RNA id: XR_006251921.1


Basic Information

Item Value
RNA id XR_006251921.1
length 6186
RNA type transcript
GC content 0.42
exon number 3
gene id LOC122352741
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3905614 ~ 3912742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGCCTCAGATGGATCTTTAGAGGAATCGCAAACccccagaaaagaaaaaaaagccgaTTTCCCATCATTTCCATCGTCAACCGCGACATGACAACAGGGATTTAGAATTGCGTCTTTAAACATCGACATTTAGGTCATTTTGAGTGATACCATGCCAGAACAAAGCAATGATTACCGGGTGGTTGTGTTTGGAGCTGGAGGAGTGGGCAAAAGCTCTTTGGTCTTGCGTTTCGTGAAGGGAACCTTTCGCGAGAGCTACATCCCCACCATCGAGGACACCTACAGGCAGGTGATCAGCTGCGACAAGAGCATCTGCACTCTGCAGATCACAGACACCACGGGCAGTCACCAGTTTCCCGCCATGCAGCGTCTGTCCATCACCAAAGGCCACGCCTTCATCTTAGTCTACTCCATCACCAGCAAACAGTCCCTGGAGGAGCTCAAGCCCATCTTCGAGCAGATCTGCCTGATTAAGGGGGACATCGAGAACATCCCAATCATGCTGGTGGGCAACAAGAACGACGAGGTGAGCGCTCGTGAAGTGGAGAGCAGCGACGGAGAGACTTTGGCCAGGAGGTGGAAATGTGCCTTCATGGAGACGTCAGCTAAGACGAATCACAACGTCAAGGAGCTGTTTCAAGAGCTGCTTAATTTGGAGAAACGCAGGACTGTTAGCCTTCAGATCGACGGCAAGAAGAGCAAGCAGCAAAAACGAGCCGAGAAGCTCAAAGGCAAATGTGTGGTCATGTGAAAAAGCAAAACGTGCTCGGTCGTGATGCTCTGGCTAACACTGTTTACACCTGAAAACAGGATTGTTGGACACCTGTTTACACTTTTACAGGATTCAGTGAAACTCCAAAATCGTGGTAAACTTTTCCTTCTTCTTTGGAACAAAGAAgtgaaatttttaagaatacgccggctgctcttttccatatcACGAATTATACCATATAGTAATTGCTCTTTGACACGTTTTACAGTGGAGAAAAGCCTAGAGAATTCATGAAGTCTGCTTCAATGACTTCAGTTCTCTAGCTTGTCACGGATTGTGATGCCGCTGCAGGTTTGCACCAGATTTTAGTAACCAACCTGTTCGTctagaaaacagaaaagacagGTTGATGTGCACAAACCCAATGGCAGTGGTAATACCCTTTCTTTTATCAGTAATGTAGAAAGCAGTAAAATCAGTCCTTACTGTACAGGCTGGGCTGCAGCATATTATTGTACTGTATAACATATATGACATCTTATATGGCAGGTCACGATCGCATATATCAGCTGAATTGTAACACGTCGAGGCATGCAATCAGTAGTGAAGGTAGTAGTCAACCAAAATAAGCTAAATGGTTGTTGCTGTTAGTTGCGTGATTTATCATCAAAGATTTAATAAAGGCTGCTGTAGTTTTATCTCCATATGCCTTAGATTTAAAGCTCGTGAGGTATTGTATCCTTTTTAGAATTCGAGTTtagaaatgttctttttgaaAAGGCGGTTGACTATTTACTAGTACAGTATTTGTATTAAAGGATAGTACAGCACGGAAGAAAAGATCAGCTAAATTcacataaacattaattaattgtaaaatgaaCACACCCActgcaaaacagattttttttttgagtatttttgtcttttttttgttagtacAAACATTTGTTGTAGCTTTTGAGTTAAAATTGCGTTTTTTTATGCTGCTGACAgatatttattgtttgatttttttttttccacaaaacaatattttatgcCTTAAGACGTTTGGTTCGCTAATAAACGCATCTTGTTTGCAAGAATAGAAAACGAGACAAAAATACTAGAAAGAAAATCGGTTTTCTCAATGTGGCTGATTTGAACAttgtaaacattaatattaactgCTGACAAACTGACTAATAATTGGCAGTAGTGCTTTTTCGAGTGAACTAACATGAGCTATCGACTGCTGCATTTGTATTTACGCATATTTAGTGAAAAATCAGCAAGTGCTTTTGagagtgatatatatattttgtagttATATATTTCTAGCATGACAGGTCTTGTAATCAAGTTCAAGTGCTATGCTGTATTGAAACTCACTTGTCTGGTTAGAGTGATGTAATCAGCTGTTTACTAACTAGAATAGCGGAGACCTTTAATGCCGTATTTAACTCGAATTTGTTGCTGGCGAGAGTTGATGGCCATATGTAGCTATTATGGATGCTTGGTCCCAAAGCTTACAGTGGGTTTCTGTTCcgatatataaaatgtaataccgTTTTGATGAAATGCCTGTATGGACATCATGTGTGCCTACAACTTTTTACGATTGTATTATagatcacaagaataaattatattatgcatttgaTGCTGAATAGTCTCATTACACTCAGATGCTAATGACAGCTGTCGGGGGTTTTTTGAGTCATACATTAACTAGAAATGTATCCAACGTTTTAATGGTTTGCAGTAGAAGCCTCCTTCGTTTGAATTCAAACAATTGCGTGAAGGTCAGCCTACCAGCTGCTACATTTATGTGTGCACTTAATCAAACAGATGATGAATGGTTTGACTCCGAGCAGAAATGATGCTGGTGCGTGGGGGAAAGGCGAGGGAAGAACGTGTGTGGTATTTAGACATGTCAGAGTAATAAGCCCGCCTGCCTCATTACCGGCAAGTCAAGTGGCCTGCAGTATAATAGAGCACCTGCCAGCACTTAACAAGCATCAAGCCAGTAATGCAAGCTCTTTCACGATGAGCTCTGCCAGACTCAGGCACCATTAATCTGAGTAAAACATTCTGTTGTTTACAGAGTCagaataatcataatttataaCACCTATTTATAATGACcgcacgtgaatccctgatatgggccattaaaaaataataataatcaagaaaAAAGCACCATGCGGCGAGTAGAAGGAACGTTTGATGGAAAGGTGTTGGTAATTGTCATATGGTCAGGTGATTTAGCTGCTTaaactcaaatatttaaaaataactacagCACAAATCAAACCTGAAAGTTCTGCATATGCATATGGGTGCTTGATGCAGCTTACACTTGAAATGAATGACTTTCGGTCTATAGTTTGTCAGAGGTAATAGTGACTGTTGCATTCACAGCATAATAACTGTAATTTCGAGCAACACGTGACGTTCTACTGCAAGCTGTTCGCAACTTTGGACTCAGAACTATCATACTATCAATCCAACTCTCAATCCAGATTCACAAATTGTAATGATGAGTTCTACAAGGAATTAATAACCAACAAATAAggtaagaaaacagaaataatgccTTTGTGCTTCCTTTGTTTTATCTCTGTCTTTGGGGTTTTCCTAAGCCATTTCAGCTGCAATTGGTTGTGTCATGGAAAAGTGTTGAGGGAGGTTGGGGAGTTGAACAAGTCACGACTCTCCTCTGTCTTCATGCCCATTAAACTGCAGCTGTTGCTCCTGTCGAAGCCGCAAATGCATCCTGATAGGTTCCTGATAGTAATAGACCCATGAGATGAAGGCTTTGGCTGTGGGAGATGCTGTGCCAGTAGGTTCACTGTGTAAACAAGAATACTGAAAATGGGATGACGCACATCTGGTGTTTAACTGCACCTCATCATTGGCGCTATAAATCTTCCATTACATCTGTTCACCAATGAACCTACTGCCTTCAATGTGACCGCACCAGTGCACAAAAGTACAAATGAGTCACCAGGACCAATTCTCAGTGTAATCCAAGCTCATTGTGAATGCATACCTGTGCTGCTTCTATTATATGCAGTGAGTGGAACTTAAAGTGCCTTTAAAATTTATTCTAAACTGATGAACGTGAATCTGCGCTAAGATGTTAATGCTTCACTGTTTTTATAGagtagggaacacttattcactaacTATGACTCTCCctgaaataaattcacaatttgCTGCTGCTAATTAATAGTAGCTAATTAATAGTAACTAGTAGGatagtttttaagtttaggtattgggtaggattagggatgtaaaataaggtcttgtagaataaggcattaatatgtgcttaattagcactaataaattgctaatattctggtaataggcatgctaatagaGACGCTAAAATACAGTGTTACCACTCATACTCAACTGCACCATAAGCCTATCCGAAAATGTCAACTAAAGCAAACATtagattaaaatgcatttgaaaaaacaaatatttaattttagcttgCTTCTGAAAATCTTTGtggtttttaatcatttcaatcaacCGCAATGCTGTACCGGGTGCCCTACTGAGCAGGTTTACCACATCAGAAAAGCCATACACATGGACCTAGTTAtgtgattaaaaacatgaaatgcattaatttacaaatcatgcattatgatatattgttattattattgttgttgttattatatgtatttgtttcgGACATCTAtcttttttgtggtttaactgttgcattttaaagctgcagtctgttaGTTTTGCTTCTATGTTTGAAAACCTGGAATTGCAGTTGCAGAATTATATTTCATGCGTGGGGTTGTGCTCTGGCACAGCTCCAGCAAGAATTAatctaatgttttaaatgtgtagcTTTCCGTTACCACACCAGTGTGAATCTTGTACTAGGTCATAGATTCTAGCCTACGTCTTGGAATATGACACAAATAAGATttattgtcatctgaacaagtaaCACCTGCCACACTTTGTTCTGACTAACTGAGGAAAGTATTGGTATACCttattgtcaaattattaatgttaacaacagcATTGTGTGACTAAgtagtgtgtatttgtgtgtagtGCTAGTaacatgctaatcatgctagaataGCAACATAGCAACACTTTAGCAACCACCCAGGGTACCTTAGCAACCTCagagcaacaccttagcaaccaccccaggtaccatagcaaccaccctgagtgccctagcaaccacacagcaacaccATAGCAGGGTACCCCCAcgtaccctagcaaccgcatagcaacaccctagcaaccaccccaggTACCATAACAACCGCATAGctacaccttagcaaccacatagctaCACCTTAACAACCACCCGGGTACTCTAGCAACCACCTTAACAACCACTCCAAGtaacctagcaaccacatagcaatggCAAATCGTAGAGCATCTGGCCACTCGACAGGGCAAGAAGGAGCAGGAGCTTGCCGCCCTTCAGACGGCGTATTTACAAATGTTTGAAACCACCATCAACGCAGAGGGATGGCACCCAGATGATTGGGCGCGAGGGTTGACCCCCCTCTTAACCGGCAAAGCCCAACACACGTATTTCTCCCTTCCCTGTGAGGCCGCTGAGAAGTACACGGAACTGCGGAGAGAAATACTGGCTCGCCTTGACTTTCCCCTATCTCGGCTGCCCAGCAGTTTTACCCTTGGGAATACAACCCCCCATATTCGGGCCTGAGCTCAAGCCGCCGAACTGACCTGACTTGCACGTCACTGGCTATTATGTCAGGTAGCGAAGTGAGTCGTCGTAGACCATTTCCTGACAGCCGTTCTGCGGACCCAACAGTGGGAGCCTGGGGAGCAAGTGCCGCCATTTCCTTGGAGAGTGGTCCAGGAGTGACGCGCATTGGAGCGTAAAACCAGCTGCATTGTCCTCGAGGAGCCACCCCGTGGAGCACCAGAGGTGACCGTAAAAGTAAATGGGAAACCCTTTTGAGCCATCATGGATTCCAGCAGCGCTGTCACTTTTGTTTGGGCGAAAATCCTGGCTCCACGTCCTGAGAGCAAAGTCTTCATCCTCAACACACGACAAGTACCTAGTGCCAACCTACTGGCGATGTCGGGCTCCTGGCTCATAGAAGTGGGCGTGATGAAAGACCTACCTGTACCAGTGCTGCACGGACGGACCACCTGCTAGCCGCTGCCTCACAGCCTGCCAGCCCCAGCGGGAACCGCAGGCAACGGAGACCGGCCGGAGGACCATGACCACAACCAACATTGCTGGCCTCGACAGcgggagagatgGTTCCTGGTGGTTTGATGAATGCAGTTGTCTTGGACAATGCAAATGTCATTGAACCCTATGAAGTCAACAGACATCCTGATCTACATGACCATTAAAGTGTTTCAGTACCAGAATCAATACTGATAACgcttaaatgcaaataaaattctTTTGCAATTCAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110414 lncRNA downstream 71244 3780059 ~ 3834370 (-) True G74614
TU110415 lncRNA downstream 73522 3831602 ~ 3832092 (-) True G74615
TU110425 lncRNA downstream 77586 3827125 ~ 3828028 (-) True G74624
TU110406 lncRNA downstream 81018 3821391 ~ 3824596 (-) True G74609
TU110345 lncRNA downstream 204845 3699605 ~ 3700769 (-) True G74574
TU110585 lncRNA upstream 79445 3992187 ~ 3993434 (-) True G74739
TU110588 lncRNA upstream 85159 3997901 ~ 3999787 (-) True G74742
TU110583 lncRNA upstream 94488 4007230 ~ 4009374 (-) True G74737
TU110643 lncRNA upstream 168834 4081576 ~ 4530616 (-) False G74769
TU110644 lncRNA upstream 168834 4081576 ~ 4532236 (-) False G74769
XM_043250920.1 mRNA downstream 1491 3891642 ~ 3904123 (-) True pdzph1
XM_043250199.1 mRNA downstream 26094 3843692 ~ 3879520 (-) True pam
XM_043250200.1 mRNA downstream 29060 3843692 ~ 3876554 (-) False pam
XM_043250198.1 mRNA downstream 29060 3843692 ~ 3876554 (-) False pam
XM_043250282.1 mRNA downstream 241733 3644069 ~ 3663881 (-) True sec31a
XM_043250416.1 mRNA upstream 193266 4106008 ~ 4115776 (-) True ca9
XM_043250417.1 mRNA upstream 206636 4119378 ~ 4126532 (-) True dcp2
XM_043250373.1 mRNA upstream 219000 4131742 ~ 4153288 (-) True chd1
XM_043250428.1 mRNA upstream 242662 4155404 ~ 4164114 (-) True macir
XM_043250429.1 mRNA upstream 242662 4155404 ~ 4164095 (-) False macir
XR_006251926.1 other downstream 297826 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 565685 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1708303 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2417606 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 2417699 1483399 ~ 1487915 (-) True nrarpa
TU111527 other upstream 2625792 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2715683 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2715688 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 3264582 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 3265009 7177751 ~ 7180821 (-) True G75454

Expression Profile