RNA id: XM_043249980.1


Basic Information

Item Value
RNA id XM_043249980.1
length 1539
RNA type mRNA
GC content 0.47
exon number 3
gene id tmem88a
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7812206 ~ 7817701 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCGGGAGGCCAGAAAGAGAAGTGAGAGCGGAGAGATATAGCCGAGATACCAAGGCAGGACATCTTCGTCAAAGGAAGGAAAGAGCGGAGCAGGAAAGGAGGAAGAGAAAGGGCTGAAATAGTGGAGCGAGCTATCCACAGAGTTCAGTTTCACACAGAGCCAGAGGAGATTCTACAGGTGGACATGAAAACTAGATGAACAAAACATATAGCAGCAATTACAGACTGGAATAAGCATCTTGGCCAGTGTTAAGGATTAATTGTGGAAAGGAAATTATATAACAAGTAAAGGAAATCTTTCTGCAGGAGGAAAGGTGGTGTTTGAGGCAACGGACGGGCAACTTTATTACTCTATTccaaaactacattttcataTCCGAAAGACTGATGAACGGCAAGATGAGTCTTTCCCGTAACGGTACCCTGGAGAAACCCGTGTCCCTGCAGACCTCCACGGACCGAGGGGAGCTCGATTCTCCTCACCCGCGCCTCCATCACACCGGCTCCATCTCCTCCAGTACTCCAGCAAACATGTCCAGCTCAGGTGTGGTGGTTCCTCCTCCGTACTCGATAGCGGGCAGTGCGGTGAACGAGTCTCCTCTGGAGCTGAGGGGGTCTCTGGACTGTTGGGCCTGCTCTGTTCTGGTAACAGCACAGAATCTGATCATCGCCGCGCTCAATGTGGGTCTGGCCGCGTTTATCTTCGGCCTCATCCTCTTGCCGTCGCTAGTCATGGTTGTTTTTGGCTTCCTCTGCCATTCAACGGTTCAGCGCCACGGTACGTCCGTCTACTGTTCGGATCTCTTGGACGATGGAGGCTGTGTGGCTTTACTGGTGGTGGGGTTCCTGCTGCTGGCTCCGCTCCTGGTCCTGGCTCTGGCCGCTTACTGCAGAATGGCACGCCACCTCCAGCTGGGCCTGTGCTTCATCCCTTACAGCCGTGCCGTCTACAAGAACCTGCCTGCCTCGCGTCATCGAGGCCTGGGGGGCTGCTGTGGCCAACAGGGGGCAGGGGAGAGCGAGGGAAAGGGTAGCGTGTGGGTTTGAGCGGcctaaaaaaaagttcaatgtGAATAGCCATAGCAATAGGTCACATACAAACAACCACATAGTGCCAATATGTCAATACAAGCAGTGCCATGTTTTAGCAGTTTtacaaattgtgcatttattcaACATCAGGCtctttttagctgttttttaaaaccGGATCACCTAGAGACCTTAgtctcatttcatttttaaatggaatgaAAACAAAGCTACAAGGGATAGAAAGACATTGTGTTCAATGGCTTTTGGTCTTGTTTAACAACATAGTTCGGCTGAGAAAATTTGAGAAAATTCTTTTTTTGGCAGAGAGgatgtgaaaattaaaaaaaaagtaaaagtaaaggttctttattgccATTAAACTATAGAACCTTTTCATTCCACGAAAGGTTCTTTACAGtggaaaaaagtttttttgtttttaaatgattcaaatttcCTTCACACTTACAAAAAATCATACTTCTAAGAACTGGTCACTAAA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111884 lncRNA upstream 129766 7682154 ~ 7682440 (+) True G75574
TU111772 lncRNA upstream 323639 7487475 ~ 7488567 (+) True G75502
TU111794 lncRNA upstream 404085 7402133 ~ 7408121 (+) True G75516
TU111792 lncRNA upstream 412173 7399428 ~ 7400033 (+) True G75514
TU111791 lncRNA upstream 412843 7398045 ~ 7399363 (+) True G75513
TU111912 lncRNA downstream 1614 7819315 ~ 7822518 (+) False si:ch211-237l4.6
TU111922 lncRNA downstream 22897 7840598 ~ 7859712 (+) True G75591
TU111925 lncRNA downstream 27518 7845219 ~ 7849236 (+) True G75593
TU111946 lncRNA downstream 83522 7901223 ~ 7902731 (+) True G75607
TU111975 lncRNA downstream 218433 8036134 ~ 8069911 (+) True G75629
XM_043250344.1 mRNA upstream 2123 7782188 ~ 7810083 (+) True kdm6bb
XM_043250346.1 mRNA upstream 2123 7786664 ~ 7810083 (+) False kdm6bb
XM_043250345.1 mRNA upstream 2123 7790198 ~ 7810083 (+) False kdm6bb
XM_043250347.1 mRNA upstream 2123 7790198 ~ 7810083 (+) False kdm6bb
XM_043250348.1 mRNA upstream 2123 7790476 ~ 7810083 (+) False kdm6bb
XM_043249958.1 mRNA downstream 109 7817810 ~ 7822337 (+) True si:ch211-237l4.6
XM_043249932.1 mRNA downstream 48634 7866335 ~ 7871448 (+) False ap4m1
XM_043249931.1 mRNA downstream 48637 7866338 ~ 7871448 (+) True ap4m1
XM_043250066.1 mRNA downstream 54838 7872539 ~ 7880100 (+) True arrb2a
XM_043250067.1 mRNA downstream 54838 7872539 ~ 7880100 (+) False arrb2a
TU111766 other upstream 446875 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 554977 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 590678 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 650943 7153586 ~ 7161263 (+) False LOC122352414
XR_006252001.1 other downstream 43545 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 43892 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 44259 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 46078 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 54838 7872539 ~ 7879241 (+) False arrb2a

Expression Profile