RNA id: XM_043250025.1


Basic Information

Item Value
RNA id XM_043250025.1
length 2658
RNA type mRNA
GC content 0.51
exon number 13
gene id fbxw11b
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7082972 ~ 7094576 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaatGGCTGGCTCGGCTGACAGGGAGGGCCCTACTATGTATCTCTGGCTCGCTTGGTCGTTTTCACGTCTCGCGCCCGTGTCTTTCCCTTGAAACGACAGCTGAGGCGTTAGTAGACGAGGCGAACAGTTGTCCTTGGCGGGGCTGAGGGCGTTTATAGAGCTAGTCGCGGAGGCGAAGGAAGGAAGCTGCCGCGGCATCGTGaacatctCTGTCATGGACTCGCAGACTGCAGACCGCTCCCCAAAGATCACAGTGATTAAGCCTACTTTTATCTGTCCTCAGGTGAGTAATGGACCTTTGACAGGCTCTAGGAAGCGGCCATCAGAGGGAAATTACGAGAAGGAGAAGGACGTGTGCATCCAGCTCTTTGATCAGTGGTCTGAGGCAGACCAGGTGGAGTTTGTGGAACACCTGATCTCACGCATGTGCCATTACCAACACGGCCACATAAACTCCTACCTCAAACCCATGCTCCAAAGGGACTTCATTACGGCACTgccagCTCAGGGTCTGGATCACATAGCGGAGAACATCTTGTCCTTTCTGGACGCGCGCTCGCTTTGTTCGGCTGAGCTGGTCTGTAAAGAATGGCAGCGTGTGATATCCGAAGGCATGTTGTGGAAGAAGCTGATCGAGAGGATGGTTCGGACAGACCCGCTGTGGAAGGGCCTTTCAGAGAGACACCAGTGGGAAAAATACCTGTTCAAGAACCGCACAACAGAAGTTCCTCCTAACTCGTACTACCGCTCTCTTTATCCAAAAATCATTCAGGACATTGAGACCATCGAGGCGAACTGGAGGTGTGGCCGACATAACCTGCAGAGGATCCAGTGTAGGTCGGAGAACAGCAAAGGCGTTTACTGCCTCCAGTATGACGACGAAAAGATCATCAGCGGTCTACGAGATAACTCCATCAAGATATGGGATAAACAGACCCTGGAGTGTTTGAAGATCCTGACGGGACACACAGGCTCTGTGCTGTGTCTGCAATACGATGAGAGAGTCATTGTTACCGGCTCCTCTGATTCCACTGTCAGAGTGTGGGATGTGAACTCGGGGGAGGTTCTGAACACTCTGATCCACCACAACGAGGCCGTGCTCCACCTGCGATTCTGTAACGGGCTGATGGTCACCTGCTCGAAGGATCGCTCCATCGCCGTGTGGGACATGGCCTCTCCTACGGACATCAGTCTCCGCCGGGTCCTCGTCGGACACAGGGCTGCCGTCAATGTGGTCGACTTCGACGACAAGTACATTGTCTCTGCCTCTGGGGATCGGACCATAAAGGTGTGGAGTACAAGCACCTGTGAGTTTGTTCGGACACTAAATGGTCACAAGCGAGGCATTGCCTGCCTGCAGTACAGAGACAGACTTGTGGTCAGCGGCTCTTCAGACAACACCATCagGCTGTGGGATATCGAATGCGGAGCTTGCTTGCGGGTTTTGGAAGGGCACGAGGAGCTTGTTCGCTGCATTCGCCTCGATAACAAGCGGATCGTGAGCGGAGCGTATGACGGtaaaATTAAAGTATGGGACCTACAAGCTGCTCTCGATCCACGAGCCCCAGCCAGTACTCTGTGTCTACGTACACTAGTGGAACATTCTGGCCGAGTGTTCCGGCTTCAGTTCGACGAGTTCCAGATCATCAGCAGTTCCCACGATGACACTATCCTTATCTGGGACTTCCTCAACGTGTCGACCAATGGGCAGACGGAAGGGCGATCGCCGTCCCTCACGTATACCTATATATCCAGATAGCAGGGAAGCCCCGGTGGCGTGCGGAgcgtgtgcgagtgtgtgtgggGACTGTTCGGGTGACCCAGTCTCTGTGAAAGTGTGCCAGGATCAAAGGTCGAGGAAcgccaccaccaccaccacccccCCCTCCCTTCACCCtcctctctccatctgtccGTTGTATTTCTCGCCCTCTTCAGTCGTTACGAGGGCCGCCCCCCACGACACAAACCGCGTCAgttctctttctccctctctgcAGAGGAGGAGGCGGAGAAAAGATGGAGAGAGATGCCATTAAACAGAGCGTAAGGGTGGGCGTGGAGCCCCCCCCTCTCCTCTCACCCCCGCCACCCACGTACAGAGTGAGGGCTGCCCCGGCTCCGCCCCCTGGGCCCACGAACTCTGTATCTAtcttttggttttttatttttactgattcaaaaagaaaaagatgaaaaactaaAGGGAGAAGGCAAGGTCCGAGTGCCTTCCTTCTCTCAGGACTGTTTTGCATGAATGAGCGAGCGATGGGACGTGTAACGTGTGCTGGTCAACCCCTCGGTTTCTGTcttatgattttgttttttatgcttttttttttttttttttcccctttttttttttttaagttgggAAATTGacttcatattttcttttctcgTGAAATCGTATGAATAATTGTAGTTTTTGACTCTTCTCCTGATATGTCCCGCCATTTCTCGTTTTTAGCGCTGTCTGTCTCGTTCCCCTTTTCACTGTCTGCTTGTCTAGGTTCTGAATGACTCATAACTGATCTGAATTTAGTTGTAAACAGAATTGTCTCGTCTAAAATGGTGTTGTAtattgaaaagatttttttaaagaaaaaagcgttattaataagaataaagTACTTGACTGTGAAGGAGTGTTAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03362 FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 90090 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 97401 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 323653 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 427388 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 432893 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 270841 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 303469 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 304852 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 307557 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 392899 7487475 ~ 7488567 (+) True G75502
XM_043250026.1 mRNA upstream 844 7076561 ~ 7082454 (+) True LOC122352576
XM_043250027.1 mRNA upstream 844 7076564 ~ 7082454 (+) False LOC122352576
XM_043250022.1 mRNA upstream 6920 7063661 ~ 7076378 (+) True LOC122352574
XM_043250756.1 mRNA upstream 89677 6981492 ~ 6993621 (+) True trpc7a
XM_043249827.1 mRNA upstream 456700 6625432 ~ 6626598 (+) True prnpb
XM_043250041.1 mRNA downstream 18827 7113403 ~ 7117973 (+) True LOC122352586
XM_043249860.1 mRNA downstream 24006 7118582 ~ 7125259 (+) True LOC122352453
XM_043250021.1 mRNA downstream 33028 7127604 ~ 7130592 (+) True LOC122352572
XM_043250001.1 mRNA downstream 36160 7130736 ~ 7133928 (+) True LOC122352559
XM_043249828.1 mRNA downstream 39898 7134474 ~ 7137426 (+) True LOC122352413
TU111380 other upstream 611191 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 993711 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1521213 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1582994 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1824475 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 47717 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 59010 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 59010 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 113959 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 148691 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile