RNA id: XM_043250209.1


Basic Information

Item Value
RNA id XM_043250209.1
length 3724
RNA type mRNA
GC content 0.49
exon number 19
gene id vldlr
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2086121 ~ 2105289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGCGCGCGAAGGGCAGGTTCGTCGGATGAAGTGGTACAGAAAGGGTTAACGGCGTGTAAATGACATGTTGAAGGAGAAAAAAACGCGCCTGCGTTCGGCGGTGCTTATTCGCTGCAGGTTCACGCTATCAGTAAATTAGGAAATGGATTGCGGTTCCGCGAGCGCTTCGCGTGCGTGGAGAGACTAACCGGGGAGCTGcctgaatgaaataaaagcccGCGGTACACGCTGCTTTCTGTTTGTCCCGCGAAGACGTGTCTGCCCGCTGCGCTACAATATCAGGGACGAGGCCACAGACGGACACGGCGTTCAGCTCCCCGACGCGAAATGGTCACGTCTATTCTGTGGCTCCTCATTCTGCCGGtgtgtcttcagctgtgtggaTTTTCGCGCGCTTCCCGAACAGAATGTGAGCAGTCCCAGTTCCAGTGTGGGAACGGCCGGTGCATCCCGTCTGTGTGGCAGTGCGACGGAGACCTGGACTGCTCGGACGGGAGCGACGAGACGTCCTGCGTGAGGAAGACCTGCGCCGAGGTGGACTACGTCTGCCGCAGTGGACAGTGTATTCCCAAGAGATGGCAGTGCGACGGAGAACCAGACTGCGAGGACGGCTCAGACGAGAGCATCGAAATGTGCCACACGAGGACCTGCCGAGTGAACGAGTTCAGCTGTGGCGTCGGCTCCACACAGTGCATTCCCGTCTTCTGGAAGTGTGACGGTGAGAAGGACTGCGACAACGGAGAGGACGAGATTAACTGTGGTAACATTACATGCGCTCCTCTGGAGTTCACCTGTGCCAGCGGCCGCTGCGTTTCTCGTAATTTCGTCTGTAACGGCGAGGACGACTGCGGGGACGGCAGCGACGAACAGGACTGCGCTCCTGCTTCCTGCGGCCCGAGTGAAGTCCCTTGTGGAAATAATACCTGCATTCCTAGAAGCTGGCTGTGCGATGACGATGTGGACTGCCAGGACCAATCGGACGAGTCGCCAGAGCGCTGCGGGCGCAACCCCACCCCGCCAGCGAAGTGCTCTCCCAGCGAGATGCAGTGCAGTTCTGGGGAATGCATACACAGGAAGTGGCGCTGTGACGGGGATCCAGACTGCAAGGACGGCAGCGACGAGAAAAACTGCTCTGCCCGTACCTGCAGGCCCGACCAGTTCAAGTGTGATGACGGCAGCTGTATCCATGGCAGCCGACGGTGCAATAGCTTCCGAGATTGTGCAGACGGCACAGATGAAGTCAACTGCAAAAACTTAACTCAGTGTAACGGCCCTGACCAGTTCAAGTGCCGGAGTGGAGAGTGTATTGAGATGAGTAAGGTGTGTAATAAAGCCCGTGACTGTCCTGACTGGAGTGATGAACCCATCAAAGAGTGCAATATGAATGAATGCCTGCTCAATAACGGAGGCTGCTCGCACATCTGCCGCGACCTAACGATTGGCTACGAGTGCGACTGCACGCCAGGACTCCAGCTCATCGATCGCAAGACCTGCGGTGATGTCAATGAGTGCCTCAACCCTGGTATATGCAGTCAAATATGTATAAATCTTAAAGGAGGATACAAATGTGAGTGTCACAATGGCTACCAGATGGACCCCACGACTGGAGTTTGCAAGGCTGTAGGTAAAGAGCCCTGTCTTATTTTCACCAATCGAAGAGACATCCGTAAACTAGGACTGGAGCGGAGAGAATATACTCAGATTGTGGAGCAGCTGCGGAACACAGTAGCTGTAGATGCTGACTTCGTTCAGCAAACAATATTCTGGGCTGACCTGGGCCAGAAGGCAATTTTTAGcACAGTGTTAGATAAGCAAGAGGCAAGCCATATGAAAGTGATTGACAACGTTCAGATGCCTGTTGGGATTGCAGTGGACTGGATTTACAAAAACATCTACTGGTCAGACCTAGGCAGTAAGAATATAGCAGTGGCCAATTTTAATGGGACTAGGAGGAAGGTACTGTTTAACAGCGGCCTGAAGGAACCAGCCTCTATTGCTGTAGATCCTCTATCAggGTTCCTGTATTGGTCGGACTGGGGTGAGCCTGCTAAGATTGAGAAGTCTGGTATGAATGGGATTGACAGACAGGTCCTAGTAGAGACAGACATTCAGTGGCCCAATGGAATCACTCTCGATCTGATCAAGGGCCGACTCTACTGGGTGGATTCAAAGCTGCACATGCTTTGTAGTGTAGACTTGAATGGAGACAACCGCCGGAAGGTGCTGCAGTCACCAGACTACCTTGCCCACCCTTTCGCCCTTACTGTTTTTGAGGATCGAGTGTTCTGGACAGATGGTGAGAATAAGGCAATCTACGGTGCAAACAAGTTCACAGGATCTGATGTAACTCTGCTTGCCAGCAACCTCAATGAAGCCCAAGACATCATTGTGTACCATGAGCTAATTCAGCTGTCTGGGACCAACTGGTGTAACGAGAAGGTGGAGAATGGAGGCTGTTCCTTCATGTGTCTGCCAGCTCCACAAGTTAACAAACATTCCCCTAAATTCACCTGCGTGTGTCCTCAAGGTCAAACACTCGCCTCAGATGGCCTGCGCTGCAGACCAGcttcCGCAATACCGAAGGTTTCCTCTGAACCAGTTCGGGCTGaaggAAACATAAGCACGTCCATACATGAAGTAAATTCATCAGCTAAAGGATCTGCTGCAGCCTGGGCTATTCTACCTGTGTTGCTATTAGCCATGGCTGCAGCCGGTGGTTACTTAATGTGGCGCAACTGGCAGATCAAAAATAAGAAGAGCATGAACTTCGATAATCCAGTATATTTGAAGACCACAGAGGAAGACCTCAATATCGATATCAGCAGACACAGCGCTTCTGTAGGCCACACGTACCCTGCTATTTCGATGGTAAACACAGAAGATGACTTGTCATAACCCAAGCCCCCACAATGCTCCAGTTTATATACTAGCCACTTGGCACCAATGGCAACTGCTGCGGTTTCACAACCAGCTGCCTTCTGAAGTGCAtttccaagtttttttttttttttttttttttctcctctgtctctccaaTAAGAGGATGTCATTTGTGGTACGAGAACGTATTTGCACCCTACTTGCGCTGTGTGTGCTCAAAGCATCAAGGAAATCTGATGGCCTGGGGTTTTTTTACCTTCACATACACCATAATAGCCCCAAAATGATTCAACAGCCTTAATTCCTATTTACAAGGATGACGGCATAGCTGGACCCAGAATGCAGCTTAGATGGCCAGTAGTGTGTGTGGACacctgaaatatttaaatgaaaatgcatattttagatGACCATGTCTTTAAAGTGtaagtttcttttgttttcctaATGGACCCTGTTTCCCAGAGATGCATTAATTACGAAGCTTCGTGTGTCTTTCTGGATTTGAAAAGGCTCTATTGGGAAACGTGCTGTTACGACATTTGTAAAACATTGTATATATCCCTCTCTGGAAAACATAATCAGGATTCCTCAAGCACTTTGATCAAATGTTCCTCTGTAAATAAGATTGTATACATTTGACTGAGACAATTTTGTTATGGTTGGGCACTGTACCAGGGTAgaggaaaatgtatttaaaaaatgaagtttgttaaaactattttgtatgtttgtgtgctgttCCTGTGACCTTTTTATAGCAGTGTGCAGGGGAACAAAATGCTCTGTATTGTGAAAGGAAACATTTGCaaacgtaaaataaaattaaagtttaaaattaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251946.1 lncRNA downstream 209369 1869993 ~ 1876752 (-) True LOC122353011
TU109725 lncRNA downstream 217175 1867972 ~ 1868946 (-) True G74149
TU109710 lncRNA downstream 239257 1844996 ~ 1846864 (-) False adamts6
TU109674 lncRNA downstream 380444 1705098 ~ 1705677 (-) True G74109
TU109675 lncRNA downstream 383003 1702757 ~ 1703118 (-) True G74110
XR_006251910.1 lncRNA upstream 56857 2162144 ~ 2162704 (-) True LOC122352694
XR_006251909.1 lncRNA upstream 61104 2166391 ~ 2167347 (-) True LOC122352693
TU109961 lncRNA upstream 64032 2169319 ~ 2170148 (-) False LOC122352691
TU109962 lncRNA upstream 64032 2169319 ~ 2170549 (-) True LOC122352691
TU109963 lncRNA upstream 64032 2169319 ~ 2170148 (-) False LOC122352691
XM_043251121.1 mRNA downstream 1931 2081915 ~ 2084190 (-) True kcnv2a
XM_043250532.1 mRNA downstream 13206 2063385 ~ 2072915 (-) False trappc13
XM_043250533.1 mRNA downstream 13206 2063385 ~ 2072915 (-) False trappc13
XM_043250531.1 mRNA downstream 13206 2063385 ~ 2072915 (-) True trappc13
XM_043250252.1 mRNA downstream 30085 2044162 ~ 2056036 (-) False nln
XM_043250214.1 mRNA upstream 1823 2107110 ~ 2124732 (-) False sh3bp2
XM_043250212.1 mRNA upstream 1823 2107110 ~ 2122873 (-) False sh3bp2
XM_043250211.1 mRNA upstream 1823 2107110 ~ 2122873 (-) True sh3bp2
XM_043250213.1 mRNA upstream 1823 2107110 ~ 2118092 (-) False sh3bp2
XM_043250219.1 mRNA upstream 76508 2181795 ~ 2186043 (-) False parm1
TU109557 other downstream 598113 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 598206 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 598206 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 612243 1466751 ~ 1473878 (-) False G74031
TU109952 other upstream 88828 2194115 ~ 2197311 (-) False LOC122352692
TU110254 other upstream 1232101 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1496325 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1800327 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1800327 3905614 ~ 3912742 (-) False LOC122352741

Expression Profile