RNA id: XM_043250044.1


Basic Information

Item Value
RNA id XM_043250044.1
length 3984
RNA type mRNA
GC content 0.43
exon number 11
gene id sdr42e2
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14554997 ~ 14568193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGACAGCTGTGATTAAAAGGTATTTAGtgtaagaaaatgtataaatgttattGTATGCTTGCTTTTTATGCAGTACTATATAAGGCTGAACGATACCTTCAGGTAAAAAGAGCTTTTGTTTACCTTGATGGAAAGTTcgattttattaataaatataaaataaaaacaacagtgcCTATTGGAGGGtaattttacagtgaaaaacatTACCAGGATTACACAGAAAATTAATTTGACTTTTGAGAATTAATTTGAGATTTGAAAAGAGAGACGCGTAGGCTGCCATTGAAACAATCAGATCTGCTGGATTCTTAAAATGGACCCGCAGGCCCGCAAGTTGTTTAAAGCTAGTTTTCTGTGTTAATTTACTTGTCCATATTTGTCggtttttatttaactttccATTTAGGTAGGCTATTATTAAAAAGTGTGCGCGCGTTgtgctttttcttcttcttgtgaATGTTTGGCCAACAGGCTGCTGATTGGCTGCCGCGGGTTCGCGCGCGCTCGGTGTTTTACGGTAACGCGCTCAGGTGAGGCGCAGGTGATTGACAGATGAAGAACATCGTCAGAGACACCGGCGGGATGACGCGATGCACGCGCAGCTGACGGACACAGCACGCGCTTGATCAGTAACTGACAGACTGGACGCAGTGGAGGTATCTGAAGCCACGTGTGCATTATGAAGGAGAACAGGTCCTCGTGTCAGGTGGAGCAGCTGCCCTGTGCATGTCTGCTAGACTGCCACCGACCGACCCACACCCGCGGCGCCGCAGGGGCCCCGCCACGACACAGAGCCAACGGGGCCGTGGGGGCCTCGTGCAACAGTCCCAACTGCGTGGTGGCCGCCAGGCTGGAGGACCCAGAGCGGGGCCGGCACGGGGCCGGCAGGGTGCTGGTCACCGGAGGGGCCGGGTACTTCGGGTTCAGGCTGGGCCGGGCTCTGGCAGGCCAAGGGGCCACGGTTTTACTCCTGGACCTCCACAAGCCGCCCTGGGATCTCCCCGATGGAGCCGTCTTCCAGCAGTTGAGGAGAAAGATGATTGAATCAGTGAATGTCGGCGGCACGAACAATATCATAAACGTCTGTACGGAGAGGGGCATCTCTAGACTCATCTACACCAGCACAGTCAATGTGGCGTTTGCTGGCCGACCCATCGAGGATGGAGATGAAGACTCGGTTCCCTGTGTGCAGCTGGACATGCACATAGACCATTACTCTAGGACCAAAGCTATCGCTGAACGCATGGTGCTCGCTGCCAACAGAAGATCAACAAAAGGTGGTGCTCTTCTTCACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGACATTTACACAGAGTGATgGTGAATGTGGAGAGGCGGTTGTTCAGCTTTCGTTTTGGGGACCCTAATGCCAAGATGAACTGGGTCCATGTGGACAATCTTGTGACGGCTCACGTTTTAGCAGCAGAAGCGCTCACTGCAGATAAAGCTTATGTGGCGAGTGGACAGGTTTATTTCATCAATGATGGGGAGTCTGTCAATGTCTTTGAATGGTTGACACCTCTGTTCGAAAGACTGGGATACGGTCGCCCACTGATTCACCTTCCCGTGTCTCTGGTCTACTCAGCAGCAATTCTGATGGAGCGACTGCATGTGGCTCTGAGTCCTATAATGGAGATCCCTTTACTTCTGACAAGAAACGAGgtgagAAACATTGCCGTCAGTCACACCTTTAAAATCGAGAAGGCGCAGCGAGAACTGGGCTTCAGTCCTGAGAGATACAGCCTGAAAGACTCGGTGGATCAGTACCTGCGGAGCCGGCCGCCGCGCTCAGCTGCATCGTTACTGAACACAcgcttcctcttcctgctgCTCCTGCTGCTCCTGACGGGAGTCATCGCCCTCACGATCTGCCGCCAGTAAACACACCTCCACACTTCTCGTCGGTCCCTTGTAGGGTTTGAACGGGGGCTGGGCGATACAGTAAATTCAACATTGAGCatatcttttattttgacattatttttcgACAACGCTAtcgttaaattaattttaaactttGAGAGCGTTGcttctgtcatcaattactcatTTTAATGCCATCTCAAGAACCAGTGAGGTGTGTGAAACACACAAGCTTTATATTACGGGTTTTATGGTTTTgttggtgagtaaatgacgacagcattttctttttgagGTGAACTCTTGTCTCTTTAAGACAGATctacaataaaatacacttaaagTTATAACGTATACTTAGAAAAGTATGTATAAGTAACTGTCCACTTCagttaattcaataaaaattaagGTCTCTTAACTAGTCGCTTATTGGCATGCATACTAgaatattaaccatttattagttattaaacacatattaatgcctatCCCTaacacctaaacttaacaactaccttattaactattaataagctgcaaatgaagaatttattgagagaaaagtcgTGGTTAATAGTAAGTGCTTGCTCCCCGTTTTAAAGTTTTACCAAAACGATTAATTTGTGCCATcactaatataatttaaataaaaataacccgCCGTTATAATTAgtgtatattgttttatattcatgatgtatttaaaacaaagaaaaatgcaatgattattttaaattaatttaatcaggctatgtaatatataataggCTATAATGGCTGTTTGGTTCAGATGCCCgtttcatttattgaattatttatttgcttgctatATCGCTCACCCGTATTTTGAACCTACGGTGTTTCCGGATCAGATCATGAAGCACAGAGCTGCACCACCTCAGAAACAAAACCACTATGATTGTACGTAAAATACAGTCCTGATCAAATATAGGCGTGCGATGTGgtgtaaaactaaaatataaccTGCGGAGTATATCTTTGACCGTGACGAACAGAAGGAAATTGCTAGTAGtacgttttaaaatgatgtCTGTTAGTACCTAGACCAGAATTCACTTATTTATAGCTTCTTTTTTATCGAGTCTTCAGTCCGTGTAACTCTGAATCGTGATGTACATTAAATACGTTGTTTGTGTTAAAAGTTAGTGTTGGTGAATTCTACTATTAtggctttaatttatttaagttttttgcCCACGGTCTTCCATAAAACGAAGCGCGTGTATAGTCGCACTTCCTGAACGTGCGCACTGCAAAAGAAACGCTCGTTCATTTCGGTACGCGCCGTTTTTCATTCGCATTCCTTTCATTAGCGCTCTATTTACATGTTCATACCGAGTTGTATGTTGCTCGGATGAAGGCCTTTCGCCTCGACCTCGACTAAGAAGCAGTTTGAAAGAAAGCATATCAATACTGAGACAGAAAGAACCAGGGCAATGCTTACTCTACGCAAGTCATAGTCACTTCAacacactcttttttttagTATCACCCCATATGAACTGTGCCGGTGTGTGTTTGGGAACGAGtgagattgagtgtgtgtgtgtgctcacatCCGCTGAAGTATTACATTTGTGTCATAAGTGTTCATTTTTCGGTCAAACACAAGCAACTTCAACTCAGCTGACATATAAATAACAGAGTGGTGTGTTTGGAAATACTATAAATGTCCGGAGGGAGATTTTTTTGATGTGCAAAGCGAGGTTTGAAGCAACTAATATTTACCAGCGTCTTACACATTCGAAGCATTAAAGCAGTAAATGTATGCCATGCGAGGCATTCATGAACgccaatgaaatgttttatattccAAAGTGTACACCGACATAATCTTTCATTTTGCTTTGTACTACCAGCTGTTGTCTTTTAAGACTTTGCGCGCTGTTTTCCAGATATCTCTTAGGTTTGTGATGAGTTACAAATGTGACGCGAGATAGCTGTTCAGCAGTTATAAATGAACAAGTTGAATAAAATGTGCTGTGAACCCTCTTGCTATTAAAGCCTTGCATTTTCTTCAACGGTTTACTTAAACTTCGCCTCATTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114679 lncRNA downstream 57543 14495498 ~ 14497454 (-) True G77514
XR_006251945.1 lncRNA downstream 89677 14460368 ~ 14465320 (-) True LOC122353010
TU114626 lncRNA downstream 129510 14424513 ~ 14425487 (-) True G77480
TU114621 lncRNA downstream 186442 14366281 ~ 14368555 (-) True G77476
TU114604 lncRNA downstream 193263 14361354 ~ 14361734 (-) True G77472
TU114743 lncRNA upstream 20213 14588406 ~ 14589880 (-) False vwa3a
TU114876 lncRNA upstream 533956 15102149 ~ 15103569 (-) True G77669
TU114879 lncRNA upstream 570414 15138607 ~ 15139007 (-) True G77672
TU114881 lncRNA upstream 588156 15156349 ~ 15156591 (-) True G77674
TU114883 lncRNA upstream 591272 15159465 ~ 15159847 (-) True G77676
XM_043250548.1 mRNA downstream 8846 14541530 ~ 14546151 (-) True mfsd13al
XM_043250726.1 mRNA downstream 14159 14532487 ~ 14540838 (-) True si:ch211-165g14.1
XM_043250843.1 mRNA downstream 66463 14485329 ~ 14488534 (-) False dhrs7ca
XM_043250842.1 mRNA downstream 66463 14485329 ~ 14488534 (-) True dhrs7ca
XM_043249856.1 mRNA downstream 69705 14484799 ~ 14485292 (-) True im:6904045
XM_043250015.1 mRNA upstream 137 14568330 ~ 14589895 (-) False vwa3a
XM_043250016.1 mRNA upstream 137 14568330 ~ 14589895 (-) True vwa3a
XM_043250050.1 mRNA upstream 22826 14591019 ~ 14611223 (-) True mosmoa
XM_043250047.1 mRNA upstream 43608 14611801 ~ 14618610 (-) True LOC122352591
XM_043250046.1 mRNA upstream 52793 14620986 ~ 14629074 (-) True si:ch211-256e16.3
TU114673 other downstream 69727 14484817 ~ 14485270 (-) False im:6904045
XR_006251944.1 other downstream 73548 14467186 ~ 14481449 (-) False LOC122353009
TU114670 other downstream 73560 14474120 ~ 14481437 (-) True LOC122353009
TU114597 other downstream 211985 14340046 ~ 14343012 (-) True G77465
TU114559 other downstream 290675 14234506 ~ 14264322 (-) True G77443
XR_006251888.1 other upstream 1168 14569361 ~ 14589899 (-) False vwa3a
TU114878 other upstream 538944 15107137 ~ 15107752 (-) True G77671
XR_006251922.1 other upstream 661776 15229969 ~ 15289672 (-) False LOC122352744
TU114910 other upstream 789492 15357685 ~ 15358232 (-) True G77702
TU115089 other upstream 1325490 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile