RNA id: XM_043250132.1



Basic Information


Item Value
RNA id XM_043250132.1
length 5235
RNA type mRNA
GC content 0.45
exon number 26
gene id LOC122352632
representative False

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10289532 ~ 10303026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGGGATATATTATGGCCGAAGAACTGTCTGTACCTCTGTCCGTGGTGCTGGATTTTATAACGCGTGACCCGCACTACAGTGTGACGCTTGCAATTTAATCCAATCAGGTCGGATTCGAGCAAATTAGACAAAACTATGGTTTCTTAGCAATATTTCGTTCTGCGTGAGAGTGCCATGTATCATAGGTGTGACAGTAATGAGCAGATAAGTGCGGTCAAGGTGTCGTCGGCACTGCAGCATCCGCTCTGCGGCTGATCGCTgctcgctgctgctgctgctgctgctgctcacaGTCCCGCAGACAAAGTCATGGAGGGAGGGAAGTTGTGAGGCTAAGAAGTGGGTCTACGTCCCTACGAAACGGGCAAATTAGAAACAATGGCGGAGGCTAATCCGCTCAGTGGACTGCCCCGGATCCAGAGGGCTGCGATGTCATTCCCTGGACATCTGCACTTAGTTCTAGTGCTGAGACCCAAAACCCACCTGCAGACCACTGGAACAGACCTCGGTTTCCGCTTTAGTCAGGATGACTTCGCTCTCAAGATGCCGATGGTAATGCTGAGCTCCCTGACAGACCTGCTTCGCTTCATTGATGAAAATCAACTGAGCACTGAGTTTGGCGGCACGCTGGAGGAATGCCATAGCGACTGGATAGTTCTGCAAACAGCTATAGAGAGTTTTGCAGTGACAGTGAAGGAGATTGCTCAATTGCTGCAGACCTTCGGCACAGAGCTGTCTGAGATCGAGCTGCCTGATGAAGCCAGCGGCATTGAGTACCTGCTCACATCACACactgagaaatacaggcagatgAAGGATAACATTAGGTCAGTTATGAGGGAAGGACGTCAGCTTCTCTCAAACCTCGAGGCCTCTAAAGCTGTGGAAGGTGCTGCAGCAGAAGACAGGGATATCAGccaagacaaagaaagagtgcAGAGgCTCGTGGCACAGTTACGGGACATGGAACTGGCTTTTGATGGCTTTTTTGAGAAGCACCACCTCAAGCTCCAACAATACCTTCAACTGCTCCAGTACGAGATGAGCTTCCACGAGATGGAAGCCATTCTGGAGAAACTCAATGCACAGGAGAAAGCCATCTCATCTGTGGGGACAACAGTGGCTCAGACGGAGCAGCTGCTCAAAGACCTCGAGATGCTGGAAACCACAGCAGAGGAAGAAATGGGCCGTGCTCAGATTATTATTCTGCATGGGCACCAGCTGGCAGCGAGTCATCACTACGCTCTTGCCCTAATAGTTCAGCGCTGCAATGAACTGAGGCATCACTCTGACACCCTCACTACAGCTCTGCGGGCCAAGCGGGCGTCTCTCACGCGCATACGAGACCTGTTGTTGCGGTTGGAGGAGACTGTGCGTTGGTGTGATGAGGGGGCCTATCTGCTGGCTAACCAGCTGCTGGATAAGTTTCAGTCCAAAGAGGGGGCGCAGGCAGCCCTGCAGGACATTGAGAGACTGATGGAGACGGCATCCTCAGTGGTGCGGTCCAACCCAGACGTTCTCAGTCTGGAGTTTGAGGCAATACTCACACCACAGCTGCAGTCTCAGATAGAGGCTGTCACAGAGAAGCTATCAACAGTGCAGGGAATGATCCAGAGCAGACAGGCCTGTCTGAGGAAACTGGCTGATATTCAGGTCAGACCCATCCAGCTAGTCGCCCCAAGGCCCGAGAACTCACCACGCTGCAAATCCCCTGGATTCTCTCCTAAACACAGTTTTGACGTGAACTCCAGTTTAAGGTTTTCTTTTGATCTTGCACTTCCTGGTAAAAGGGCCTCACGGAAAGGTCCCAGCACTAAAAAGATAGAGGTCATGCACGATTACGAGGAGAACCGCAGCTGTCTGTCTTACAGCCCAGAGGGAGTTGAGAACCCCGACCAGCACAAACGCCACGTTATGAAGGAGCTGATTGAGACGGAGAGAATCTATGTGGATGAGCTGCTGTCTGTTTTACTGGGTTACAGGACAGAGATGGATAACCCATCTCTCTCTAATATACTGCCATCTGTACTGCGAAACAAGAAAGAAGAGCTGTTCGGAAATCTGCCGGAGATCTATAAATTCCACAGCAGGATATTCTTGCAGGACCTTGAGAGCTGCTTAGAGACCCCGGAAAGAGTGGGAGCACGCTTTCTGGAACGGaaAGAAAATTTTCAGGTTTACGAGCGCTACTGCCAGAACAAACCTCGCTCCGATGCCCTCTGGAGGCAGTGTTCAGATTCATCCTTCATCCAGGAGTGCAAAAAGAAGCTGGATCATAAACTGGGTCTGGATTCATATTTGTTGAAACCAGTTCAACGTTTAACCAAGTACCAGCTTCTTCTGAAGGAACTGCTAAAACACAGCTCAAACTCACAGTATTCATCTGAGCTGCAGGGGGCGCTAAATGCCATGCTGGACCTCCTCAAGTCCGTCAATGACTCCATGCATCAGATTGCCATCACTGGTTATGAGGGCGAACTGAGTGATCTGGGCCGCGTCCTTATGCAGGGGTCTTTCAACGTCTGGATCAACCATAGGAAAGGGCCAACACGCATGAAAGACATGGCTCGCTTTAAACCAATGCAAAGGCATCTGTTCCTTCACGAAAGAGCCCTGCTTTTCTGcaagaagagagaggagagcgGAGAGGCACATGATCGGACAGCCTCTTACAGCTTCAAACACTGCCTCATGATGAGTGCTGTTGGTATCACAGAAAACGTCAAAGGGGACGTAAAGAAGTTTGAAATCTGGTATAACGGAAAAGAGGAGGTGTATGTTGTTCAGgcTTCAACTGTAGATGTGAAGATTGCATGGCTCACTGAGATTCGAAAAATCCTCAACAATCAGCAAAAGCCTGACAAAGGTAATGCTCACCAGGACGGTGAGCAGCCATTATCTCCACCCTTGGCCTACAGCAAGCTCCAGGGGGCGTCCGTCAGCTCGGAGGAGGCCGATTCAGGCCGAGTGAGTCCGGTTCTGACAGACCCGGTCATCGTTTCTCCCCGTCCTCGGCACCACAACCGCCGCAGCTGGCCAGGGACATCTCACTCAGTGGATATCTGTGAGGGTCTGGAGGACTGGACCACTGACCTTTCAAACATCTCAGACTCTGACGAAGAAGATGATGTGCTGCTGGTTCCTGGAAGGTATAGAGCAATGGTGGACCATTTGAAATGTGGCAAGGATGATGTAATCATCAAATGTGGTGATGTCATTCACGTGTTGCAGGAGAGCGCCATGGGTCTTTGGCACGTTAAGAATTTGACTCGTGGAGGTGAAGGAAAACTTCCTGTTGATACACTGCTGAGAATGCTGGGAGATGCAGGCAGAAGTCCCTCCATTAAATCAGGAGGGGGGCTTATGGTGAGCGAAATTTCATAAGAATACTATAttctaaaattttattttaaagagacaAACTGATTGTTAGTTTTGTCagatctgaacacacacagtAATATCCCGCAACTGAAGCTTTTCTTTCTCTAAAGCAGTCCGCTGTTGTTTCATAGGTACGGGAAATATAAACAACAGGAAGCCAAGCAACACCTAAGTACATAAACCACATGTACACAAAGCTCACACCATGTGACAACCCTAAAGGCCATTACTGTCATTCAGGACCCAGTCCAGTCACGCCAACCTgaagcacacaaacaaacaccaaGTCAGGAAAACAGAGCTGCCTAGTTGAGAGAAAGtttccatctgccatcagtggggATTTTGGATTATGCTGGATTTAAAGACATCTCCTCGAATGAGCCAATGACCACACCTACAACAATACAATCTGGAAATAAAAGGAGCTTTGCAAAGCACTTTACACTGATCCACTTCATCCCTGGAAAGTACCATCACCATGCTGTGCCATAACATGATATAAACCATGTATTTGTGTAGTTAGCGcagtattttagtatatattaaaacaggaaGGTTTATGGCATGGGATATAAACTGGCCTGAGAGAATAGCAGACTATTCTCTCCTTTGATAGGTATAGCGGTTGGacacttgttttaaaaagccattttaagtCTTACATACCAGTGCTAcaatgaaagaaagataaactGAACAGTAGTATCTAGTTTATGTGCCAAAAACCTAACATTCCATACCTAAAACTTCCAGATTAACActaattcctcttttttttattactctgACTTTACTTTGGCATAAGTATTTCTCCAAGAAATATTTCAGAGAACaatgtaaaagaaatattatttcagagAATATGTGATGTGAAAGATTTACAAATCACTGGTCAGCAACGTGACTGCTTTACTGCTTTACAgttatgcataaaaacatactgCTCACCTTCAGATGATCCaagtttatattcatattcactTTACGTCAGTTCAAATATGGCTGTTCTGGACTACTTAGCAAATTTTCTTAGTTaacaaagtgtttttatatgGGTTTACTGTAATAACTGcacaattcattttgttttaatcctCCACCATATGAAGTCCACTGTAAACTTTTTTGCGTTACACTTCCTGCAATCACAATGTGTATTTAACTTTTGTTAACCGCTGTAGGAACCATTGAAGTAAATTTACATTAGCTAAGCTCATTAAAAACGgcaatgaataaatacagtacagtttaaaagtttggggtcagtaagatttttactacgatttttttttaaagaaattaatacttttaaccagaaattatgcattatacTGATTTCTACAAAACACCATATTTAGCAGCGGTtgtcagcactgataataataggaaatgtttCCTGAGACCAATTAAGCATGATTTCCCTAAAAACATGTGAAACTgtaaactggagtaatgactcttaaaaattcagcttcggcatcacaagaataaattacattgtaaaactgttttaaaaacaaccccaaacttttgaaaagtagtgtacATTTGCATGCCATTAATTTAAAAGAGGGCTTGACAAGGGAGAAGAAAAGTGGATGTGGACTGAATGGGTTTGATGTGTACTTCACTATGAAGTACACTTCTTAAAGCCATACACTTCAAGTGTATAATATGTACAGAGTTACTATGATGAAAGTGACCTCACAATGCTTTGTGGTATATCGTGtatgaaaataatttcactAGATGTACAAGCACAAAGTGTAAGATGgaaaactatattttttcttGATTGTTACAGTGTGTCTGTTGAATGATGACTAGTAAACATCATCTGTACAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU113074 