RNA id: XM_043250282.1


Basic Information

Item Value
RNA id XM_043250282.1
length 5792
RNA type mRNA
GC content 0.49
exon number 30
gene id sec31a
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3644069 ~ 3663881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGTTGTGCCACGTTGATGGACAGCACTGGGGACGTGGAGCTCTGTCCATCTGCAGACAAACCTCACGCTAACCCACGGATATCGTAAAGTTATCCCGCTAATTCTCTCTAACTGTCGTGTTTGTGCGTGGATGAGTCTGTGTGTGACCGCTGGAAGCGCGACGAGAAAAGgATGAAGCTAAAAGAAATTAACCGAACAGCTATCCAGGCCTGGAGTCCGGCTCAACAGCACCCCATCTATCTGGCAGCAGGTACATCAGCCCAGCAGCTCGATGCCACCTTCAGCACCAATGCGTCTCTGGAGATCTTTGAATTGGATCTGGCTGATCCCTCTTTATCCATGAAGTCATGTGGTTCTTTCTCCTCTCCACACAGATACCACAAACTCGTCTGGGGTCCACATGGCATTGAAGACCAGAGTTTGCCATCGGGTGTCCTCATCGCAGGAGGAGAGAATGGCAACATCATCCTTTATGACGCCTCCAAAATCGTTGCTGGAGACAGCGAAGTGATTATTTCCCAGAGTGAGAAACATACAGGACCTGTAAGAGCTCTCGATGTCAACTCGTTTCAGgcAAACCTTGTGGCCTCTGGTGGAAATGAGTCCGAAATCTACATTTGGGATTTGAACAACTTAAGCTCCCCAATGACGCCAGGACCCAAAACGCAGCCCCTAGAGGACATCAGCTGTGTAGCGTGGAACAAACAGGTGCAACACATCCTGGCCTCAGCCAGTCCCAGCGGAAAAGCTTCAGTCTGGGATCTGAGAAAGAACGACCTGATAATCAAAGTCAGCGACCACAGCAACAGGATGCATTGCTCGGGTCTGGCCTGGAACCCGGAGGTGGCCACTCAGCTGGTTCTGGCGTCTGAAGACGACCGAATGCCCGTCATCCAAATGTGGGACCTGCGCTTTGCCACATCCCCTCTCAAAGTGCTGGAGAGCCACACAAGAGGGGTTTTGGCGATTGCCTGGAGTGAAGCAGACCCAGAGCTGCTCCTGAGCTGCGGGAAAGATAACCGCATCCTGTGTTGGAACCCCAACACGGCTGAGGTGCTGTATGAGCTGCCTACCAGTACTCAGTGGTGTTTTGACATCCAGTGGTGTCCCAGGAACCCAGCTGTGCTCTCTGCTGCTGCCTTTGATGGCCATATCAGCATATACTCCGTTATGGGAGGAAGCAATGACAACGCTGTTACTTTACAGGCTGAACAGTTAAGCAGCTCGTTTGGAAATATGGATCCTTTTGGTACAGGCAAGATGCTGCCACCTTTACAGCTGCCTCAGACCACCACGTCCCAAAGCACAGTCACACCTCTCAAAAAACCCCCCAAATGGATCCGCAGACCAGTTGGAGCATCTTTTGCTTTTGGTGGAAAGCTAGTTACTTTGGATAACATTAAGCCTGCGGCCCAACAGCCCCAGCAGACCTCTGCCCATGTCGTTCATATCAGTCAGGTTGTGACGGAAACAGATTTTCTTGATCGCTCGAACCAACTTCAATCAACCCTCACTGTAGGAAATTTTCTTGAGTACTGCCAAACCAAGATTGAAGCTGCTCAGAGTGAATTTGAGAAGACCGTATGGTCTTTTCTGAAGGTGAACTTTGAAGAAGATGCACGGGGGAAATATTTGGACCTTTTGGGATACAAGAAGGAAGAGCTCGCTTTAAAGATTGCATCAGCATTAGAAAGGAACTGCAAATCTGATGAGGCAGATGTGctttCAGTCATACCTTCTTCCATACCTCACCATTATCCTGCTCCTGTTCCCATCTCAAACCTTGTGCCTGACTCTGTTTCTAAGACTGAACCAGTCCTTGAAACTGAACCCCTTGCTGTGTCAGCTCAGCCTCATCTCGAGCCAAAATATCCAAGTCCTACAAACCTTCAGTTAAACCTTGAGTCTCTTAACGAATCGTTGCTTGAGCCCACAATTGCTCCCAGTGCCAGAACTCAGAAACCTCAGTCACAGCCCTTAGTGGACTTCACCCCACCAGTAGCCACCACCTTCTTTGACCAGATGCCTCTTGTTGAACTCACCTACTCCTTTGACCAGACTCCAATATCCACACCTACATCACAGGTTGATTCTACTGGTCAAATgatggtcaatcctcaagagcaATCGCAGTCAGTGCCACTCTTTGAACCTCACCACCTGGGATCTTCAGATAAACTGGAAGAGTCTCTTCTTTCACGTGAACAAATAGTTGAGTTTCAGCAGTCTGTGCCAGTCAATCAACAAGCATCCGGTGAAGTGCGTTCTGGACTGGTGCTGCCAGCTGAACCTTTCGAGTCTTTACAAGAACCTACTATTGAATTACAACCGCCAGCACCTGATGTGATGCCACCATGTAGTAGCTCTCAGCCATTGGCCGCTCCTGGCCTTTCTCCAGATATCTTTCCTCAAGAAGCCATGAGCTTGCAAACTCCAGTTGACTCCCAACCTCTTGCGCCAGAATCTGATTTGATGACTCATCATCCTGTTTCTGAGACTGATCTTCTGAATAACAGTGATTACCAGCCTGTGCTACATCACAAAGAGGTTTCTGATTGTGGTGACCTAAATAAAGCCATGGTTAAAGAGGCAACAACCCTGAAGGAGCTTAAGAAGACAAGCcctgaagaggaagaagaagaagaagaagaaaaagaagagccTGCCACTAAGACACTGGACCTAGATGAGATTCCTTTTGAAGATGAAGAACCTGCTGCTGAGGAGACATCCAAGGATGTTATTCCAGTTCCTGCTTTAGACACTGTTAACCTCAAAGTTAGCCAGGacattgATGGGCTGATCACCCAGGCACTGCTGACTGGGGATTACGAAGCTGCTGTTGACCTCTGTCTGCATGATAACCGAATGGCTGACGGCATCATCCTGGCAATTGCTGGAGGTCCCAAGCTTCTGGAGAAGACTCAGAAGAAATACTTCAGCAAAACTCAAAGCAAAATCTCTAAGctcatTAGTGCTGTGGTGATGAAGGATTGGTTGGACATTTTGGAGACATGTGACCTGCAGAACTGGAAGGAAGCTCTAGCTGCAGTTATGACTTACGCAAAGCCAGAGGAGTTCTCCTCACTCTGTGGTCTGCTGGGCTCCAGGCTGGAGGCTGCGGAGGACATGGCTCTGAAGGCCCAAGCCTGTCTGTGCTACATCTGCGCAGGCACGGTAGAGCAGCTGGTCTCCTACTGGGCCAAAGCTCAGGACTCCTGCAGCCCGCTGGCACTGCAGGAGCTAGTTGAGAAGGTGGTGGTCCTACAGAGAGCTGTGCTGAAAGCTCAGGGTGGTGTGTCTCCTGATACGGGTGCACTGCTGGCAGAGAAGATGAATCAGTACGCCAGTCTGCTGGCGTCACAGGGCAGCTTACAGACGGCCATATCCTACCTGCCCACCAACACTCAACAGGTTGCTGTGCATCAGCTGCGTGATCGTCTGAGCCGAGCTCTGGGTCAGCAGCAGCAGTCTGGAGTCTCTGGAGCAAGGCAGGCGCTTCCCGCTGCTGTACCAGTGCAGACGTACACACAGCCTCAGCCTCCACAGGTCCCCGCACAGCCCGTCGCACCTGCCCAGTATTACCCACAGGGTAGATCCGCCACTACTGTCACGTCTTGGAGTAACCAAACCCCTACAGCTCTGCCCAGTGTCCCTCGCCCACTCGTGCCTGCTGCTGACCTGCAGGCGGAGTCCTCCGCTCCAGCCTTTGGCCTTCAGTCTCCAGTGAGTGCGTCCATTCCTTCCTCCGCTCCGTTCATGTACTCCCAGCAGTACCAGAACTATCCTCCTACTCAGCAGTTCACTCCTGCCGCCGGGACACCTGGCATCTATCAGCCTCTTCAGTACTCTTCCTCCATggcttctcctcttcctcctccaccctcctcctcctcctcctcctctgtcgCTGCTGTCTATCCTCCACAGTTCATGCATCCTGCCTCCTCTCACCCTGCAGCTCCACCTGTGATCTCTGGGCCTCCTCAGGGAGGCCAGcctttctctcctcctctctcttctgGCGTGTCTTTCCAGCATGGTGGGCCAGGGTCGCCCGCGGCTTACGTTCCTCCTCCGGTCGCCAGAGCTCCAGGTACTCAGAATGAAAGCGCTCTGATTCCAGCCTCCCAGAGAACAGGAGGATTAAATCAGGACTCAGCCTGGTTTTTGGAAGGGCCTCAGAACGGCTGGAACGATCCTCCCGCTTTCAACAGAGCTCCCAAAAAGAAGAAGATGCCAGAAAACTTCACTCCACCAGCCCCCATTACAGCACCCATCATGGCCCCTCTAGGTCATGACCCTCAGGTCCCTGTTGCCCAAACAATGCAGACACTTCAGCCACAACAGCAGGGTCAAGATCAGCTTGTTGGCCCAGCCACCTTCACCCCCATCCAGCAGCAGCCACTGGGACCCCCGGGCAGAAACCCCAGCATGCCTCAGGGCAACATGGAGGGTGCGCCTGGAGCGCCAATTGGAGATGTCATAAAGCCACTTCAGTCCATACCGACTGAGAAGATAACTAAAAAGCCAATCCCTGAGGAGCACATGGTTCTGAAGACCACTTTTGAGGGACTGATCCAGAAGTGCCTGGCTGCTGCTTCAGACCCGCAAACCAAGAGGAAGTTGGATGATGCTCATAAGAGGCTCGAGTTTCTCTATGACAAGCTGAGAGAGCAAACGCTGTCTCCAGCTATCGTCGGTGGTCTGCACAGTATGGCCCGCAGCATCGAGAACCGCTTGTACGCCGACGGACTCAACATCCACACGCACATTGTGAGCAGCAGCAACTTCAGCGAAACGTCTGCCTTCATGCCCGTGCTGAAGGTGGTGCTGACACAGGCCAACAAACTGGGTGTTTGATATCCGCTCTCTTTAACACACGAACCAACAAGTATTCTCAAACCCGCAAAGCCATCATTCCAGGACCAGTTGCGCATATACTGTGCCAGTCTTAACCGGTCTGGTTTACAGCGACGTTTTagtttattcttttgtttttgtcacttgtgttttaatgttgtcattattacatatttgtaaTCATGACAGAGCAGAGTGCAATAGGGCTTTCCCTTTTTATGTCTCCGGTTTTAATGGTAAattagcttcataaaattatatgCGAGTTTTATGCTTTACTGAAGACTAGCTGCAAGCTAATCGTTTCCTGCGCATCGTTCTTAATTTATGCTGTTCACCTGgcattattattttgagttttaagATGTTTACGATTATTACAGCTCCTCTGCATTTCAATTTGTTTTCTGGGAATCTTCTTTGATTTGCATTACGACATCATTTCTGCAGATACATTTTGGATATGGCATTAAGGTAACATGCCAAAAGAAATTTgcaataaatttttatttaagcagTTTAATTGCTTTAGTGTTTGGCATTCGTACAACTGAAAATTTAAGATTAAATCACGATTTATGTTTGTTTCATAATAATGCTGCCTGTCTTTGTTGTACATCACTGTATGTTTTAGACATCTCTTCAGATCTTGCTTCTGAAATAAAGGGGCAAAAGAAACAGGATGTGTGTGGGGGAAATAAAAGGTCAGGCTACAATAAAgggaatgttttattttaatcacagtTTCAGCCAGCTATCATTGTTAGTACGTCTGTTTCGAGCAATGTTGCATATGGCTGCACAGAAGTTTGGAGGCTTGCTCTAAAACCCTGTTTTTTATGCAATCTGTGTACTGTCTCAGTAATTGAGATTGTACTGTAAATCTGATGActgttttgcagttttattaaaaacaaattgagACA

Function

GO: NA

KEGG:

id description
K14005 SEC31; protein transport protein SEC31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110304 lncRNA downstream 56175 3587435 ~ 3587894 (-) True G74551
TU110262 lncRNA downstream 110353 3309787 ~ 3533716 (-) True G74533
TU110268 lncRNA downstream 189075 3450537 ~ 3454994 (-) True G74537
TU110147 lncRNA downstream 594551 3049232 ~ 3049518 (-) True G74459
TU110143 lncRNA downstream 754121 2889445 ~ 2889948 (-) True G74455
TU110345 lncRNA upstream 35724 3699605 ~ 3700769 (-) True G74574
TU110414 lncRNA upstream 116178 3780059 ~ 3834370 (-) True G74614
TU110406 lncRNA upstream 157510 3821391 ~ 3824596 (-) True G74609
TU110425 lncRNA upstream 163244 3827125 ~ 3828028 (-) True G74624
TU110415 lncRNA upstream 167721 3831602 ~ 3832092 (-) True G74615
XM_043250481.1 mRNA downstream 18286 3617515 ~ 3625783 (-) False tmem150c
XM_043250482.1 mRNA downstream 18286 3617515 ~ 3625783 (-) False tmem150c
XM_043250480.1 mRNA downstream 18286 3617515 ~ 3625783 (-) True tmem150c
XM_043250476.1 mRNA downstream 31786 3607967 ~ 3612283 (-) False hnrnpdl
XM_043250477.1 mRNA downstream 31786 3607967 ~ 3612283 (-) False hnrnpdl
XM_043250199.1 mRNA upstream 179811 3843692 ~ 3879520 (-) True pam
XM_043250200.1 mRNA upstream 179811 3843692 ~ 3876554 (-) False pam
XM_043250198.1 mRNA upstream 179811 3843692 ~ 3876554 (-) False pam
XM_043250920.1 mRNA upstream 227761 3891642 ~ 3904123 (-) True pdzph1
XM_043250328.1 mRNA upstream 241733 3905614 ~ 3912742 (-) True LOC122352741
XR_006251926.1 other downstream 36281 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 304140 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1446758 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2156061 1484374 ~ 1488008 (-) False nrarpa
TU109556 other downstream 2156154 1484374 ~ 1487915 (-) False nrarpa
XR_006251921.1 other upstream 241733 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 241733 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 2874653 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2964544 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2964549 6628430 ~ 6631157 (-) False sprn2

Expression Profile