RNA id: XM_043250260.1


Basic Information

Item Value
RNA id XM_043250260.1
length 2085
RNA type mRNA
GC content 0.46
exon number 5
gene id zfand5b
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 1969482 ~ 1976383 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGACGTCACGGCCACTATTAAAGAAAACCAACAAACAGCGGCCagaaaaacacatatacacacacgccaGCGGACTAACAGCACGGCCCGTCGCCAAGGGTTTCATACAAAGTCTCTATATCGTGGGAGCTTCTCTTTTTACTCGGATAAGGAATCGCTCGTTTACGGAGAGATGGCCCAGGAGACCAATCAAAGCCCCGTGCCCATGCTCTGTGCCACCGGCTGCGGTTTCTACGGCAACCCTCGGACCAATGGCATGTGCTCGGTCTGTTACAAAGAGCATTTAACGCGGCAGAACAGCGGGGGAGTCAGTCCGATTAGCACAATGGCAGCTTCCAGCAGCGTCACCAGCAGTCCTACCTCCGAATCCTCAGCCATCCAGATCATCGAAGCTACGCTAAACAACTCCTCGTCTGCTAGCGCTAGTGCTGAATCACCCACCGCGACCGCTGCCCTCCCCGTTACACAACAGATGACGGAGATGAGCATTTCCTGCGAAGACGAGGTGGTCTCGCCTAAAGTAGAACTTCCTGAACCAGttgTCACTCAGCCGACAGCGTCCGCCGCTCCTCCGAGCACAGCTGAAGGTGACGAGACCAAAACACCTGACTTACCCAAACCCAAGAAGAACAGATGCTTCATGTGCCGCAAGAAGGTGGGCCTGACAGGGTTCGACTGTCGCTGTGGGAATCTCTTCTGTGGACTCCACCGCTACTCGGACAAGCACAACTGCCCCTACGACTACAAGGCCGAGGCTGCGGCCAAGATCCGCAAAGAGAACCCGGTGGTGGTGGCCGACAAGATCCAGAGAATATAAAGCTCTCGCCGTCCGCACCGCCACTTTGCGAGagatcagatccgaggactcgCACATTGACCTGTGACCCGAGagactagtttttttttaattacagtatggaaaagaaaatcatgtttctaagCCAGTGCATGAGTGATTACTTTGTTTCCatctttcttttgctttctgtTGTCGGTATGTGAGCTTCAAGTTAAAACAAATGGGggggaatttaaaaaaaaaaggtaaaaaaaaaaagaatgcctGTAAAAGAAGCCAGAGACATCTGCCTACCGTGTCTGTTTCTGAGTGGAACCCGTGCTGTAATCTGGAGTCTGGTTGTCATTAGTTTCCTCTGTGATGTGTCTCCCGGTCGGACTCTGAAGAGCGCCGTCAGAGCAGCGGTGCATGGCTGGCTCATGTAGCAAAAGGACGTTCTGTTTCCTCGGGGTGGAGTCGGCCGTTACCACATCTATCAGCCGTCTTTCTGTCGGAGGGATGCTGGGGCTTCCCCGTCATTCAGCTGtcttcaaaatgatttttaaaccATTGACAGACTTTGTGAAAAATGTTATCCGATTTGGGATGGTTTAATCCAGCAGCCAGACCGGAATGCTTTCATGATCAATTTTGAGCGACTGCATCCATGATACCCTGTCAAGTTCAGATGAGGTTGGACGTGGCAACAACATAAAACCGTTTATTCATTCTCCCACATGATCCATTTAAGtgaattgaatattttttttttattttggttggtTTGTAATGTGACGCCGGTTTGATTTCTGGGCTTGTTCTGAGGGCTTGTTGGGTTTAAAGTGGGTGTTTTGCATGGTTAGTGAAATGAGTATTTTACAGTTGATTGCATATTAGAAgtccatttctttttctttttttttcctgtctttctGCTAATTCACTTTTCTCGTGTGAGTGATCTTTTCAGTGGGTATTGAGTGTTAAATGCTGGTAAGAATAATGGTATTGTTTCGTGTCATTAATCAGTCTTTACGCCTGCTTGAGTGTTGTATGTCAGTCCACATCTTTTTCATCCGAGgctcagtttgttttttttaggtctGGCTGCACAgcgctgttttattttagagctTTGTGAGTTTACAGTAAAACTAACCATCTGTTCGGAATTGATTTTTAGTTATGCAAGTTTGTACAAaccatctttatttattatatgtattgcGCATATAATCTTGTTACCCAACATTACTGCAAAATTGtatcatgtaaataaaattatgtacaGAGATATCATTAAAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251946.1 lncRNA downstream 92730 1869993 ~ 1876752 (-) True LOC122353011
TU109725 lncRNA downstream 100536 1867972 ~ 1868946 (-) True G74149
TU109710 lncRNA downstream 122618 1844996 ~ 1846864 (-) False adamts6
TU109674 lncRNA downstream 263805 1705098 ~ 1705677 (-) True G74109
TU109675 lncRNA downstream 266364 1702757 ~ 1703118 (-) True G74110
XR_006251910.1 lncRNA upstream 185761 2162144 ~ 2162704 (-) True LOC122352694
XR_006251909.1 lncRNA upstream 190008 2166391 ~ 2167347 (-) True LOC122352693
TU109961 lncRNA upstream 192936 2169319 ~ 2170148 (-) False LOC122352691
TU109962 lncRNA upstream 192936 2169319 ~ 2170549 (-) True LOC122352691
TU109963 lncRNA upstream 192936 2169319 ~ 2170148 (-) False LOC122352691
XM_043250285.1 mRNA downstream 29485 1928874 ~ 1939997 (-) True apba1b
XM_043250286.1 mRNA downstream 29492 1928874 ~ 1939990 (-) False apba1b
XM_043250236.1 mRNA downstream 107427 1854090 ~ 1862055 (-) True trim23
XM_043250237.1 mRNA downstream 108837 1854090 ~ 1860645 (-) False trim23
XM_043250234.1 mRNA downstream 122580 1774223 ~ 1846902 (-) True adamts6
XM_043250247.1 mRNA upstream 1878 1978261 ~ 2043434 (-) True erbin
XM_043250249.1 mRNA upstream 1878 1978261 ~ 2043433 (-) False erbin
XM_043250250.1 mRNA upstream 12326 1988709 ~ 2043435 (-) False erbin
XM_043250255.1 mRNA upstream 67779 2044162 ~ 2056057 (-) False nln
XM_043250259.1 mRNA upstream 67779 2044162 ~ 2056051 (-) False nln
TU109557 other downstream 481474 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 481567 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 481567 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 495604 1466751 ~ 1473878 (-) False G74031
TU109952 other upstream 217732 2194115 ~ 2197311 (-) False LOC122352692
TU110254 other upstream 1361005 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1625229 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1929231 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1929231 3905614 ~ 3912742 (-) False LOC122352741

Expression Profile