lncRNA downstream 35671 10253025 ~ 10253861 (-) True G76421
TU113066 lncRNA downstream 47350 10241959 ~ 10242182 (-) True G76413
TU113040 lncRNA downstream 105010 10184094 ~ 10184522 (-) True G76388
TU112932 lncRNA downstream 183353 10098265 ~ 10106179 (-) True G76327
TU112929 lncRNA downstream 265831 10023495 ~ 10023701 (-) True G76324
TU113081 lncRNA upstream 14047 10317071 ~ 10317400 (-) True G76426
TU113138 lncRNA upstream 100933 10403957 ~ 10411838 (-) True G76458
TU113174 lncRNA upstream 121591 10424615 ~ 10445156 (-) True G76488
TU113180 lncRNA upstream 133168 10436192 ~ 10460399 (-) True G76489
TU113191 lncRNA upstream 152567 10455591 ~ 10456512 (-) True G76493
XM_043250135.1 mRNA downstream 5867 10267527 ~ 10283665 (-) False fgf13b
XM_043250851.1 mRNA downstream 98302 10184794 ~ 10191230 (-) True LOC122353016
XM_043249926.1 mRNA downstream 130639 10066471 ~ 10158893 (-) True dchs1b
XM_043249929.1 mRNA downstream 241078 10036639 ~ 10048454 (-) False arfip2b
XM_043250191.1 mRNA upstream 72478 10375502 ~ 10377728 (-) True znhit2
XM_043250195.1 mRNA upstream 74840 10377864 ~ 10379018 (-) True mrpl49
XM_043250197.1 mRNA upstream 77392 10380416 ~ 10381074 (-) True LOC122352676
XM_043250724.1 mRNA upstream 79652 10382676 ~ 10383332 (-) True LOC122352947
XM_043250725.1 mRNA upstream 80508 10383532 ~ 10384648 (-) True LOC122352948
TU113078 other downstream 11831 10267354 ~ 10277701 (-) True fgf13b
XR_006251964.1 other downstream 664127 9589980 ~ 9625405 (-) False LOC122353179
TU112582 other downstream 859732 9427962 ~ 9429800 (-) True G76068
TU112377 other downstream 1733444 8545367 ~ 8556088 (-) False G75913
TU112375 other downstream 1743380 8543097 ~ 8546152 (-) False G75913
TU113101 other upstream 77072 10380096 ~ 10383309 (-) True G76438
TU113102 other upstream 77072 10380096 ~ 10381047 (-) False G76438
TU113103 other upstream 77072 10380096 ~ 10383309 (-) False G76438
TU113196 other upstream 175035 10478059 ~ 10480189 (-) True G76498
XR_006251870.1 other upstream 673304 10976328 ~ 10983737 (-) False rps6kb1a

Expression Profile


XM_043250132.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_043250132.1 Expression in each Bioproject

Bar chart with 2 bars.
XM_043250132.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.