RNA id: XM_043250252.1


Basic Information

Item Value
RNA id XM_043250252.1
length 2682
RNA type mRNA
GC content 0.50
exon number 13
gene id nln
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2044162 ~ 2056057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCTTTACGCTCGAGTGTGACGGTAGGACCTGCATCCACATTTTGCACGTTGCACGTATGAAACTAAAGGCATGAGATGTTTATCCTCGGCATTTCCGTGACACTTCTTAGAAGcttttcttttctaaagTTACCAGAGGCAAGCGCCCACGCAATGCACGGTGGTCAGTCACCGGCTCTTTCTTTAAGACACAGCAGAGTCATTGCATCCAAGCTCGAGATGACGCTTCAGAACGGACCGGTCGTGTCCGCCCACAGCTGCTCGAGCACGGCCCACAAGAACAACAAGCTGAGCTGGGACCTGACCCCAGAAGAGATCAGACATCAGACGCAGAGACTGATCCAGAGGATAAAACGAGCCTATGACGCTGTGGGCTCGGTGGACGTGGGGAAGGTGTGCTTGGAGAATACACTGCAAGTCATTGCAGATGCAAAGGCAGATTATGCCGCTTCACGCCACGTGTTGGACTTCCCTCAGTATGTCTCTCCGTGTAAAGAGGTGAGGTTGGCGAGCACCGAGGCTGACAAACGCCTGTCGGACTTCGATGTGGAAGTGAGCATGAGGCCGGACGTGTTTCTGAGACTCATAGCCCTGCAGGAAAAACAATCCGGCAATTTATCGCCTGAGGCGGAGAGATTCCTGGGACGACTCATAAAGTTAGGGAAACGGAACGGATTGCACTTGTCCAAGGATATACAAGAAGAAATCAAGTCGATCTCGAAGCAAATAAGTGAACTCTCCATTGATTTCAACCAAAATCTGAATGAAGAAAACACGGTGCTGTTTTTCTCACATCAAGAGCTTGTGGGTCTTGCAGAAAGCTACGTGAACGGTCTCGAGAAAACAGAAGATGGGCGGTACAAAGTCACCCTTGCTTATCCGCACTACTTCCCCCTGATGAAAAGATGTCACGTTCCCGAAACCAGGAGGAAGATGGAGATGGCCTTTCACAGCAGGTGCAAAGATGTGAACACTTCTATCCTGGAACAGCTGATTGAGTTGCGGGCAAGGCTCGCCAAACTCCTGGGCTTCAGCAGTCATGCCAATTATGTCCTGGAAATGACCATGGCCAAAAACTCAGAGAATGTGGCACAGTTTCTAGATGAGTTGTATAAGAGGTTGAGACCAGTGGGCGAACAGGAGCGGCAGTACCTGCTGTCACTCAAACGTGCTGACTGCGAGAGGCGGGGCTTGGGGTTTGATGGACAGCTCCACGCGTGGGACATGCCCTACTACATGAACCAGGTGGAACAAGTGAAGTTTGCGGTGGATAAGGACAAACTGATCGAGTACTTCCCTCTGGAGGTGGTGACCGAGGGCCTGCTAAACATCTATCAGGATCTCTTGGGTCTGAGTTTCCAGCAGGTGGAGGACGCTCACGTGTGGCACGACAGCGTCAAACTCTACTCTGTACAGGACTCTGTGACCGGAGAGGAGATCGGACAGTTTTACTTGGACTTGCATCCCAGGGAGGGTAAGTATGGTCATGCTGCATGCTTTGGGCTCCAGCCAGGATGTCTTGGGCCTGATGGGAAACGTAGAATGTCTGTAGCTGCCATGGTGGCCAACTTCACGAAACCCACAAGCGGCTGGCCCTCGCTCCTGCAGCACCATGAGGTGGAGACCTTCTTCCACGAGTTCGGACATGTCATGCATGAGCTCTGCTCCCGGGCCTGCTACGCAGAGTTCAGTGGGACGCAGGTGGAGACTGATTTTGTGGAGGTGCCATCACAGATGCTGGAGAACTGGGTTTGGGAGAAGGAGCCGCTGAGGAGGATGTCCCGCCACTACAAAGATGGCAGCCCGATCCCAGACGGTCTGCTGGAGAAACTCATTGCATCTAGAGTGGCCAATACAGGTCTGATGAACCTCAGGCAGATTGTTCTCAGTAAAGCTGACCAGACGCTCCACGCTAAAGACAGAGCGGATACCGCGGCCGAGTTCGCCAAGCACAGCCAAGACATCCTGGGAATCCCAGCCACACCAGGCACGAATATGACGGCTAGTTTCAGTCATTTAACCGGGGGATATGACGGGCAGTACTACAGCTACCTCTGGAGCGAGGTCTACTCCATGGACATCTTCTTCAGTCGCTTCAAAAAGGAAGGAATCTTGAATCCAAAGGTGGGCAGGGAGTACAGGAGAGTGGTCCTGGAAGCCGGAGGTTCGGTGGACGGCATGGAGATGCTGAAGACCTTCCTGGGTCGAGAACCCCGCCAGGACGCGTTTTTTCAGTGTAAAGGACTCACGCAAACTATTACAGAGCAAAAGTCACATTGATTGTGAGCTACAGGAAGTGAAGAACTCATTAATAATTGAACTGTGCACTGATAAAATACAGTACCAGTTATATACAAGGAAAATGCCTGTGTGATGTGCAGGAGTCTGTACGTCCggaatgaatgtttttgaaggGATTCAGAATGCAAGCGTGTAAATAAGTATGCAGATTCATTAATATGGCACTGCACGCGTGCTATTGCACACTAGACTGAAAAATTCTCGTTTTGTGCAATATGCAACAGCCATTATATACAAAAAGATCTCGTCCTGAAAAGTCACAGGCAGTATAAAATGAACACTAGGAGGAGACAAACATCACCTTTTCGCTTTATTATTCAATTGTAGCTGTCGTTATTGATCGATTATCTGTTAAATAAAACTGCTTTCAGACATGAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251946.1 lncRNA downstream 167410 1869993 ~ 1876752 (-) True LOC122353011
TU109725 lncRNA downstream 175216 1867972 ~ 1868946 (-) True G74149
TU109710 lncRNA downstream 197298 1844996 ~ 1846864 (-) False adamts6
TU109674 lncRNA downstream 338485 1705098 ~ 1705677 (-) True G74109
TU109675 lncRNA downstream 341044 1702757 ~ 1703118 (-) True G74110
XR_006251910.1 lncRNA upstream 106108 2162144 ~ 2162704 (-) True LOC122352694
XR_006251909.1 lncRNA upstream 110355 2166391 ~ 2167347 (-) True LOC122352693
TU109961 lncRNA upstream 113283 2169319 ~ 2170148 (-) False LOC122352691
TU109962 lncRNA upstream 113283 2169319 ~ 2170549 (-) True LOC122352691
TU109963 lncRNA upstream 113283 2169319 ~ 2170148 (-) False LOC122352691
XM_043250250.1 mRNA downstream 727 1988709 ~ 2043435 (-) False erbin
XM_043250247.1 mRNA downstream 728 1978261 ~ 2043434 (-) True erbin
XM_043250249.1 mRNA downstream 729 1978261 ~ 2043433 (-) False erbin
XM_043250261.1 mRNA downstream 67779 1969482 ~ 1976383 (-) False zfand5b
XM_043250532.1 mRNA upstream 7349 2063385 ~ 2072915 (-) False trappc13
XM_043250533.1 mRNA upstream 7349 2063385 ~ 2072915 (-) False trappc13
XM_043250531.1 mRNA upstream 7349 2063385 ~ 2072915 (-) True trappc13
XM_043251121.1 mRNA upstream 25879 2081915 ~ 2084190 (-) True kcnv2a
XM_043250207.1 mRNA upstream 30085 2086121 ~ 2105289 (-) True vldlr
TU109557 other downstream 556154 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 556247 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 556247 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 570284 1466751 ~ 1473878 (-) False G74031
TU109952 other upstream 138079 2194115 ~ 2197311 (-) False LOC122352692
TU110254 other upstream 1281352 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1545576 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1849578 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1849578 3905614 ~ 3912742 (-) False LOC122352741

Expression Profile