RNA id: XR_006251892.1


Basic Information

Item Value
RNA id XR_006251892.1
length 1449
RNA type transcript
GC content 0.48
exon number 15
gene id arrb2a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7872539 ~ 7880100 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACGGTAGCTCCGCCCACCTCCAGCTACAGGAGCTGCTGCTGTTTACACTCTTGTGCGCCGTAGCAGTGTGTTTTCCTCCACAAATTCCCACGGCCAAATTCTCCCTCATTATGGGGGACAAGGCAGGCACCCGGGTCTTTAAGAAATCCAGTCCAAATTGCaagCTTACGGTATATTTGGGAAAAAGAGATTTTGTGGATCATCTAGATCATGTGGACCCTGTTGATGGCGTGATTCTGGTCGAACCTGAATATCTCAAAGATAGGAAAGTATTTGTGACCTTAACCTGTGCTTTCCGGTATGGCCGTGAGGACCTTGACGTTCTAGGCCTCTCCTTCCGAAAAGATCTCTACATCTATACTTTTCAGGCCTATCCTCCCATTCCAGAGGAATCCAAGCCCCACAGTCGTCTGCAGGAGAGGCTTTTGAAGAAACTAGGACAGAATGCCTATCCTTTTCATTTCACTATACCGCAAAACTTGCCATGTTCTGTTACTCTGCAGCCTGGGCCTGAGGACACAGGAAAAGCATGTGGTGTGGATTTTGAGATCAGGGCTTTCTGCGCCAAAACGATGGAAGAGAAGAACCACAAAAGGAACTCTGTGCGACTAGTGATACGCAAAGTCCAGTATGCTCCTGAGAAACCCGGCCCACAGCCGATGGTGGAGACGACGAGGAGTTTCCTCATGTCAGACCGGTCCTTACACCTAGAGGCTTCACTAGATAAAGAGCTGTATTACCATGGGGAACCCATCAGTGTTAACGTCCATGTTACCAACAACTCAACCAAGACTGTCAAAAGGGTTAAAATATCAGTACGACAGTATGCTGATATCTGTCTCTTCAGTACAGCACAGTACAAATGTCCAGTGGCTCAGATCGAGGCAGATGATCAGGTGGCCTCCAGCTCTACTTTTTGTAAAGtatacacactcacacccaCTCTCAACAACAACCGAGAGAAGAGAGGACTGGCGCTGGACGGAAAACTCAAGCATGAGGACACCAACCTGGCGTCCAGTACTATTGTGAAGGACGTGAGTAATAAGGAAGTTCTGGGTGTCCTGGTGTCCTATCGGGTCAAAATCAAGCTGGTGGTGTCCCGTGGAGGAGTGCTGTACTTTAGCTGTTAAAATATTGCAGGATGCTGagctttgtgttttatattccCTCCCTGAACCCTCGCCTCTCTGTGCTGCTTCGTTCTGGTTATCAAATCATTTTGCCATTCTCCCATTgttttatgtctctctctctttctgtgtgtttccTTCCCTTCCATCTGTCTCTTGCGTCAGGCTTTTAAGCAGCTTGCTGGAGAGGGACGTCTCAGTGGAACTGCCTTTTGTCTTAATGCATCCAAAACCTACAGATTCCACCCTTCTACATTCAACCTCAGCTGCTCCAATGTTGGATCCACCAATTGACACCAACTTGATAGAGTTCG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111922 lncRNA upstream 12827 7840598 ~ 7859712 (+) True G75591
TU111925 lncRNA upstream 23303 7845219 ~ 7849236 (+) True G75593
TU111910 lncRNA upstream 37640 7806361 ~ 7834899 (+) True G75583
TU111912 lncRNA upstream 50021 7819315 ~ 7822518 (+) False si:ch211-237l4.6
TU111884 lncRNA upstream 190099 7682154 ~ 7682440 (+) True G75574
TU111946 lncRNA downstream 21982 7901223 ~ 7902731 (+) True G75607
TU111975 lncRNA downstream 156893 8036134 ~ 8069911 (+) True G75629
TU112150 lncRNA downstream 286207 8165448 ~ 8165704 (+) True G75766
TU112158 lncRNA downstream 405914 8285155 ~ 8285865 (+) True G75774
TU112188 lncRNA downstream 434320 8313561 ~ 8314122 (+) True G75799
XM_043249932.1 mRNA upstream 1091 7866335 ~ 7871448 (+) False ap4m1
XM_043249931.1 mRNA upstream 1091 7866338 ~ 7871448 (+) True ap4m1
XM_043249958.1 mRNA upstream 50202 7817810 ~ 7822337 (+) True si:ch211-237l4.6
XM_043249980.1 mRNA upstream 54838 7812206 ~ 7817701 (+) True tmem88a
XM_043250347.1 mRNA upstream 62456 7790198 ~ 7810083 (+) False kdm6bb
XM_043250076.1 mRNA downstream 2644 7881885 ~ 7883525 (+) True med11
XM_043250075.1 mRNA downstream 2870 7882111 ~ 7883525 (+) False med11
XM_043250074.1 mRNA downstream 6373 7885614 ~ 7889230 (+) True c10h17orf49
XM_043249962.1 mRNA downstream 52842 7932083 ~ 7936387 (+) True si:dkey-175g6.2
XM_043250167.1 mRNA downstream 68065 7947306 ~ 7951626 (+) True slc25a1a
XR_006252002.1 other upstream 8627 7863779 ~ 7863912 (+) True LOC122353466
unassigned_transcript_1471 other upstream 10506 7861960 ~ 7862033 (+) True trnat-agu_2
unassigned_transcript_1470 other upstream 10865 7861593 ~ 7861674 (+) True trnas-gcu_13
XR_006252001.1 other upstream 11160 7861246 ~ 7861379 (+) True LOC122353465
TU111766 other upstream 507208 7360984 ~ 7365331 (+) True G75496
TU112127 other downstream 222235 8101476 ~ 8102924 (+) True G75750
TU112216 other downstream 701058 8580299 ~ 8581102 (+) False LOC122352912
TU112405 other downstream 833962 8713203 ~ 8716277 (+) True G75935
TU112407 other downstream 854538 8733779 ~ 8734996 (+) True G75937
TU112450 other downstream 1270550 9149791 ~ 9152619 (+) False gbe1a

Expression Profile