RNA id: XM_043250027.1


Basic Information

Item Value
RNA id XM_043250027.1
length 2873
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC122352576
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7076561 ~ 7082454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCCCCCACGTGAGCCTCCACCGAAGCACCACGCGCAGCAAGACCAAACCGGCTGCTAACGATAAGTGTATCAcgtcactgagaaacagcggcGAGCGAGCTGTGGACCACAAAGTAACTGCCGTACGGACGCGGCGGAGCGGATCATTCTAGTCTGTCCAGACAGCGCGAGGAAGATGGCGGACGACCCCAGCGCAGCGGACAGGAACGTGGAAATCTGGAAGATTAAGAAGTTAATCAAAAGCCTTGAGGCGGCTAGAGGAAACGGCACTAGTATGATTTCCCTCATCATCCCACCCAAGGATCAAATCTCTCGTGTGGCGAAGATGTTGGCCGATGAGTTCGGCACAGCTTCGAACATCAAGAGCAGAGTCAACAGACTCTCGGTGCTGGGAGCCATTACCTCAGTACAGCAGAGACTCAAACTCTACaacaaagTGCCTCCTAATGGCCTGGTGGTGTATTGTGGCACCATAGTGACAGAGGAAGGCAAAGAGAAGAAAGTAAACATTGATTTCGAGccttttaaaccaatcaacacATCCTTGTATTTATGTGACAATAAGTTCCATACTGAGGCTCTAACAGCTCTGCTGTCAGACGACAGCAAGTTCGGCTTCATTGTGATTGATGGTAGTGGCGCCCTGTTTGGGACTTTACAAGGCAACACAAGGGAGGTGTTGCACAAATTTACTGTGGACCTGCCTAAAAAACACGGTAGAGGAGGACAGTCCGCTCTTCGATTTGCACGTTTGAGGATGGAGAAGAGACACAACTATGTGCGTAAGGTAGCGGAGACGGCTGTGCAGCTCTTCGTGTCCAATGACAAGGTCAACGTGGCAGGACTGGTTCTCGCCGGATCGGCCGATTTCAAGACGGAGCTCAGCCAGTCGGACATGTTCGATCCGAGGTTACAAGCGAAGGTCCTAAAGCTGGTTGATATATCGTATGGAGGAGAGAACGGTTTCAACCAGGCCATTGAGCTTTCGGCAGAAGTTCTGTCCAATGTCAAGTTCATCCAAGAAAAGAAACTAATAGGCCGATACTTTGATGAGATCAGTCAGGACACAGGGAAGTATTGTTTTGGAGTTGAAGACACACTCAAAGCGCTGGAGATGGGAGCGGTGGAGATTCTTATAGTTTACGAGAACCTGGACACTATGCGTTACGTCCTACGCTGTCATGGAGAAAATACTACACCAGAAAatgATGAAAAGATACTCTATCTGACACCGGAACAGGAAAAAGACAAGTCTCATTTCACTGACAAGGAGACGGGTCAGGAGCATGAGCTGATTGAGAGCATGCCGCTGCTTGAGTGGTTCGCCAATAACTACAAGAAGTTCGGGGCCACGCTGGAAATCGTTACAGACAAAAGCCAGGAGGGTTCACAGTTTGTGAAAGGCTTTGGAGGCATCGGTGGAATCTTGCGGTACCGGGTGGACTTCCAAGGCATGGAGTACCAGGGAGACGACGATGAGTTTTTTGATTTAGATGACTACTAGGTAGTCGGGACTGAcacaaaattcaaatataagATTTTTCCCCTTCACCTACCCCGCGAACGGCAGGGGAGCGAAGGAGATCGAATCAGCAGGAGGGAGAATAAGAATTTAAGAAGATGGCGGATGGTCTGCGTGTCCCTGGCTTTAGAATACAGCGACTCCATCTCTGGACTGGAAGAGACTGAGTTTTCTCCTCTCCACTAATTACCGGGTCATCGCAACAGCATGGCCGTGGCCCGTCTGCCTGTCCTGCCTCAGCTCTTCACGAAAACACTCTAGGCTTTCAGATCTACTTTTTCTTCCCTTCTAATCGCACTCCTTTTCTTCCTTTTGCCTCTCCTTTTATAATGGCATCTGCTGctgttgtattttattcaaatgtattatattttctcTTATTCAGTGTATGAAGAAAGCAGTAGCAAATGATTAGATCTGTACTGCTTACCTCTAGCCACCTCGAGCCCATTGCCAGGCCTGCGTTTTAATTTCCTGGTTAGCCCAGACTTGATTTGTTGCCTTGTTTCTGCTGTAAACCAGTGTGGTggttggtggtggtggtgatgcaCTCTGAGCCAGCGGTACACCCTGCTCCTCCCATCGCATTGTGCCCACATTGAGGCGTTTCTTGCTCTCAAATGGACCATATAGTAACTGGACCCATCCCTTCTTGAAGACCGAGAACCGTCTTTCACAGTACATTGCCCTCACTTGTTTTCCTCAGCCCCCAGGAGATGCTACTTCtcaaaataaactatatatgaGTGCCTGAATTTTGCAGTTTGTGAGATATGACAGCACAGTGTACCAGCATCCGGGCCCTAACTTCAGCCTCCTGCTGTTTCCGAACATAAAATCTTAGCTCGAGCCTTCAGCACTCATTGGTATTCGACGGCTTTATGCATGGGAATGTCCTTTCGGACCGATTatggggtgggggtgggggggtTACTGTGTTAACTGTGATGTGTGAGTGAGTATATGTCAGTTCGGCTGTTTAATTCCCTTTTTAAAAGTCACGTCTCAGAGTCTGACCCGCCGCAGATTACAAGCATCGAAGTTCTTTGCATTTATGTCCAGTCATATTTTAACAACGGATTGGTTTTAGAAAGACAAGCTgcaaatcaatattttgaaCCTTTTAACAACTGTGGCATGGTTGGCGTTTTGACGCCTACTTAAACGAACATGCAAACCGATAATGTAAAAGGAGAGAGGGGGGGAGAAACGATCCAAAACACGGGCCCACAATATTTTAGCGAatattatgttgtatattttctcattttctttgatCCATCACTATTTTGTATAAATCATTTGTTACATCTGGACACAGACATTAAACGTTCTCATTGTTTGCAAA

