RNA id: XR_006251917.1


Basic Information

Item Value
RNA id XR_006251917.1
length 7062
RNA type transcript
GC content 0.45
exon number 22
gene id LOC122352715
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11176569 ~ 11207252 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACACAGTGTGCACACGGGCTTCATAACAGAGCAGTCAGTGGGAACACTTGAACGCACAGAGGGGGAGGAGGGCTGCGAGAGAAAACAAACCGAGAAAATTGTTCGCCTGAAACGAAAGTAGCGATACCAAAGTGGCATTCGGCCCCCACCGTTATTCGTTTTCGGAGCGATCGGCGCGATTGCGATGTAGTTTTGTCGACTTCATGCTGCGGTGTTGCTCCTTTCCAAGCATCCggtaaaaataataagtgtCTGTGGGGCTACTGTACGGACGGCCAGTGCAGAACTGTTCTGATGTGTCAATAAGTTTGAGGCTGGAATGAGAAGGCCCTGGCGTTTCCACCGGATTTCAGGGGTCATCTTCATCGCATGATACAGCCTGACTGACAGATCCATCCTCATCTTTCAAATACCGTATTTCCATATTCTGTGGCTCTGGTCAGCAGCAGTATGAAGGGCGGAGGTGGAGGGAAAGAACCTCCGGTGGAGGGAGAGGTCAGCGGAAAGCGGCCCAAGCGCAAATGTCTGCAGTGGCACCCGCTGCTGGCCAAGAAAGCTCCAGACTTctctgaggaagaggaggaggaggatgaagaggagctGGAGAAGGAGCCGGTAATATGTGCAGAGAGTGGAGCGCAAGAGGGAGAGTGTGGTGGGATGGAAGATGACAGTGAGGAATACTCCTCTGAACAACGGGCTCGCCGGCCCATGAATGCCTTTCTGCTGTTCTGCAAACGGCATCGTTCACTGGTCCGACAGGAACATCCGCGACTAGACAACCGGGGAGCCACTAAGATCCTGGCGGACTGGTGGGCCGTACTGGACCCcaaagaaaagcagaaatacACAGACATGGCCAAGGAGTATAAGGACGCGTTCATGAAGGCTAATCCTGGTTACAAATGGTGTCCCGCCACCAACAAGCCGGTAAAAAGTTCTTCTCACTCTGTGAGTAACACCCGCAAGAAAGTCTGGTCTCTTCCATCCAACCCTAGCAAGGAATCTTCAGTTGCCAAAAAGCAGCCCAAATCTGACAGCACACCCCAGCTCAACTTCGCCATGGCTGATCCTAATAAGATGGGTGGCTTAAGCATGCTGCTGTTAGCCGGGGAGCACGCACTGACCGCCAGAGAGatttcctccagctcttcccaGACAGGATGCACAGATGTTGCTAAGCACACTGGGAAATCAGCCCTTTTCCAGCTGGCTGAGATTTCTTCCAGTCCAGTGCAGCCAGTTGGGGGAAGTAAGAACGCTGAAGACACAAGCTCTCTCACGCATGTAGAGGCCTCCGGACCATCTCAGCCAAGTTCACCAGACCTGCCCAAGAGTTGTGTTAAATCCCCCTTGTTTCAGCTGGCTGAGATCTCCTCCAGTAGGTCTCAGTCAGCGTCTGAGGGAAGGCAGTGCGGCCAGTCGGCTCTTTTCCAGCTCGCTGAGATGTGTTTGGCCTCTGAGGCTGAAAAGATGGAAGCTCGATCCTCCCAGCCCTCTGGCGGTTCTTCTTCACTCTGTGCTCAGCACAGCTCAAGTAGCAGAGTCACCGAAGAAAATGAAGAGCAGGCGGACGCTCCTGAACTTCCTGTCACCACaacatcatcctcatcatcctccACCTCGTCCTCCCCTACTGACGCCGCCCCATCTGATCTCAGCCCCTGCAAGAcgctgaagaagaagaaaaagaaaaaagaaaataaagacgCGGACGAAAATCCTGCATCGCCCAAAAAAGCGAAAAAGCGACATTCGCCCGAGTCGGACCTGGACAGCGTGATGTTCACCATCGAAGCAGTAGCAAAAGGTGCTTGGGGTTCGGAAGAAACACCCAAGAAGAAAGCTCGTTCCTCAGAAAGTGAGAGCAGCCCCTCAACAGACCAATCTCCGGCggtgaagaagaaaacaaaacctaaatcgAAAAAACTGTTGAAGCTGAAAGACAACGAcgcagaggaagaggaagaaggggATGAAGAGACCAATAAACCGCAGGACGTAGAGATGAAATCTGAGGAAGCTCCTCTGACCCCTAAAGATGAGTGTGAGAAAGAGCCAGACATGAAGGTGGAGCCCCCTGTTGACATGGAGGACATGGCACCGCACTGCTCTCACCCCACAGACTTGGAGGAGAAAGACACAGACACCAAACCACCACAAACCAGACAGGAAGACAGAGACCAAGAGGTTAAGCCAGAGACCTGTGGGTCTAGAAAGTCAGAGCGAAGCTGTAAAGGAGCACTTTATAAGACTCTGGTGTCTGAAGGGATGCTTACATCTCTGAGAGCAAATGTGGACagagGGAAAAGAGGATCCATGCGAGGAAGTGTGTCCGATCATGAGGGCGGCTGGAATGACGAGAGCTGGGGATTTTCTCAAGCTGCTACCAGCAACCCAAAAAAACTCAAGAAGTCCAAATCTAAAGAGGAAACCACCCCAGGACTAGGAAAGCTTGAGGAGGAGTTCGAGAAAAAGTTCAACAGCTTACCGCAGTACAGCCCCCTGACTTTTGACAAAAAGAGCGTGGCGGTaaccaagaagaaaaaaaacagtacgtCCAGCCCTCCTGAACCGCCCAAACTCTGCAAGGGTTCATCTTCATCTCAGAAAAAGACCTTATTCCACAAGATAGTGAACAAGTACAAACACAGGAAGGAGAAATCCAGTGCCGCAGACAAAGATGTCGTCCCAACTGACCCTGTGGGTACAGAATCAAGTCCAGTGGTGAAGTCAGGCAGTCCGTGTGTGTCTCCCTCCCCTGAACCCCAGAAGGTTCTGGATACACCTGTGGGCAGTCAGAAGAGAAAGGCCAGGAAGAGTAAAATCACACACTTGGTGCGCACGGCTGATGGACGAGTGTCACCTGCAGAGGCAGAAGAGAAATCAAAGGATCAGACCAAGAATCAGGATGAAAAGCCATTCACTCAAGAGACATTATGCAATAGGGGGGTCTGCTACGATGACCCCAGATCAGCAGAAGCGGACGTGACGGATGCGTCCGGTGGCCTCCCGGCTTTCTTCAGCTTGGCTGCTCTGGCTGAGGTCGCAGCCATGGAGAATGTGCACAGAGCCCAGCGTGCTGTGAGCATCCCCACTGAAGGTCAAGTGAAGGACATGGCTCCTGTGCTGATTTCCTGTGCGGACCAGTGAGGCCTCAGCCTGGCCCGGGACAGGTTTAGTCCGGACTGGGATTATGTACGGACATGCTGGGGCCTTAATCTTGACCCTCGGCCTCGGATGCCGGGGGGAAAGAGCGATCGAGAGTGAGAGAGACTGGAAAGGGATGAGGGAAGCTCTGAGCCGGATGAAGATGTTTTATCCCAGAAGCTTTCACCTTACACCCAACCCcatcctccctccctccctccctctcacCCCCTCAGGGCCCCGGGGAAGCCAATTCTGGTCCCTACGCCTGTTTCCTCTGGTGGCTCCGGACCAGTTTTCAGACAATTTACAATCTGCAAGAAATGGCTACTATTTAAGGTCAAGTTTTGcctacaaaaagtgcatttgaagCAAGTGctccctctctgtctttctctatCTTTACGTTTCTGTTCCTGGTCAGCTTCAATGCACAACCGTCGTTTTTCACACAGCAGCGTACACCTTCTCTCGGTCAGAGGAACGTTTTGTGGCTTCCTGTCCCCCTTCTTTGCTCTGAATCTtacgaagagagagagagagaatgagtgtTTTCAGACTGCTTAACCTCAGCCTCATACCTCACAAACCTGTTCAGATTTGTTCTCTGCACAGAAGCGCCACCTTCACCTTCATAATGCACAGTTCGATGCCTAGATGCCTCTTTCTTTCAAGCAATGACCCTCAATGTGTCCGGTGCCTCTGTCGATGACAGTTGTTCAGAGATAAACCACCTGTTTTCCACTCACAGACAGCAGCGATGTGTCGGGGGAAAGCCGGATGTTTGCATAAGCTGTGCTGCGGTTGACGAGCAGGGTCCAAAATTAGCACTTGCAAAGCatagaatattttattatattcatttacattaccGTTCAAAAGACCGGGATCTGTAATAATGCTTTCGAAAGAAGTCTCTTACGATCACCAGTGTTGTATTTATTcaatcagaaatacagtaatattgtgaaatattattacaattttaaatatttattttctattttcaaatctaatttattcctgtgacggcaaagctgaattttccgcatcattattccagttttcagtgtcatgtgatcctaattattttaatatgctgatttggtgcttaagaaacattctTATTAACAACCATGTTGAATACAGCCGTGCTGCTTCTCGATGCCTTTTTCGGTTTCTTTGAGCAGAACGTTTAAAAGAATaagaatgttttgtaacatcataaatgttGCTGCCACTTtcgatcagtttaatgcatctttgctgaataaaagtattaatttctttcagaaaagAATTACTGACCGCTTTTGAACGGTaatgtatattgtaaaaaaaaataaaatttctatAGATTTTTTGCAATGTGAAATAATCAGAAATAGTTCATATTTCTGGcctacaatttttttaattcatcaacTGTTGGCATCGAAAAGAGTTTACCCTGCTAGACTGAATCACCCGATGGAAAGGCAGTTGAACGTTTTTTATATCGTGACACCCCGTCACTTTTAGCTCTACGCTCTTCTGTGACATGTACAGCTATCAGTGAGTTCATTATCAGAGCAGTATGGCGATACTTGAacgaaaaaatgcattttatgtcaaTACTTGACCTTACTGCAGTGTGTAGCGTCTTGCTGGCTAATCCAAAAGAGTGCTACTCCTCTCTAATATAGTTTAATAATAGACACTGCACTAATTTTTAGCTACCGTAGACAATGCTTTTAGTTGTCCTTGGCTTTCGTTATAATAgtaagttttgttttagttttagtctcAAGTTAGCTTTTGTATCATCACTGAGATACTCAGccctcgtttttttttgttgttgtttttttcctgtacCTGAGGCTGTAGACGCCATTCCAGCTCAAAGTTTTGCTGATTCTGTCCATTCCTCCAAGCACATGGTGGGAGAGAGTTcgagaggaaaagaaaactgGGATTGACGTAGAAGAGAAAggcggattttttttttctctctctctctttctctcacagacACGCACAGACACCTTGAATTGTGGGAGTCAGCATAGCATGTTCTCCCGCGACGCACACATCCTGTGTTTTAGGCACTTGTGAGTCAGATTCTGGTCTTCAAACCAGATTTGAGTGTGCTGTGTGTAAATGACACGTAGCAAAAAATCACGTTCTTACTCGTATGTTTGTCTCGTTaacatatcaaaaaaaaaattcttcgaACAAGATCTGTTTATTTGAGAAGCAGGAATGTGTGTTTGGCTTTTCcctcaatattttaaaatgaaaaccgtGTTAAATTTTCTTGAATTTATACTTAAAACATATGACAAATATGACTTTTGGGGTTTTAAAGCTAATGGGTTTTAATTTAAGTGAGTAATGTTTTTGAGTGATTCGCTAAAATCGATTCATTCAGTGAACCTTTGTACTGGTTGCGTCATTATTCCAGGAAGCGTTGAGAAGCAAATGTCATTTTGTGAGTTATGAGGAAGTTCTGAATCATTTACGGTACTTGACTGAATCTTTACAAACAACAGTGTTGTTCACAATCAAAGCAAGCCTTTATTAAAAAGTGAGTGCCTACAAATTGGAGAAAGGAACATGATTCCTCTGCTTAatggatttgtttaaaaactgatCTGTTTCATTTATTCTTCTATGATCTTGCGCAGTTTTGCTTCTCAGctTCACGCTGTGTGCATGTGAGGgtTTGATTGTTTTCAGAGCAGTTGAAGGAGAAACTGTCCATCTTCCCTGTCCCTTACTCCTTAATGGCAGTGAACAAGTTTCTGTAGACTGGACAAAATATAGAACAAATAGCACAATTATTTGTAAATGGAGTATTAACAGCATTACTGAATCTCACGGAGAATGCATTCCTCATTTCGAATTCAACAAGACTTCTTTCACATTAAGTGTAGTAAATGTTCAGCTCAGTGACTCCGGTAACTACAGCTGTAAAATAACAAGATTTATTCCACCGCCGATATTAGACAGCACCTCAAATATGACGCTCCAAGTTGCAGTGCGTCCACATCTGTCTCTGAAGAAACTGAACAGCAGTAATGAAACCTGTGTCCATCTGCGCTGCTCTCTGGAGAATCTGCAGCCGGGGCAGGTGAACTTCATCTGGGACAGAGAGGGTCACGGGTCTCTCCGTTCAGTCCTGAATAACTCCATGAACAGTGAGCTGCTTCTGTGTAAACCTGACTGGAGCGATGGAGACACAATCACCTGTTACGCCAAATacttacaaacacaaacactgtacAGCTGCAATATTACACTTGACTTCAGACATAAAGCAGGCCGTTTTCCAGTTTGTGTGGTTCTTTTCGGCATCTTCATCATCAGCATAGTTTTCATCTGGATGTTGTTTTTCGTATTgcaatATAAGGACCATAATCAGAAGAACTTGAGTCATTCtctactgtaatatttttaaaagtactgtCTTTTGGATATTTCACTGTATGCTTAAATGCTTATGTTAAATACATAACTAGCATGTGGTACGACGTATAATAAACCGCAAATAGGCCTTCTTCTCTGTTGTCTGTGAGATCTTTTGATTTTGAagctttttaattcaaatgaaagctGAAGGTGTCATTTGACTTGCTGTATAAATGTCTATGTGGGTTATTCACTTTTATACACCCTTAAAATGCTAGTCCAATTACAAACGAGAGACATTTGTCATATTGTGGTTGGGTGCATGGGCAGGAAGTTCATTACTTGTGGTTTTTGCGTGGAGACGCTCAGCTCATAGTGTTCAGTCAACATGTTTTAAGATGGATTACAAACTGccattaattttttactttaacttttttcaaaaatgcaagCAAGAGACTTCAGTGTCATGTAATGTCTAGCTAGTGACTTGGAAATAACTGACTAATAATAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113412 lncRNA downstream 65734 11096963 ~ 11110835 (-) True G76642
