RNA id: XM_043250022.1


Basic Information

Item Value
RNA id XM_043250022.1
length 4575
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC122352574
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7063661 ~ 7076378 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAAGGGTCTGGGAGGGAGAACCTGAAGAAAAAGTGCTGTTTTACAAACTGGCCGTCACACTTGTTGCAGACCATGACGTTGATCGAGTCTCTCGCTGACCTGGAGCTCGTTTGTTCTCAAAATGCCGAATGAGAGAGACGACCGCGACATGCACGCCAAAGAGCAGTTCATCATGTCTCACGCCGCTCTTTGCACCATCCCGCTGGCGCTCTCGGCGGGAGAcgctgccgccgccgccgcgGAGACCGAGCGAGGCGCGCCCGACGCTCACGGAGAAGAGTTTGCCCACAGTCACAGAAACGCCTGCCTTCGCCCCGACAGACCTGCGCTGAACAGGTGTATGACTCTGCCTGGAGCTCTTGTAGAAAACGACCCCGTCAAGGCGGAGGCAGCGGAGGGATCCAGACATGAGTTCGGCCATCACGCGCACAGGTTGTTCGACAGCGATGACGACCTGGACTATCACGTGCACCATCACTGGCATCCTCACGAGAGCAACTCGCACTATTCCTTTGAGGCCATTCAGCGCAGACATACCACCCTGAGGAGAGTGCCGCGGCAGGCCGTCCGTGGCCCCGCTTACATGTTCAGCGAGAGAGGCACCAGTCTGACCGAAGAGGAGGAACGTTTCCTAGACGCTGCAGAGTATGGAAACATCCCCGTGGTCCGTAAGATGCTTGAAGAGTCCAAGACTTTGAATGTGAACTGTGTGGACTACATGGGTCAGAATGCGTTGCAGCTCGCTGTAGGGAACGAACACTTGGAGGTCACAGAACTGTTGTTGAAGAAAGAAGGGCTGGCGCGAGTGGGTGATGCCCTGCTGTTAGCCATCAGCAAAGGCTACGTGCGGATAGTAGAGGCCATCTTAGCCCATCCGGCATTCGAAGGTGGCCTCCGTCTGACTCTGAGTCCCCTGGAGCAACAGCTACGAGACGACGACTTCTACGCGCACGATGAAGACGGGACTCGCTTTTCCCAGGATGTCACGCCTATGATTCTAGCGGCCCACTGCAAGGAGTGCGAGATCGTGCACATTTTGTTACTCAAGGCTCGCATTGAGAAACCCCACGACTATTTCTGCAAGTGCGGCGAGTGTGCGGAGAAACAGAAGCAGGATTCTTTCAGCCATTCGCGATCGAGGATGAACGCCTATAAAGGCCTCGCCAGCGCTGCATATCTGTCACTGTCTAGCGAAGACCCTGTGCTCACGGCTCTGGAGCTCAGCAATGAGCTGGCACAACTCGCCAACATCCAGACTGAATTTAAGaatGACTACAGGAAGCTCTCCATGCAGTGTAAGGACTTTGTGGTCGGCGTTCTGGATCTCTGCAGGAACACAGAGGAGGTGGATGCCATTTTGAATGGAGATGTGGACCAGAACCCCCTGAGCGAACACCATCGCCCTTGCCTTAGCCGGGTCAAACTGGCCATTAAATATGAAGTGAAGAAGTTTGTGGCTCATCCGAACTGCCAGCAGCAGTTACTGACGCTGTGGTATGAGAATCTATCAGGCCTTAGGCAGCAGTCAATCGGCGTGAAGTGTTGGACAGTGCTGGGAGTGATGGTTGGCCTGCCATTTCTTGCTATTGCATATTGGATTATGCCCTGCAGCAAGGTGGGCCAGGTCCTCCGCAGTCCCTTTATGAAATTTGTAGCTCACGCCGTCTCGTTCACCCTCTTCCTATGTCTTCTGGTCCTCAATGCGTCCGACCGCTTTTCGGGGGTCAAAAACCTTCCTAACGAAACCATCACTGATCATCCACGGCAGATCTTTCGCATTAAAACCACTCAGTTCTCGTGGACAGAGATGTTGATAATGGAATGGGTGCTGGGAATGATCTGGACGGAGTGTAAGGAGGTTTGGGCCGACGGACCACGAGAATACATCATGCATTTGTGGAACGTGTTAGACTTCGGGATGCTGTCGGTGTTCGTGGCGTCATACACCGCGCGGTTCATGGCTTTCCTGCAAGCCTCCCATGCACAGCTCTATGTGGATTTGTACGTGACTAACGCAGATCTGATCAATGCCTCGTTACCAGAAGACGTGGCCTACTTCACTTATGCCAGGAACAGGTGGCTTCCCTCAGATCCTCAGCTCATCTCCGAGGGCTTGTACTCCATCGCTGTGGTGCTCAGTTTTTCACGTATTGCGTACGTTCTGCCGGCCAACGAGAGTTTTGGACCCTTGCAAATATCTCTTGGGCGCACTGTgaaggatatttttaaattcatggtCATCTTCATCATGGTCTTCCTCGCCTTCATGATCGGCATGTTTAATTTGTATTCCTACTACTTGGGGGCTAAATACAATCCTGCTTTTACCACGGTCGAGGAAAGCTTTAAAACACTGTTCTGGTCCATCTTTGGTTTATCTGAGGTGATCTCCGTGGTTCTGAAGTACGATCATAAGTTCATCGAGAACATTGGTTATGTGCTCTACGGGGTCTATAACGTCACAATGGTGGTGGTTCTGCTCAACATGCTCATAGCCATGATCAACCACTCATACCAGGAGATTGAGGAGGACGCTGACGTAGAATGGAAGTTTGCTCGTGCAAAGCTGTGGCTCTCCTATTTTGATGAAGGCAGCACTCTTCCACCCCCCTTTAATCTAATGCCCAGCCCCAAATCCTTCTATTACATGGCTCAGCGCACCAAAGCATGCCTAGTGAGTTTATGCAAGGCCAGGGTTCGTGGCAACAGCAGCCAGCAGGACGTGGGAACGGCCAATTCACGCTCTAAGCTTCGTCGGTTTCAGCCTTACCACGCACAGGAAGGCTTCACGGTTAGAAATCCTATCAAACACCCCACAAGATATCAGAAACTCATGAAGCGTCTCATCAAGCGGTATGTCCTAAAAGCCCAAATTGACAGCGAAAGTGATGAGATCAATGAAGGTGAGCTGAAGGAAATCAAGCAGGACATTTCCAGCCTCCGCTATGAGCTCCTGGAGGAAAAGTCGCAGGCCACTGAAGAACTCGCTGAGCTGATTCAGGAGCTCGGAGACAAACTCAGCAAAGGAGCAAAGAGACCATGAGAAACGAAACTCTTGTGATTCTAGCCGAGAGTGTCCTGGACCGAGTCTGGATCTgctgaaatatttagtttagatAAAAACTTTAAAGTCTTAAAACGTAATCCGTTTTAGACATCGGTTTGTGAAGGTGTGGTTTGTGGTGTAGgatgcaatttaataatttaataatttaatgacgCAGGAGAGACACAGTGctgtagaataataataaattcaaatggaCGTATTATCACAATatctatattattaaaatgacaacaagAGCTAAATGTGCTAGTTCTGACATTAGTTCTCAGTATCCCAGAGCTGCACATTATGATCAAGGAGGCTTGGCACATGAGTTAATGataacaatgtgtttttttaataaggtaGACATCCAAAATGTGCATGGTGGAAAAACTCCAGGATCTGGACGgagataatattataatatgcaataataatatagtaataataatgcgCAATAATACCTTTCTCGTTCTTACgcacacactttttaaattgtgtatcATGAAgaaatatagaattatattttgTCGGGAGAAAatgaagcctttttttttaagactgttAAAGGTTTTACAAGAAAGATAACTATGTTTCCCTTCCAAGACTGTAACgcagtaaaataaattttcatttctcaaaaaaacaaacaaaaaaacacacaatgcaaATGGTCCTAATGGAAGGCTTggttttctttatgcaaagtAGAAGTGGATAAAAACAACGGGGCTGTGTGTGTTAGTACTGACTGTTATGACGATGTATTGTCATATTtcagtttgaaaataaaatattaaaagtgccTGCTTATACCCGAGTTATTGATGGCATTTTTCAATAGTAGCATATGTTTAAACAAACGTACACTTTTTCTCGCAGGGATGCAGTtttgaaacaaaccaaaaataagcGTGCGTTTAAAACAGAAGGGTGTATCTTATAAAACTgtcaaaagtgttttattttgaagaaattaaagagtattattgttattacactgttattgttattattgttattaaactGAAACTACCATAGCCTGTATAGctcttcattttattaattaatttctttttattaattaagtgCTTATTGTTACcataattgttattttgtatcGATTTGTTATATGATTTGTCACCATTTGTGTTGCTTATTAGTTGCtccattcaaaattaaaataattatgttactCATTGCTTTCTGGAAATAGTTATTACTTGCACTACTAATTACATTACTTTTCCTTCAAGCTCCAGAGTATATTTCTCTAGAAAGATTTTACTGAATTACATCGGGTTCAAAGGAATGTGGGTGGGCCATGTAATGCAATACCACAAGTGTTCAGATCATCTTTTCTCCTGACTCAATGTAATGGCAATATCcactgaatataattttttatataaaatttattaaagGATTATTGGATTTTAAATCAGCAGGGGTTAGGGCATCGAAAGTAACTagctgttttaaaattattactgaataattattagtaaaaaattAGTTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 70453 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 77764 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 304016 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 407751 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 413256 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 289039 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 321667 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 323050 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 325755 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 411097 7487475 ~ 7488567 (+) True G75502
XM_043250756.1 mRNA upstream 70040 6981492 ~ 6993621 (+) True trpc7a
XM_043249827.1 mRNA upstream 437063 6625432 ~ 6626598 (+) True prnpb
XM_043251081.1 mRNA upstream 439447 6614030 ~ 6624214 (+) True si:dkey-81j8.6
XM_043250508.1 mRNA upstream 452786 6602377 ~ 6610875 (+) True letm2
XM_043249826.1 mRNA upstream 547734 6507050 ~ 6515927 (+) True r3hcc1
XM_043250026.1 mRNA downstream 183 7076561 ~ 7082454 (+) True LOC122352576
XM_043250027.1 mRNA downstream 186 7076564 ~ 7082454 (+) False LOC122352576
XM_043250023.1 mRNA downstream 6594 7082972 ~ 7094576 (+) False fbxw11b
XM_043250025.1 mRNA downstream 6920 7083298 ~ 7094576 (+) True fbxw11b
XM_043250041.1 mRNA downstream 37025 7113403 ~ 7117973 (+) True LOC122352586
TU111380 other upstream 591554 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 974074 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1501576 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1563357 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1804838 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 65915 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 77208 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 77208 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 132157 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 166889 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile