RNA id: XM_043250012.1


Basic Information

Item Value
RNA id XM_043250012.1
length 5329
RNA type mRNA
GC content 0.49
exon number 42
gene id depdc5
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5253037 ~ 5274154 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cccGAAGAAGACACTGTCCATTTAGTTCAGAAAACAGTGCAAACGTTCCATTGTTTTTGATAGATGTTAGTTAAGATATACATTGTCGgcgtataaataaatatgcattatctATATAATAAACCTGTGTCCTACAATTAGAAGAAGTTTTGCAGAGCGTTCTCTCTGGGATCGGACGCAATGAGTCACGCGACTTGTAAACAAACGAGAGGATGACAGACTGTCAGGAGTTTGATTGCGCTTCttcatttttaagcactttgggcattatttaaaagtttgtcCTTGCATATGATTGTCGATTTGAAGAATGTGGATATTAAGATGTTAATAATTCCGCGGACTGCCTTAGCACTggatatttatttgttagtaAATGTTTATGACTGACTGACACGGCTACAATGACTGTTACCATGAAGGCAAACAAATCCTACAAACTTGTGGTGCACAAGAAAGGCTTTGGAGGGAGTGATGATGAGTTGATGATGAATCCTAAAGTCTTTCCTCAGGTTAAACTGGGGGATATTGTTGAGATTGCACATCCAAATGATGAGTATAGTCCTCTGCTGCTTCAGGTCAAGAGTTTAAAAGAAGACTTGCAGAAAGAAACTATCAGTGTAGATCAGACAGTGGCTCAGGCGTTCAAGCTTCGTGCTTACCAGGACGTCATCATCAATATTGTGGACCCAAAGGATGTGACCTTGGATCTGGTGGAGCTCACCTTCAAAGATCAGTATATCGGACGAGGAGACATGTGGAGACTGAAGAAGAGCTTAGTGAGCACATGTGCATATGTGACACAGAAAGTAGAGTTTGCAGGAATCAGGGCCCAGGCCAGTGAATTGTGGGTAAAAGGAGAGAAGGTCACTTGTGGCTACATTAGTGAAGATACAAGGGTGGTGTTTCGGTCCACCTCAGCAATggtttatatattcattcagaTGAGCTGTGAGATGTGGGACTTTGATATCTATGGTGATCTTTACTTTGAGAAAGCTGTCAATGGTTTCCTCTCAGATCTGTTTGCTAAATGGAAAGAGAAGAACTGCAGCCATGAGGTTACAGTGGTGTTGTTCTCTCGTACCTTCTACTCTGCTAAATCCCTGGAAGAGTTTCCAGAGCTCCAAAGAGCTTCAGTTCGACAAGATCATGAGGGACGTTATTATGAGGATTTCTACAGAGTGGTGGCCCAGAATGAAAGGCGTGATGAGTGGACATCTTTGCTCATCACCATTAAAAAACTCTTCATACAGTATCCTGTGCTGGTGCGTCTTAAAGGAGCAGATGGATTCCTGTGCGGGCACAATTCCACTGCTGCTCAGGGAAATTATCTGGAAGCCATCAACTTGTCTTTCAATGtttttgatAAACATTACATCAACCGTAACTTTGACCGTACGGGCCAGATGTCAGTGGTCATTACTCCAGGAGTGGGTGTGTTTGAAGTGGACCGCTTGCTCATGATTCTCACCAAACAGCGCATGATTGACAATGGCATCGGTGTTGATCTGGTATGCATGGGAGAGCAGCCCCTCCATGCTGTTCCACTCTTCAAGTTACATAACCGCACAGTGCATGGAGACTCTAGAATTGGTGATGACTACAACCTTCCTCACTGGATCAACCACAGCTTTTACACATCAAAAAGCCAGAACTCCTGCAGCTGTTTTACACCACGAATCAAGCTGGCAGGAAAAAAGgCTCATGCTGAGAAAGCTAAAAGCAGCAAAGAACACTCTCTTGGTGCACCAAAAGATGAGAACAGCCTACCGATCCAGGTGGACTATGATGCGTATGATGCTCAGGTCTTCAGGCTTCCTGGACCTTCCAGAGCTCAGAGGTCCACCAACTTCAGGTCGAGTCGGGAGAGAGAGTCAGCCAGCAGGAAAAGTTGGGGCTCAACAGATGTTGGAGGTGTAGTGGGCAGCTCTCCCCCAATCAGGCCTACAGGACCAGAAGAACAGAGGAGTCTGGCATCAGATGACAGTCTGAGCCACATCTCCAACATCCTGCTCATCCCACGCCCGGCTCAGGGCCAATATGAGGTCAGCAGCTCCCTGGGGTACACCAGCTGCACAAGAGAATTGCTAGAAAAGATGGTAGAATCCCAGAGGGACTCCAGTGCTCCAGGCCGCTTCACAGTGGGAAGTGCTGAGTCCACCCTTCACATACGGCCTGGTGGTTACACACCTCAGAGGGCCCTCATCAACCCATTCGCCCCTTCACGCATGCCAATGAAACTCACCTCTAACCGCCGTCGCTGGATGCACACATTTCCTGTGGGTCCTTCTGGAGAGGCAATCCAGATCCACCATCAGACGCGACAGAACATGGCAGAGCTGCAGGGTAGTGAGCAGAGAGACCCAGCTCGTACCTCCGCTGAACTGCTGGAACTGGCCTATCACGAAGCCACAGGAAGcaagCGGACCACATCCCGTCATGCAGGAGAGAATGGACTGTATATCACGGGAGTTCCTGATAATGTCTCTGGAAGCCCAGCTAGTAGCAACAGCACTGGAACACCAGTAAACCGTGGTTCTTTTGAGGATTACTCCAGTCCAGATCCGATGCCTAGTTTTTGCTGCACGGTTGGGGTGGACTGGAAGTCCCTCACCACTCCTGCCTGCCTCCCGCTCACCACTGATTATTTTCCCGACCGTCAAACCCTGCAGAATGACTACACAGAGGGCTGCTACGACCTGCTGCCACACACTGACTTGGAGAGACGTGACGATGAGACTCCAGTGATGACGGCCCATCAGGTGTTTGAAGAGTTTATCTGTCAACGACTAATGCAAGGCTACCAGATCATTGTACAGCCTAACAGAAAGGCACAGGCGGTTATAGCCCCACCCCTCAGCAGCAGCCCCCTTTATTCCCGAGGGCTGGTGTCTCGACGGAaaccagaggaggaggagagtgTTTACTGGCTAAGTATGGGAAGAACCTTTCATAAAGTCTGCCTTAAAGATAAGATCATTACCGTCACCCGTTACCTCCCAaaGTATCCCTATGAATCCACACAGATTCAGTACAGCTACAATCTGTGCCCTCCACATGTAGACGCCCACTTCCTGCCATTTTGGGTGGAGTTCAGCCATGAGAGGCTGGAGGAGTACAAATGGAACTACCTTGATCAGTACATCTGTTCTGCAGGCTCAGAAGACTTCAGTCTTATCGACTCTCTGAAGTTCTGGCGCACGCGCTTCTTGCTGCTGCCAGCGGGCGGAGCCAGGCGAGTGGCGGATGGTGAGGGTCACTGGGATGTGTATGGGGAGGGAATGGGGGCAGGCCGGGATGGTCTCTCTGGCACTGGCGACTGGTCTCTTTTGGATGGATTTATCCGCTTTTTAGAAGGTTTGAACAGGATTCGTCGCCGTCACCGATCTGATCGTATTATCCGCAAAGGAGCTCCTATTAAAGGCCTGCAGGTGACAGGGGCCCTCTCATCCTACAACCCGGAACCTATAGCACCCCCTGTGGGCAAAAAAGGCACCTCTGCCCTCTCTGCACTCCTGGAGCTGGATCAGACACAGAAGAGTTTAGAAGAGCAGCAGCTTGCTACTCAGCATGGTGGGAAATCATGTGGACCTTTCAGCGAAGCTGCCAGCGTTGCCCTAACAACCACCTATGTCGATAGCCCCCGTAAGGACGCTGCCTTCATTTTGGACTTTATTCGTAGTCCACGTTCCTCCTACATCTGTCATTCTCAGCTGCCAGCTGAACAGATTTCAGCAAATCACACTGAAGGTGGGTTGTCGGACAAAGGAGGCAGCCAACCAGGAGAGAGAACATCCGCTACATCCCAAGCCACAGGAGACGCAACCCCAGGGACTGGTTCAGAGACTGGTGGGCAGTCAGGGTCCAGTGGATTGAGTCTTTCCTCATCTTCCACACTAATGGATATCCTGGAAGCCATTAAGCATCCCACCACTGGAGTGCAGCTTTTGCCAGAGCAGAGGGGCCTGCCTCCCAACTGCTTTGTCAGTGCTGAGGTTGTACATTGGCTGGTCAGCACTGTGGAGAATGTTGCCACACACGGCATTGCAGTAGAAATCATGCAGAAAATGCTGGATGAAGGTCTAATTACACATGCCTCTGGTGATGCAATGCGGACGTTTGTCTATGGGTTCTACCTCTACCGGATTGTTGACAAAGACAATGAGAAGGCTCCTACAACTCAGCTGCCACCAGCGGGAGCCAATGTATGGTCTGCCGCTGCTTTGGAGGACTTCGCCCTATTCCAGAGGAAGTGGTTTGAGGTGGCGTTTGTTATGGAGGAACGTCGGCCCTGTGACTTACCTGCCTTCCTCCTGCCCTGGTTGCCCAGTCGGCCAGCCTCGTATGCAAGTAGGCATAGCTCCTTCAGCCGCAGCTTCGGAGGACGCAGCCAAGCTGCCGCACTGCTAGCTGCCACGGTACCAGAGCAGAAAACAGTCACCTTGGACGTTGATGTGAACAATCGCAGTGATCGGACTGAATGGTGCAGTTGCTATTACCATGGCAACTTCTCCGTCAGTGCTGCCTTTGAAATCAAGCTGCACTGGATGGCTGTTACTGCAGCCGTGCTCTTTGAAATGGTGCAAGGTTGGCACAGAAAGGCAGCATCTTGTGGATTTCTGCTTGTACCAGTGTTGGAGGTGCCCTTTGCCTTGTCATCGTACCTATATGGTGACCCTCTTCGTGCTCAATTGTTTATTCCCCTAAATATCCAGTGCCTGCTAAAGGAGGGCTGTGATAACTTGTTTGAGGGATTTGAGCCAGAGACATACTTGGACAGAATGCAGTTGTTTCAGGAGGCCATACTCTCCAGatttGGCTTTGTTCAAGACAAATTCTCAGCATCAGCTTTTAACTTTCCATCAGAAAACAAACCTCAGTACATCCATGTAACAGGTACAGTTTTTCTTCAGCTGCCTTACTCAAAAAGGAAATATTCCAGTGGACAGCGGCGGCGCCGTAACTCTGCTACCTCCACCAGTCAGAGCCTGTTTGGTTCTGAGGAGCGAGTGGGCTACAACTGGGCCTACAACACCATGCTGACCAAAGCCTGGAGGACTGGCGTACTGGGGGATGAGAAACTGGCTGACCGCCTGCTGCGAGATTTCACAGACTTTTGTGCCAACAAGGATAATCGACTGGTGACCTTCTGGGAAAGTTGTGTGGAGAAAATGAACGCCAGTGCCCCTTGAGAAAAGACAGTGGAGGAAAGGCAATACTGTATCAGAGAAAACAGAAACTGTTTGCCTCTGTTTTAAGAGCTAATGTACTGGTACTATCATCTAATCAGAAATAAAGCAAAGACCCTCGTCATCAAACACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110923 lncRNA downstream 17088 5235606 ~ 5235949 (-) True G74959
TU110921 lncRNA downstream 113578 5137567 ~ 5139459 (-) True G74957
TU110919 lncRNA downstream 115861 5136158 ~ 5137176 (-) True G74955
TU110878 lncRNA downstream 151618 5097644 ~ 5101419 (-) True G74923
TU110907 lncRNA downstream 157009 5095628 ~ 5096028 (-) True G74944
TU111028 lncRNA upstream 107422 5381576 ~ 5451970 (-) True G75019
TU111074 lncRNA upstream 224329 5498483 ~ 5500310 (-) True G75049
TU111102 lncRNA upstream 284788 5558942 ~ 5559159 (-) True G75065
XR_006251947.1 lncRNA upstream 604565 5878719 ~ 5890613 (-) True LOC122353023
TU111192 lncRNA upstream 614820 5888974 ~ 5889561 (-) False LOC122353023
XM_043250013.1 mRNA downstream 318 5248160 ~ 5252719 (-) True ywhah
XM_043250598.1 mRNA downstream 199273 5049998 ~ 5053764 (-) True LOC122352871
XM_043250004.1 mRNA downstream 221577 5029305 ~ 5031460 (-) False LOC122352563
XM_043250003.1 mRNA downstream 221710 5029305 ~ 5031327 (-) False LOC122352563
XM_043250005.1 mRNA downstream 221729 5029305 ~ 5031308 (-) True LOC122352563
XM_043250083.1 mRNA upstream 317 5274471 ~ 5279198 (-) True rab36
XM_043250485.1 mRNA upstream 9933 5284087 ~ 5324750 (-) True gnaz
XM_043250486.1 mRNA upstream 9933 5284087 ~ 5303108 (-) False gnaz
XM_043250465.1 mRNA upstream 97722 5371876 ~ 5382925 (-) True LOC122352800
XM_043251091.1 mRNA upstream 110068 5384222 ~ 5391563 (-) True slc2a11l
XR_006251921.1 other downstream 1340295 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1340295 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1645249 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1913108 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 3055726 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1264380 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1354271 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1354276 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 1903170 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 1903597 7177751 ~ 7180821 (-) True G75454

Expression Profile