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 83356 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 90667 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 316919 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 420654 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 426159 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 282963 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 315591 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 316974 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 319679 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 405021 7487475 ~ 7488567 (+) True G75502
XM_043250022.1 mRNA upstream 186 7063661 ~ 7076378 (+) True LOC122352574
XM_043250756.1 mRNA upstream 82943 6981492 ~ 6993621 (+) True trpc7a
XM_043249827.1 mRNA upstream 449966 6625432 ~ 6626598 (+) True prnpb
XM_043251081.1 mRNA upstream 452350 6614030 ~ 6624214 (+) True si:dkey-81j8.6
XM_043250508.1 mRNA upstream 465689 6602377 ~ 6610875 (+) True letm2
XM_043250023.1 mRNA downstream 518 7082972 ~ 7094576 (+) False fbxw11b
XM_043250025.1 mRNA downstream 844 7083298 ~ 7094576 (+) True fbxw11b
XM_043250041.1 mRNA downstream 30949 7113403 ~ 7117973 (+) True LOC122352586
XM_043249860.1 mRNA downstream 36128 7118582 ~ 7125259 (+) True LOC122352453
XM_043250021.1 mRNA downstream 45150 7127604 ~ 7130592 (+) True LOC122352572
TU111380 other upstream 604457 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 986977 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1514479 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1576260 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1817741 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 59839 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 71132 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 71132 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 126081 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 160813 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile