RNA id: XM_043250086.1


Basic Information

Item Value
RNA id XM_043250086.1
length 1815
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC122352614
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15307899 ~ 15315868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaacccacacgaagaagttcgtatgatgcaagttttaagttgaagtCCATCGATCTCGCTATACAAGAAGGAAACCGCGCTGCTGCTCGGAAGCTTAGCGTCAATGAGTCTATGGtgagacgctggaggaggcagcgggaagagcaaaacttttttaaatagagcggatgcggcttatatgcagCCTGCTGTGTTGGATAACTTGCTGACAAATATGAAGTTTGTGCTGCATGGCATGGGAATGCTGCGCATTAATTTgtcaaacaagaaaaacaagGCCCACGCACGCGCAATCTTGTCATGTAAGTGTTGTGTAGGAGAGGATATGGAGCTGCTGCCATTTGTGGCTTATTCATTCTGCAGTCTGTGGGGGGATCTGGGCATGAGGACAGCAGTGTCCAGAGGCCATGAGTTCCAGCTCAATGATTCTGCATTATATTTTTTTGAGAACATAAGTCGCATCATCGCTCCAAACTACATCCCCACTAAAACAGATGTCCTCAGAGTGAGAGTAAGGACTCAGGGTGTCATTGAAAGCCAGTTCAGAGTCAACAACTCACTGTACAGgcTATATGATGTGGGTGGTCATTgttcagaaagaaagaagtggtACAGTTATTTTGACAGTGTCCAGGCAGTGCTGTTTATGGTGGCTCTTAGTGGGTATGATCAAAATCTTCATGAAAATCATTCCAAGAACCGTCTCCATGAAAGCCTGGAATACTTCAGATCCACGTGTAACAGTATGTTTTTCAGAGGAACTTCTTTGgttttattcatgaacaaaattgatttatttgctgAGAAAATACTGTATTCTGGAAGACATCTGCGACTTTATCAGCCAGGTTTCAAAGGTTCTGACTGTGATGTAagttgtgctgctcaatatgTAACTAACCAGTTTGTGGAATGTGCTACCACCTCAGGCAAGATGGTGTACTCTCACTTCACCAATGCCACAGACCCCTCCAGCGTACATGAAGCCTTCCAGCTCATCATGAGCACTATTGTTAAACATAACCTTCAAACAATCTCACTactctaattttttttttttaatattcccatttttatttttgtctgctgtttgtctatttttaataaaatagcctTTTTAATGGATCAGGTAAtccatatataaataaatgtgtttttataatgttttaattacgAGCCTCTTTAATTTGTTACCTGcttaatttacataattgtgggatcattaaagtgttttaattgattcgtttaaaagtatacatttcacTCACTAaagagagattttaaatatatgtaaagcaaatatatatgcGGTGTTTCGAGCTCACGTTCAAAGACCAAGACTACAGAAAGCACATCATGTTTGCtttaattatttcacaaaaatgtgaagTGCACACAAATAAACGCAATCTTTAGCGATGTACTACTCCTAAAGATGTACTACTCCTGTTTGGCCAAAAATTTGCAGCATTTTAAGCGCAAGTAAGTGCTCAGCCACCTTCATCTATCCTGAAGCGAGTGAGCGCTTTTCACGCTGCCCACACACTTCAACAGCACACATTTCTCTGGGTTAACATTAGATTGAGCAGCATTGTAAAGTTGCTAATGcttacatatttcatatatacacataattcaCATGAAACATTCACACTAATCATATTTGAGGTCGTTGAGGAGAGCGTTGGATGCACTTGATTGTTTTATCATAGACTAGTCTAACGACCTGTTAAATGACTTCGCCGGGTTTTTTAAGAGACTGATAAAAATTTGGTTGACCAAACCTCTTCTAGTCGACTAACTTTGTGGTTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114900 lncRNA downstream 31895 15273913 ~ 15276004 (-) True G77692
TU114883 lncRNA downstream 148052 15159465 ~ 15159847 (-) True G77676
TU114881 lncRNA downstream 151308 15156349 ~ 15156591 (-) True G77674
TU114879 lncRNA downstream 168892 15138607 ~ 15139007 (-) True G77672
TU114876 lncRNA downstream 204330 15102149 ~ 15103569 (-) True G77669
TU114908 lncRNA upstream 30326 15345000 ~ 15347289 (-) True G77700
TU114911 lncRNA upstream 53727 15368401 ~ 15368676 (-) True G77703
TU114914 lncRNA upstream 77414 15392088 ~ 15394552 (-) True G77706
TU114936 lncRNA upstream 329729 15644403 ~ 15647863 (-) True G77715
XR_006251906.1 lncRNA upstream 512410 15827084 ~ 15827556 (-) True LOC122352661
XM_043249858.1 mRNA downstream 1491 15305535 ~ 15306408 (-) True LOC122352451
XM_043250334.1 mRNA downstream 18227 15233141 ~ 15289672 (-) False LOC122352744
XM_043250333.1 mRNA downstream 18227 15233141 ~ 15289672 (-) True LOC122352744
XM_043249857.1 mRNA downstream 192451 15111412 ~ 15115448 (-) True LOC122352450
XM_043250046.1 mRNA downstream 678825 14620986 ~ 14629074 (-) True si:ch211-256e16.3
XM_043251064.1 mRNA upstream 1974 15316648 ~ 15341965 (-) True LOC122353145
XM_043250840.1 mRNA upstream 32793 15347467 ~ 15362276 (-) True mafga
XM_043250839.1 mRNA upstream 32793 15347467 ~ 15361822 (-) False mafga
XM_043250901.1 mRNA upstream 368597 15683271 ~ 15684293 (-) True LOC122353069
XM_043249865.1 mRNA upstream 380746 15695420 ~ 15697678 (-) True LOC122352456
XR_006251922.1 other downstream 18227 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 200147 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 718000 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 822629 14484817 ~ 14485270 (-) False im:6904045
TU114670 other downstream 826462 14474120 ~ 14481437 (-) True LOC122353009
TU114910 other upstream 43011 15357685 ~ 15358232 (-) True G77702
TU115089 other upstream 579009 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 701997 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 715853 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 804112 16118786 ~ 16118856 (-) True trnag-gcc_65

Expression Profile