RNA id: XM_043250262.1


Basic Information

Item Value
RNA id XM_043250262.1
length 4065
RNA type mRNA
GC content 0.46
exon number 8
gene id lhx6a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 946003 ~ 958730 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttcaatatcAGCCGGACCCTAAAATAATCTTCTTTATTAAAACTCTTTCGAATGCACGCGTGTTTAGAGAAGCCGAGCCCTTTCCttgttattttcttcatttgcaATTTACCGACTTCGTTTATTTTTTCgacactactttttttttttttttgtgatataaaaATAGGCCTAATCAGttatacttcaaaataaaggtttgcaACGAagaatttttcttttgcacGAAATGTTCTcgacggtaaaaaaaaaatgtttttaacgttgggaaaaaaaatattgttctttGGAAAATCGAAAGGTTTTTTTCCACCTAcggaaaaacaaaaatcaaacgAAACGTGAATAAAACTTTTGAAACGGTTAAAGGTAAAATAATCGGTGTTTATGATCAATTCTGTAAAGTCGCGTCGCATTATTCCTCTTTTGTTCGCATTCATTTCCAAACCCCGAGCGATTTTTATAACTGCTGCTCCCATTGAACCCGAGCTCTTTCTAATCTCTCACATGCACATGCAACCCTTCATTCTAAcgatatacatgaatatatccAGGCGTAATGTAACTGTTGCATAAGAGAAAAGGTCCTCTCCGCACCTCTACCTGGATATTATCTGatggaaatgtgtttttccGCTGCTTCTCCGCGACATAATAACAGCGCGATGCTTTCGGGCTCGAGGGATATGTTTTTATCTCGCATGCCCATTTTAAACCAATTCAAGAAACGGATAGCATTGTGAACGGATGCAGTCGTCTCGCGTAAAAATGTCATGCACCTCCACCAATTATACAGCACGCGGTCTGGTGTTTAAATATACCTACACGAGCGATATATTAGTGCGACGCCACAGAACACGACGCACGCCCCAAGTGAACCAACGAATCGTGATTTTGGGGGCATTTCGTTGCATCACGCGCAAACGGATTCGGTAAGAAACGTCTTTTTTTGTCGTTTGCGAAAACTTCATTAAATACTAACGAATTCGAGCGACACACGGTGTATCAGTGTATCAAATCAAATGCGGTTGATTTCGTCCTAGAGCTTATTTTATGCGAtttcataaaatgcatgaatcaaaaaaatattttcaattgtataatagcctatatatatagtttgaaGTCTCGGCACGCAAACAAGTGATAAACATCGACCCAGCCGTCGAATATGGTTTTTAATATCGCTCATTTGTGCGTCAATTAATCCCCGAACATCACGCAAGCTTCGAGCATCACAAAATGTCGATGCACACTCAGGCCACATCTCTTCCCTCCCCTCTGATCTGTAAACTTTCAGAAGGTAGGCTGTGCTCTGACTGCCTATGAGGAGAGCAGGAGCAAAACCTGCCAGCCCCTCAATTTTCTCCACTTCCTGTACTCAAGCAACCGCGTCCCAAAAGAGGGAAAAAGTAGGAAATATCCCGCAAACGGCTCTAAATAAGGCGCCCGGACGAACCGCTCGCGCTCGGCGCGTCAGCTGCCGCGTTCAGAACGATCACGAACGAAACGTTAGCCTCCCGGAGGACACGGCGAGCCTCCGTCGCGCTAAACCGATTTCGAGCGCATGGGATAACGAATCTTTAACgcgaaagaaaaaagcaaaaaagctcGAAGATATCGAAAGGCCAGCTTAAGCCGTCAAATGTATTGGAAAAATGAGGCTTTGGCCCCTCTGTCAGAGGGAAACCAGTTTCTATCCGAAGGAATTCCCTCAAAACAGTCGCAGTCTGACGGGGAATCTCACAGGTCGAACATGGAGAAAGAGGAGCCTCGCTCTTCGCCCAGCCCGCCCTCGACGCCGTCCATCTGCTCGCCCACCTCCAGCGCCTCGTCCGTGCCGTCCACCGGGAAGAACGTGTGCGCGAGCTGCGGCCTCGAGATCCTGGACAGATATCTGCTGAAGGTGAATAATCTGATCTGGCACGTGAGGTGTCTGGAGTGCTCCGTCTGCAGGACGTCCCTGCGTCAGCACAGCAGCTGCTACATCAAAAATAAGGAAATCTTCTGTAAAATGGATTATTTCAGTAGGTTTGGTACAAAGTGTGCCCGCTGCGGCCGGCAGATCTACGCCAGCGACTGGGTCCGGCGAGCCCGAGGAAACGCTTATCATCTGGCCTGCTTCGCCTGCTTCTCCTGCAAACGGCAGCTGTCCACGGGCGAGGAGTTCGGGCTGGTGGAGGAGAAGGTGCTCTGCCGGATCCACTACGACACAATGGTGGAGAACCTGAAGCGGGCCGCTGAGAGCGGAAGCGGACTCACTCTGGAGGGGGCTGTGCCGTCGGAACAGGACAGTCAACCCAAACCGGCCAAAAGAGCGCGGACGTCCTTCACCGCAGAACAGCTGCAGGTAATGCAGGCGCAGTTTGCGCAGGACAACAACCCCGACGCGCAGACGCTGCAGAAGCTGGCGGACATGACGGGACTGAGCAGACGAGTCATACAGGTTTGGTTTCAGAACTGCCGAGCGAGGCATAAAAAGCACACTCCCCAGCACAGCGGGCCGCCTCAAGCTCACCCGCAGGCCCGCATGCCCCCCTCGCTGCCCGACGAGCTGCATTACTCGCCCTTCGGCAGTCCTGAGAGAGCGCGCATGGTGGCCCTGCACGGATACATCGAAAgCTTGGCAGGTCATCCGTTCTCGGTGCTCACCACACAGAGCCTCCCTCATCAGGCCATGACGCTGCCGCAGCTCCCTCTCAGCCGCTAACGACCCCTGACCCCTGACCTCCCGCTCCAGAGGTCACGCTCCCTCTTGCTCTTGACCTCTGAACTcgcaaaaagagagagagagagagactgtttCCTCTCTGCTTTCATCGGACAGGATTTTACTCGCCTGCGTCTAGTCCCTCTCGGTTCAGGAGAGCCGCGTCTGTGACCTGTGAATTTAGGACTTTGTCACCAAGACCAGGATCTGGACTTCCGGACAAAGAGAAAAGACTCGAGCACACACTGTAAAAGACTAGCGCTCTCGGTGCGTCTCATCTGACTCTCGTGCAGCGTTTGGAGGCTCTGAATGCAAACAAAAGGAATGTAAAGTTACCAGCGTCAgtgttaaaacatttagattgaAAAAGGCAAAAGCACAAGAGATGCGGATGGGAAATAGATGGCATAGAAGCAGGTGGTAAGAccaatttttctctttttccttgcCGAAAGATGCCACGGTTGAAATCTGTACTGAGCCAGAGAAAGCAACGTATGCCACAGTTCAGTCCACTAGTCCTTGCTTTCTTGTTCTAACAGCCGTATGCAAAGCATACCTTGAGCCTACAAAGCCAGCGGTCCACagatttcactttaaaaacaattgtacGCAAAGGACTTAAAAGTCCgttatttcattgtaaaaaataacagccattttttttgtccacatTCCGTTTGGAAAGCAGATAGTTTTAGAAAAGTGAACTTGTTTCCTTTTAGATTGAGGTGAAACGTTAAACGGTCATTTCTTTAGTCCAAAAAGATGTCCTCGATATCTTCcctaattttattattattattattcaggaTGAATTTCGATAACTGTTGTCATTGCAGTTTAACTGCAGTCGCAGGCTATAATTGACGTCGATCTTAGTGTGAGATTATTTCAAATCGAATACAGTGCTCTGAAcgttttctaaaacaaaaacactaaaggATGAAGACGGGGTTATCAGTGACACGCGGCCGTGTTTTGTGCGTGAGACAGAAAGGAGGAGACAAAGCTGAGACTAAAAAGAGCACTTGAGTAAAATGTAAAGATAGCTACatgtaaagaaaatgtacatgtaatgtatttttatttaagcggTGTCCTGACTTTATGTGGGAGACGAATGTGTCTGTGTTTCATGGTTTTCTTCATACTAACAGATAGAGCTGTGCACGGGGGGAAAGTCTGAAATTGTAACTTAAATTTGAGACATGCATCTTGTGTTCAGAATGGGGGACGAGGCCTCGACGTTCTTGTATTTATTATGACAGGTAGCCTGTAAGCACTTTTCCCCACTTCCACATgtctgttttgtaaaaaaaaaaataaataaaaatgaaataattaactaTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109107 lncRNA upstream 26510 917796 ~ 919493 (+) True G73732
TU109104 lncRNA upstream 26510 918733 ~ 919493 (+) False G73732
TU109106 lncRNA upstream 26510 918733 ~ 919493 (+) False G73732
TU109116 lncRNA upstream 38350 906316 ~ 907653 (+) True G73739
TU109101 lncRNA upstream 61516 884253 ~ 884487 (+) True G73731
TU109162 lncRNA downstream 122315 1081045 ~ 1082023 (+) False LOC122352734
TU109164 lncRNA downstream 157403 1116133 ~ 1116389 (+) True G73763
TU109157 lncRNA downstream 158383 1117113 ~ 1122250 (+) False G73760
TU109160 lncRNA downstream 158383 1117113 ~ 1126466 (+) True G73760
TU109167 lncRNA downstream 181619 1140349 ~ 1140659 (+) True G73766
XM_043250268.1 mRNA upstream 143 934076 ~ 945860 (+) False rbm18
XM_043250269.1 mRNA upstream 143 934078 ~ 945860 (+) False rbm18
XM_043250148.1 mRNA upstream 44153 898230 ~ 901850 (+) True paqr3b
XM_043251194.1 mRNA downstream 10977 969707 ~ 971815 (+) True ndufa8
XM_043251182.1 mRNA downstream 42345 1001075 ~ 1010875 (+) True si:ch211-243g18.2
XM_043251184.1 mRNA downstream 42345 1001075 ~ 1010875 (+) False si:ch211-243g18.2
XM_043250309.1 mRNA downstream 59615 1018345 ~ 1040944 (+) True rc3h2
XM_043250303.1 mRNA downstream 83309 1042039 ~ 1112174 (+) True LOC122352732
TU109131 other upstream 150 934069 ~ 945853 (+) True rbm18
TU108992 other upstream 250080 693200 ~ 695923 (+) True isl1b
TU108810 other upstream 547147 398268 ~ 398856 (+) False c10h5orf63
TU109829 other downstream 1152466 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1235367 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1630415 2589145 ~ 2705339 (+) False cntfr
TU110065 other downstream 1819129 2777859 ~ 2780475 (+) True il11ra
XR_006251933.1 other downstream 2610548 3569278 ~ 3572120 (+) False LOC122352855

Expression Profile