGGGAATTTGTGACTTAATCactaatgtaaataaaaatgttaagccTGATTTACGATGAAAGTTGGACATAAATCCagtgttttaaatctaaatgttcaCAGAATCGATTATACAagcattacaaatgaaaagtGATTTTTGCACCAAAGTCGAAGTTCAACCAGCAAAAGTCATTTATTCCATTGGGTATGAGGGGGTGATTAAAATGATAGAAATGAGATTGccccaaaaataattttctgtacATAAGActtataatgacaaaaaaaaaatatactcaTGTTCAATGATGGAATGGGTGAActgtttacttaaaataaatggttaaacCTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251883.1 lncRNA downstream 1554 11026069 ~ 11044853 (-) True LOC122352521
XR_006251882.1 lncRNA downstream 7607 11035692 ~ 11038800 (-) True LOC122352520
TU113402 lncRNA downstream 51981 10994218 ~ 10994426 (-) True G76632
TU113386 lncRNA downstream 59172 10959936 ~ 10987235 (-) False G76622
TU113385 lncRNA downstream 59172 10961160 ~ 10987235 (-) False G76622
TU113395 lncRNA upstream 8168 11087586 ~ 11091061 (-) True G76627
TU113412 lncRNA upstream 17545 11096963 ~ 11110835 (-) True G76642
TU113433 lncRNA upstream 138751 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA upstream 154954 11234372 ~ 11235690 (-) True G76662
TU113502 lncRNA upstream 406488 11485906 ~ 11486428 (-) True G76693
XM_043249941.1 mRNA downstream 62670 10972881 ~ 10983737 (-) False rps6kb1a
XM_043249940.1 mRNA downstream 62671 10972881 ~ 10983736 (-) True rps6kb1a
XM_043250187.1 mRNA downstream 100692 10892793 ~ 10945715 (-) True med13a
XM_043251066.1 mRNA downstream 154643 10873812 ~ 10891764 (-) False ints2
XM_043251065.1 mRNA downstream 154643 10873812 ~ 10891764 (-) True ints2
XM_043249947.1 mRNA upstream 2221 11081639 ~ 11138691 (-) True LOC122352515
XM_043249948.1 mRNA upstream 65967 11145385 ~ 11149832 (-) True btg3
XM_043249949.1 mRNA upstream 65967 11145385 ~ 11149776 (-) False btg3
XM_043249950.1 mRNA upstream 65967 11145385 ~ 11149693 (-) False btg3
XM_043249972.1 mRNA upstream 71693 11151111 ~ 11158734 (-) True LOC122352533
TU113393 other downstream 7676 11017110 ~ 11038731 (-) True G76625
XR_006251871.1 other downstream 62669 10977936 ~ 10983738 (-) False rps6kb1a
XR_006251870.1 other downstream 62670 10976328 ~ 10983737 (-) False rps6kb1a
TU113196 other downstream 566218 10478059 ~ 10480189 (-) True G76498
TU113101 other downstream 663098 10380096 ~ 10383309 (-) True G76438
XR_006251915.1 other upstream 97151 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other upstream 97151 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other upstream 97151 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other upstream 97151 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other upstream 97151 11176569 ~ 11205226 (-) False LOC122352715

Expression Profile