TU113395 lncRNA downstream 85508 11087586 ~ 11091061 (-) True G76627
XR_006251883.1 lncRNA downstream 131716 11026069 ~ 11044853 (-) True LOC122352521
XR_006251882.1 lncRNA downstream 137769 11035692 ~ 11038800 (-) True LOC122352520
TU113402 lncRNA downstream 182143 10994218 ~ 10994426 (-) True G76632
TU113433 lncRNA upstream 12943 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA upstream 29146 11234372 ~ 11235690 (-) True G76662
TU113502 lncRNA upstream 280680 11485906 ~ 11486428 (-) True G76693
TU113507 lncRNA upstream 300084 11505310 ~ 11584960 (-) False ccdc83
TU113584 lncRNA upstream 496645 11701871 ~ 11766210 (-) False G76755
XM_043250272.1 mRNA downstream 4255 11168125 ~ 11172314 (-) True LOC122352716
XM_043250273.1 mRNA downstream 4255 11168126 ~ 11172314 (-) False LOC122352716
XM_043249972.1 mRNA downstream 17835 11151111 ~ 11158734 (-) True LOC122352533
XM_043249949.1 mRNA downstream 26793 11145385 ~ 11149776 (-) False btg3
XM_043251131.1 mRNA upstream 85672 11290898 ~ 11350637 (-) False alcama
XM_043251130.1 mRNA upstream 85672 11290898 ~ 11350637 (-) True alcama
XM_043250117.1 mRNA upstream 247397 11452623 ~ 11457502 (-) True si:ch211-103f14.3
XM_043250856.1 mRNA upstream 253607 11458833 ~ 11466838 (-) True zpld1a
XM_043250114.1 mRNA upstream 300975 11506201 ~ 11510464 (-) True ccdc83
TU113393 other downstream 137838 11017110 ~ 11038731 (-) True G76625
XR_006251871.1 other downstream 192831 10977936 ~ 10983738 (-) False rps6kb1a
XR_006251870.1 other downstream 192832 10976328 ~ 10983737 (-) False rps6kb1a
TU113196 other downstream 696380 10478059 ~ 10480189 (-) True G76498
TU113103 other downstream 793260 10380096 ~ 10383309 (-) False G76438
TU113815 other upstream 1577127 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 2333503 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 2438065 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2600893 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2997036 14202262 ~ 14204127 (-) True G77440

Expression Profile