RNA id: XM_043250150.1


Basic Information

Item Value
RNA id XM_043250150.1
length 1171
RNA type mRNA
GC content 0.54
exon number 7
gene id paqr3b
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 898230 ~ 901850 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTCGCAGGATTTTAATGTCACACACTCGCGTCGTTAGCCTTTAGCCGCTCGGCTAATCGCCGGTCACCAACATCAATATGACGCTCACATTCTGTTATTAATCGGAAATTAAGAAACCAGTAGGGCTGGATGGGATAGACGGCGGGTCTTTACCTGGAGAGGGACACCGCCTTAGTGAGACACACATTGGCCTTGCTCCTCCAGCCACATGAACCAAGATGCCTCAGAACATCCTCAAGAGCACTCATTACATCGAGCTGGGCAGCTATCAGTACTGGCCCGTGCTCGTGCCCCGAGGAATCCGGCTGTACACCTACGAACAGATCCCAGTGTTCCTGAAGGAGAATCCCTACATCACGGATGGATACAGAGCGCACCTGCCGTCCAAACTGTGCCTCAAAAGCATATTCATCCTGTCCAACGAGAGCGTGAACATCTGGAGCCATCTGCTCGGGTTCCTGCTGTTCTTCTCGCTGGGAGTGAATGACATGGCCACGGTCCTGCCGTCCGCGGGGGCTTCTCGAGAGGACTACGTCATTTACTCGATCGGACTGTTTTGTTTCCAGGTCTGCATGCTGTGCTCCGTGGGCTATCACTTGTTTTGTTGTCATCGCTCGGAGAAGACGTGCCGCCGCTGGCTTGCTCTGGACTATGCTGGAATATCTGTGGGCATTTTGGGATGCTATGTGCCTGGAGTCTTCTATGCCTTCTACTGCAACAGTATGCGTGTGGTGCCGCTTTCAGTTCTGGAGGCAGGTGTACCTGCTGACGGTGCTGGCTCTCATCCTGGCCGTGTTCGCGGCTCAGATTCATCCGCTCTACCTCACGCAGCAGTGGAAGAAGCTGCGCTCGGCCATGTTCTGCTCGGTGGCCGGGTACGGCATCATCCCGGCCTGCCACTGGGTCTGGCTCAACGGAGGATTCCACTCCGAAATCGTGAAGGTGTTTTTTCCTCGAGTCATGGTCATGTATCTGATTGCCGCCTCGGCGTTCCTGTTCTACGTCAGTAAGATCCCAGAAAGATACTTTCCAGGCCAGCTGAACTATCTCGGAGCCAGTCATCAGCTCTGGCATGTTCTGGTGGTGGTCATGTTCTACTGGTGGCATCAAACCGCCATCTACATCATGAAGTACAGACACAACCAGCCCTGCACGGACTACAGCAGTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109101 lncRNA upstream 13743 884253 ~ 884487 (+) True G73731
TU109097 lncRNA upstream 42346 855214 ~ 855884 (+) True G73727
TU109069 lncRNA upstream 90384 807618 ~ 807846 (+) True G73711
TU109068 lncRNA upstream 92565 805370 ~ 805665 (+) True G73710
TU109005 lncRNA upstream 101291 796491 ~ 796939 (+) False fstb
TU109116 lncRNA downstream 5137 906316 ~ 907653 (+) True G73739
TU109107 lncRNA downstream 16617 917796 ~ 919493 (+) True G73732
TU109104 lncRNA downstream 17554 918733 ~ 919493 (+) False G73732
TU109106 lncRNA downstream 17554 918733 ~ 919493 (+) False G73732
TU109162 lncRNA downstream 179866 1081045 ~ 1082023 (+) False LOC122352734
XM_043250146.1 mRNA upstream 342 888702 ~ 897888 (+) False antxr2b
XM_043250145.1 mRNA upstream 342 888703 ~ 897888 (+) True antxr2b
XM_043250143.1 mRNA upstream 342 888704 ~ 897888 (+) False antxr2b
XM_043250147.1 mRNA upstream 14750 874701 ~ 883480 (+) True rasgef1bb
XM_043250785.1 mRNA upstream 50339 844155 ~ 847891 (+) True snx18b
XM_043250268.1 mRNA downstream 32897 934076 ~ 945860 (+) False rbm18
XM_043250269.1 mRNA downstream 32899 934078 ~ 945860 (+) False rbm18
XM_043250265.1 mRNA downstream 44824 946003 ~ 958730 (+) True lhx6a
XM_043250266.1 mRNA downstream 44824 946003 ~ 958730 (+) False lhx6a
XM_043250262.1 mRNA downstream 44824 946003 ~ 958730 (+) False lhx6a
TU108992 other upstream 202307 693200 ~ 695923 (+) True isl1b
TU108810 other upstream 499374 398268 ~ 398856 (+) False c10h5orf63
TU109131 other downstream 32890 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1210017 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1292918 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1687966 2589145 ~ 2705339 (+) False cntfr
TU110065 other downstream 1876680 2777859 ~ 2780475 (+) True il11ra

Expression Profile