RNA id: XM_043250273.1


Basic Information

Item Value
RNA id XM_043250273.1
length 2115
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122352716
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11168125 ~ 11172314 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATGGAGACGAGCAATTACGTTGAAGGCAATGTTCGTTTTAAACAAGCACGATTTGTATCAAAGTGTCTCTCAGAGTGTTTGACCAACGGAATcaagacagtttttttttttattttgacttgcGCTCTAGATTGTGGGTGGGCACATGGTCAGGAAGTTCATCactcagtatgtgtgtgttcgtgtACAGAAGTGTAACACACGCTGATCTTATcgacatgcttttaaaatggattacgaactgtcttttatttttgtcttcaaTTTATCTCACACATACAGATGCAGAGAATGTTTTCAGGGCAGTTGAAGGAGAAACTGTCCATCTTCCCTGTCCCTTACTCCTTAATGGCAGTGAACAAGTTTCTGTAGACTGGACAAAATATAGAACAAATAGCACAATTATTTGTAAATGGAGTATTAACAGCATTACTGAATCTCACGGAGAATGCATTCCTCGTTTCAAATTCAACAAGACTTCTTTCACATTAAGTGTAGTAAATGTTCAGCTCAGTGACTCCGGTAACTATAGCTGTAAAATAACAAGATTTATTCCACCGCCGATATTAGACAGCACCTCAAATATGACGCTCCAAGTTGCAGTGCGTCCACATCTGTCTCTGAAGAAACTGAACAGCAGTAATGAAACCTGTGTCCATCTGCGCTGCTCTCTGGAGAATCTGCAGCCGGGGCAGGTGAACTTCACCTGGGACAGAGAGGGTCACGGGTCTCTCCGTTCAGTCCTGAATAACTCCATGAACAGTGAGCTGCTTCTGTGTAAACCTGACTGGAGCGATGGAGACACAATCACCTGTTACGCCAAATacttacaaacacaaacactgtacAGCTGCAATATTACACTTGACTTCAGACATAAAGTTGCAGGAGTCCAGCTGCTGATCATCTCATGCAGTGCTGCCGCAGGCCTCATCCTCTGCATCATCACCACCGTTGTCATTTGCAAATGCAGAAAGCGAGATAAAAATGGATCTATAGTGTTCAGCAATAAAGTCTATGAGAACTTCAGTTTCGCCATGGCCCATCAGAACACACAGCTCAATGATAAACCACAACCAGAAGAGTGTGTTTATGAAAACTAACTGCTGCTGCTTGCTTCAAAGTCAGATTCCCCCGGGGGTTATAATGTGTGGTTTTGCTAAGATATTTAAGCAAAAGCTCTCTCTGTATTGTTTACAATGCCTTTACTGGCTTCCAAAACTGTAAGCGGgtgctttaaacatttaaatctatttaagtatCTTGTTTAGTGCACTGTAGGTGCAATAAACTGTTCTGCCTTCTAaatgaaattgaattaaattattattaatggcaAGGATTTCAtacccattttcttttttacaatgcCAAGgcattattaaaacttttatttgcacTTTTTGTCGTACGACTTTGGTTTTTGCTATGGTGTTTAATCTaagtatattgtaatatttcattacttGTGAATAAATAGCacattaaaagtgttttgtgtCAAAGCCTCTATGTTGTCCAACCAAACCATGATAATGATTATCTTTGGGTtgcaatgaaaaatacaaaaatttgtttattacttattaattgGAATAGTTGGAGTTCAGTTACCTTCTATCATGAGTACATGCCTATTGTTTATTTAGCACTACTAAATTTATTACACTACGACTTTATTTGTCAATCTTGGAGAGTCTGCCAAAATTAGATGCAACTACAACCGAACAAATGACACGGAAAGCATGACAGCAGTTCTGCAAACGTTAAATCACACACTGTGTTCATATTTCTTACTTGAGAATACATGGAAGAAACTACATTGTGAAGATCACAGCAGGTTCATATGGATTCCAGAAACTAAGGAAATAACATTTGAGCTCTTAAATCTTCAAATTAAGGATATCGGCACATACACCTGTACTGTGAAGAGGATTGTAAAACCACCTCAAGTGGATCTGGGAGTGCAAAAAATTCAAGTTATtgTTGTGGATCAGAGACGGAGAAGTCCTCAAcagctcacacacaaacaaatcattcaATGGATCCTTTAGTCAGAAATCGTACCTCATACTGCCACCACGAAACATCAATGATATAATCTACTCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113412 lncRNA downstream 57291 11096963 ~ 11110835 (-) True G76642
TU113395 lncRNA downstream 77065 11087586 ~ 11091061 (-) True G76627
XR_006251883.1 lncRNA downstream 123273 11026069 ~ 11044853 (-) True LOC122352521
XR_006251882.1 lncRNA downstream 129326 11035692 ~ 11038800 (-) True LOC122352520
TU113402 lncRNA downstream 173700 10994218 ~ 10994426 (-) True G76632
TU113433 lncRNA upstream 45855 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA upstream 62058 11234372 ~ 11235690 (-) True G76662
TU113502 lncRNA upstream 313592 11485906 ~ 11486428 (-) True G76693
TU113507 lncRNA upstream 332996 11505310 ~ 11584960 (-) False ccdc83
TU113584 lncRNA upstream 529557 11701871 ~ 11766210 (-) False G76755
XM_043249972.1 mRNA downstream 9392 11151111 ~ 11158734 (-) True LOC122352533
XM_043249948.1 mRNA downstream 18294 11145385 ~ 11149832 (-) True btg3
XM_043249949.1 mRNA downstream 18350 11145385 ~ 11149776 (-) False btg3
XM_043249950.1 mRNA downstream 18433 11145385 ~ 11149693 (-) False btg3
XM_043249947.1 mRNA downstream 29435 11081639 ~ 11138691 (-) True LOC122352515
XM_043250270.1 mRNA upstream 10424 11182738 ~ 11205226 (-) False LOC122352715
XM_043251131.1 mRNA upstream 118584 11290898 ~ 11350637 (-) False alcama
XM_043251130.1 mRNA upstream 118584 11290898 ~ 11350637 (-) True alcama
XM_043250117.1 mRNA upstream 280309 11452623 ~ 11457502 (-) True si:ch211-103f14.3
XM_043250856.1 mRNA upstream 286519 11458833 ~ 11466838 (-) True zpld1a
TU113393 other downstream 129395 11017110 ~ 11038731 (-) True G76625
XR_006251871.1 other downstream 184388 10977936 ~ 10983738 (-) False rps6kb1a
XR_006251870.1 other downstream 184389 10976328 ~ 10983737 (-) False rps6kb1a
TU113196 other downstream 687937 10478059 ~ 10480189 (-) True G76498
TU113103 other downstream 784817 10380096 ~ 10383309 (-) False G76438
XR_006251915.1 other upstream 4255 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other upstream 4255 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other upstream 4255 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other upstream 4255 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other upstream 4255 11176569 ~ 11205226 (-) False LOC122352715

Expression Profile