RNA id: XM_043250046.1


Basic Information

Item Value
RNA id XM_043250046.1
length 2954
RNA type mRNA
GC content 0.52
exon number 11
gene id si:ch211-256e16.3
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14620986 ~ 14629074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTCTGCTCATTCCTGCGCCTCAGtctgtttttaaagaagaaGACATGGCGTCACGACTCTTCATAAACAGTTGCAGGTGAAGATATGAAGATTTTGAGCTGCCGTATAAACATAGACATGTTTTTCGCCTGATTGAGTGTTAAGATGGAAATTATGGCTGTGAACCTGCTGGCCACCTCTCCGTCCACCTCCACGCTCCCTCCGTCTCCGTGTGTGGAGGACTCCGGTTTCCCGTTGTCCTCTCTGGACAGCGAAGACTACGTGTTTGTGGAAACGCGGCATCCCAACAAAGTGCTGGAGGGTTTGAACAGCTTGCGGCTCAATAACGCCTTCTGCGATGTGACTCTGTGCTGCGGAGGGCAGGAGTTTCCCTGTCACCGCATTGTACTGGCCTCCTTCAGCTCTTATTTTCAGGCCATGTTCTCCACCGACCTGATGGAGTCTCGTCAGGAGCGGGTGGCCATCAACGGCGTGGAGCCCCAGATGATCGGCATGCTGGTGAGCTACGCCTACACAGCAGAGGTGGTGATCTCCAAGGCGAACGTGCAGGCGCTCCTGGCGGCCGCCAATCTGCTGGACGTGATGGCGGTGCGGGAGGCCTGCTGCAGGTTCATGGAGCGACAGATGGACGAGATGAACTGTGTGGGCATCCACTGCTTCGCCGAGGCGCACTCGTGCCGAGAGCTGGAGCGACGCAGCATGGAGTACATCCAGCAGCACTTCAGCACCGTTTGCCAACAGGAGGAGTTTCTGTCTCTTTGTGCCGATAAACTGACCGAGATCGTTTCAAGTGACCATCTGAATGTGCCGAAAGAGGAGACGGTGTTTGAGGCGGCCGTCGTGTGGCTGGAGAAGAACCCTTCACGCAGACAGAGCTTCGAGAAGGTTCTGGAGCACATCAGACTGCCCCTAATCAGTCCGTACTACATTCACGACGTCATCGAGACTCTGGACGTTGTGAAGGAGTCGCTCAAGTGCCAGAAGCTGATCTCTGAAGCCAAGGACTATCTACTGCTGCAGGACCGCAGAGGAGAGCTGTACAGCCCTCGAGCGCGACCCCGGCGAGCAACAGGCACAGCTGAGGTGATTGTGACCGTGGGAGGAGAAGACGATAAGGTTGTTCTACGCAGCGTGGAGAGTTTCGATCCCCTCACCAGTCAGTGGAAGAGCCTGGCCTGCCTGCCCTTCGCCGTCAGCAAACACGGCTTGGTCGTGTCTGGCTCCATGCTGTATTTGGCTGGCGGCGAGTTCCCAGACGGCTCGGCCAGCAGAGAGATGTGGCGTTATGACCCGTGTTTCGACTCCTGGACAGAGATGGCACCCATGAACGTGGCTAGATCAGAACTAGGGTTGGTGATGCTGGATGGATACGTCTTTGCTGTGGGAGGCTGGGAAGGCCGTTCTCGCCTGGACTCTGTCGAGTGTTACAATCCTCAGACGAACACTTGGCAGTTTATGGAATCGGTCAAGATGGCGGTCACCAGTCCGGCTGTGGTGGCGCTGGATGGATTGCTCTATGTGACAGGAGGTGCTGTTTTAGAAGACGGCGACGGCACAAACTTGGCGCAAGTGTACAACCCTAAAACGTGCGTGTGGGCAGAGGTGGCGCCCATGCAGATCGCCCGCTCTGGATCTGCTGCCTGCATCCTGAAGGGCAAGATATATGTCATAGGTGGCTGGCACGCGTCCACCGAGAACACTGATAAGGTGGAGTGCTACGACCCCAAGACCAACAAGTGGACCATGTGTGCTCCCATGAAGGAGAGGCGTTATCGGCCCGGCGTGGCGGTGGTGGACGGAAAGATTTACGTTTTAGGAGGAGAGGAGGGATGGGACAGGTACCATGACACTATAGAGCGGTACTGTGAGGAGTCGGACAGCTGGGAGATCGTCGGAGAGATGCCCACCAGCCGAAGCTGGCTGAGCTGTGTCTCTCTGCAGCTCCGGAAGGACACTCAGGTGGGCAGCCGTCCCGGCACTGCCTTGGAGACGGAGTTTCCCGTGGACTGAGAGGACCAGAGCTCCACCCGCATCACTGCCAGCCGAGACGGCTGCTTTCAGAGCGTCCCGCTCCGCCAGAGCTATTGAGGAACGGAAAAGGTCCGACCCAAACTCTGGAGGGTCTTCAGAAAATACTCGTGTCATAAGCTATGCTTTCTCCAGCCTGACCCTCTAGCACGGTGTGAGGCTGGATGGATCGATGATATCTgtggtgtttttgtgtgtgtgtgtgtgtgtgtgtgtgaagcgcCATCCCAGAGTCTCCACAGTATCAGTTCAATGTGATGTTCAAGTGACGTACAGGGTTCCTTCCATGCGCTGAGCACCTCATGATTGTGACTTAACACAAGTACCTTTGTTTTCTAACAGTGTTGTAGTGAAacgttttgtaatttttgtacggtgatttttgttgtttttgtatttattggaCGTTTTTTGTTGTACTGAGAGATTTATGGAGTAACTAGCACAGATACACTGAAACGTGACtttctttaaaggaaaagttcacccaaaaattgtAATTGTCATCATTTGTTTTACTCTCAAGTCTTTTGTTGAACACACGATGATGGTGAGCAGTTTCTGTGCCGTTGACCTCCATAATAtaaaagtcaatggggaccagaAACTGTAccaacattcaaatgttttgttgtttttaacatatGAAAGATGCTCATATAGGTTTAGAATaacttaagggtgagtaaatgatgacagatgttttatttagggtgagctatcccttttaAAACCGTAATTAGTCTTCATATTGTgcacagtatgtatgtatgtatacccAGATTACCTTCTACATTTGCCAAAATGTTTAGCATACAGAAGAGCACAGCGTGCTGGGTATtgtttcccacaatgcaatgtgtTCAGCTCAATCATCCACAGTATGAAGAATGAACCTGAATTACAGCTGCATTTTTACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114743 lncRNA downstream 31106 14588406 ~ 14589880 (-) False vwa3a
TU114679 lncRNA downstream 123532 14495498 ~ 14497454 (-) True G77514
XR_006251945.1 lncRNA downstream 155666 14460368 ~ 14465320 (-) True LOC122353010
TU114626 lncRNA downstream 195499 14424513 ~ 14425487 (-) True G77480
TU114621 lncRNA downstream 252431 14366281 ~ 14368555 (-) True G77476
TU114876 lncRNA upstream 473075 15102149 ~ 15103569 (-) True G77669
TU114879 lncRNA upstream 509533 15138607 ~ 15139007 (-) True G77672
TU114881 lncRNA upstream 527275 15156349 ~ 15156591 (-) True G77674
TU114883 lncRNA upstream 530391 15159465 ~ 15159847 (-) True G77676
TU114900 lncRNA upstream 644839 15273913 ~ 15276004 (-) True G77692
XM_043250047.1 mRNA downstream 2376 14611801 ~ 14618610 (-) True LOC122352591
XM_043250050.1 mRNA downstream 9763 14591019 ~ 14611223 (-) True mosmoa
XM_043250015.1 mRNA downstream 31091 14568330 ~ 14589895 (-) False vwa3a
XM_043250016.1 mRNA downstream 31091 14568330 ~ 14589895 (-) True vwa3a
XM_043250044.1 mRNA downstream 52793 14554997 ~ 14568193 (-) False sdr42e2
XM_043249857.1 mRNA upstream 482338 15111412 ~ 15115448 (-) True LOC122352450
XM_043250334.1 mRNA upstream 604067 15233141 ~ 15289672 (-) False LOC122352744
XM_043250333.1 mRNA upstream 604067 15233141 ~ 15289672 (-) True LOC122352744
XM_043249858.1 mRNA upstream 676461 15305535 ~ 15306408 (-) True LOC122352451
XM_043250086.1 mRNA upstream 678825 15307899 ~ 15314674 (-) False LOC122352614
XR_006251888.1 other downstream 31087 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 135716 14484817 ~ 14485270 (-) False im:6904045
XR_006251944.1 other downstream 139537 14467186 ~ 14481449 (-) False LOC122353009
TU114670 other downstream 139549 14474120 ~ 14481437 (-) True LOC122353009
TU114597 other downstream 277974 14340046 ~ 14343012 (-) True G77465
TU114878 other upstream 478063 15107137 ~ 15107752 (-) True G77671
XR_006251922.1 other upstream 600895 15229969 ~ 15289672 (-) False LOC122352744
TU114910 other upstream 728611 15357685 ~ 15358232 (-) True G77702
TU115089 other upstream 1264609 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 1387597 16016671 ~ 16017770 (-) False LOC122352931

Expression Profile