RNA id: XM_043249982.1


Basic Information

Item Value
RNA id XM_043249982.1
length 3142
RNA type mRNA
GC content 0.48
exon number 12
gene id fhdc3
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10028731 ~ 10036193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTTAAACTGCAGCTTCGTTGATAATTCAAGCGGTAGACGCGCGGCCCGTTTTAACCCAGTGTGCTGGATtgttactaaaacaaaataatttaacataatgACCCAGCGTGTGTAGTTTCATTTCTTCTTTAATTATGCAGCATGTTCTTTCCGAAGAACAAGATGTATTACAAATAGCAAAGGTGAAAGTTGCTCAGGTGAAGGGAGCGCGCGTGAGGGGGTGTGGCCACTTTCATCCATTAAAGCGCTCGCGCGGAGTTGATGGCGTGTGACATGTGGACTGTATGTTGACTTTCTCCAGCAATGGACGTCAGTTGATTAAGTGTTCATCACCACTAACCTGCTATCATTTGCTTACCGATTCCTCCCAGATTTCTCCACTCCGTGTCCTCCAATGGATGGAGCTCCAGTTGTAACCATGGCACCTCTACCTCCTCTGCCTCCTGACCCCTCTAAATGCTTTCAGAATGAGAACTCTCCCTGCGTACGTATTACACAGACCTCTCCCATGGGccctccaccaccaccaccgcctcctcctcctcctccgccacTTCCACTACCACCCCCACCTCCTTCACTTATGGGGGACAACTTCACCCGGACTGTCCAGCGGCGCTCCAAAATGCGCAACTTCAACTGGGACGCCATCCCCAGGCACAGCGTGTTGGGCAAGCGCAACGTGTGGACATCCCAACGCAACCTCGAGAACTTTGAGCTGGACACGAAGCGAATGGAGGAGCTTTTTAGCCACAATGAGCACCACGGTTTGGTCCGCAAGGGTGGGATggtcaaaaaaaatgtttggggaCTGTCGCAAATCACTACAGAATCCGATAATgTTTCAGTTCTCAACTCTAAAAAGAGTATGAATATTGGAATCTtgctaaaacaatttaaaagGCCACCTAAGGACATTGTGGAGGCCGTCAGGAACGGTAACCTGTGCTTTGCTTCTGGGAAACTGAGGGAGCTCAGCAAGCTGTTGCCTGATGACTTGGAGTCTAAGAAGCTCATGTCTTTCAATGGGGATCTATCTCAGCTAAACGAGGCTGACCGTTTCATGGTGATGCTGGTTCAAGTGCCAGGGTATAAAGTGAGGATAAAGAGCTTGCTCCTCAGAGAGGAGTTCTTTCCCTTTATTGAGGAGGTCAAACACTCCATTGCTGTCATGACAACCGCTGCTAATGAGTTGCTGGCGTGTGATGACCTACATTCAATCATCAGACTGGTGCTGAAGGCTGGTAACTACATGAATGCTGGTGGCTACGCAGGTAGCGCTATTGGCTTCAGGATGACATCATTGCTGAAACTGGTGGACACTAAAGCAAATAAACCGGGCATGAACCTTATGCACTATGTGTCCATGCAAGCCCAACAAATGGATGAAGCTTTGCTGCATTTCGCTGAACAGCTTCAGCACATTGGTATTGCTGCAAGGATCCAAAAGCAGGAGGTGGAAATGGACTTTCAAAGGGAGTTGGAGAAAATTAGGGAAGCAAATATAGATGCCCGTAAACAACCTGATCTATTGCATCAGATGGAAGCTTTTCTTCGTATGGCAGACATTCGGCTAGCGGATGTGGAGGCCTCTCTTCAGGAACTGGACAGCATTAGTACCTCTGTGGCAGAGTACTTCTGTGAAGACCCATCCACATTTAAACTGGAAGAGTGTTGCTCTATCTTTCATTCCTTCTGTGAGAGGTTTGAGAGAGCTACACAGGAAAACCGTGAGCGTGAAGCAGCTGAGACACGCAAGCGgcagcagagagaaagggaaaTGCTGACCAGAACAGCTAAACGCAGATCCACCGGCACATGCTCCAATCGGGATGGGACCGATGAAGCCTCTGCTCTGGAATCTGTCCTGACCAGCTTTCTCAGCCAACGTCCTTCTCGCAGGAGGCCCGGTGGGTTCATACCTGTCACAGACAGTCCCATCAAGAACATCCGCCCTCAGGTTGAGGAGCGTGAGGGCAGGGGAGATCTGGATGGCCCTGTGGAAACTAACGAGGAGGAATGTAAGATCTCGAAGGTGGAAGAACCAGGTAACATCTCCCAGAAGGAGGAGGTTCCACCCTGTACCGTTAATGATGTTCAGCGGGCACGAGCCGCTTCCAAAAGAGGCCAGTGCATTGATGATGAACCGATTCCTGAAAGCAGTGACCTCAAAGAAGTTGGGTGTTACAACCCCTCAGCTAAACATGAGCTTAAAGATGGAGCAACGAATAAAGAAGCTGAGGGGTTTGGAGACATGGATAAAGGAGAAGCAAGAGAAGAGGAGGACAACGAGAAAATAGAAGAAGCAGACAAAATGCCTGAGCTCTCCGGCAAGATCCTCCGCTTTCAGGATCGTGGTGTTGGCAGCCCGAATGCATCTGCTACACCTGATCATTCCCGAGGCCATGCCAAGTGCACCTCCACTCCTCAACAGAGGGATATAAAAGAGGTAGATCTGGCCTTGCAAAATGGACTGGGAGGTTTAGGCTCACCGTGGACCATCCTAAGCCCTCGTGTCTCTCCTCGTAACACGCCTCACCGCAGACACTCCTACTCCTTCTCCAGGGTGGACATCCTTGATGATGGTGTTTGGGCGTTACCTGACACTCCTGTACGTGACAAAACCTCATTGTCCCATTATGCCGGAGTGGGGACTTCATCCTCATTACCAGACTGTCCCTCAAAGCGAACTCCAGCACAGGGAACAGTTATAAGATCTGCATCACTTCCTGATGAAAAAGAGTCGAACTTCAAACTGGGACAGATCTTTCAGAGACGCACTGGACAGGAACTTCCTCCAGATAAGAGGACGGAAAGCTCAGGACTGGTATCTTTCTTCCGACGCTTCGGGGAAAGAAACAGGGCAGGAACTGTTGGTTAACATGACATGGCTTGTCTTAAAAGGATTTTACTGTGCCATAAAGGATATGAATGTAGACAAATGGGAACTTGTCTTACAACACTCTTGATTTCTTTTGTGTCCTGATGCTTGCTGAAGTTAACgtcttgatatttttatttctaataatctGATTTTATTGGGTCACAACACTGAATTTTATggactgaaatgttttattgttctgtctttttaaagtctgtcttatttttatgtaataaagtGTGGATCCCACCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112929 lncRNA downstream 5030 10023495 ~ 10023701 (-) True G76324
TU112807 lncRNA downstream 204562 9823035 ~ 9824169 (-) True G76233
XR_006251940.1 lncRNA downstream 265240 9761809 ~ 9763491 (-) True LOC122352923
TU112803 lncRNA downstream 311318 9717033 ~ 9717413 (-) True G76229
TU112794 lncRNA downstream 318023 9702688 ~ 9710708 (-) True G76225
TU112932 lncRNA upstream 62072 10098265 ~ 10106179 (-) True G76327
TU113040 lncRNA upstream 147901 10184094 ~ 10184522 (-) True G76388
TU113066 lncRNA upstream 205766 10241959 ~ 10242182 (-) True G76413
TU113074 lncRNA upstream 216832 10253025 ~ 10253861 (-) True G76421
TU113081 lncRNA upstream 280878 10317071 ~ 10317400 (-) True G76426
XM_043250577.1 mRNA downstream 1075 10001337 ~ 10027656 (-) False trim3b
XM_043250576.1 mRNA downstream 5388 10001337 ~ 10023343 (-) True trim3b
XM_043250578.1 mRNA downstream 12844 10001337 ~ 10015887 (-) False trim3b
XM_043250575.1 mRNA downstream 12844 10001337 ~ 10015887 (-) False trim3b
XM_043250835.1 mRNA downstream 128559 9888356 ~ 9900172 (-) False trpc4a
XM_043249930.1 mRNA upstream 446 10036639 ~ 10048457 (-) True arfip2b
XM_043249927.1 mRNA upstream 446 10036639 ~ 10048455 (-) False arfip2b
XM_043249929.1 mRNA upstream 446 10036639 ~ 10048454 (-) False arfip2b
XM_043249928.1 mRNA upstream 446 10036639 ~ 10048454 (-) False arfip2b
XM_043249926.1 mRNA upstream 30278 10066471 ~ 10158893 (-) True dchs1b
XR_006251964.1 other downstream 403326 9589980 ~ 9625405 (-) False LOC122353179
TU112582 other downstream 598931 9427962 ~ 9429800 (-) True G76068
TU112377 other downstream 1472643 8545367 ~ 8556088 (-) False G75913
TU112375 other downstream 1482579 8543097 ~ 8546152 (-) False G75913
XR_006251935.1 other downstream 1501285 8520681 ~ 8527446 (-) False smtna
TU113078 other upstream 231161 10267354 ~ 10277701 (-) True fgf13b
TU113101 other upstream 343903 10380096 ~ 10383309 (-) True G76438
TU113102 other upstream 343903 10380096 ~ 10381047 (-) False G76438
TU113103 other upstream 343903 10380096 ~ 10383309 (-) False G76438
TU113196 other upstream 441866 10478059 ~ 10480189 (-) True G76498

Expression Profile