RNA id: XM_043250347.1


Basic Information

Item Value
RNA id XM_043250347.1
length 7101
RNA type mRNA
GC content 0.46
exon number 21
gene id kdm6bb
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7782188 ~ 7810083 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTTCGCTGTCTCTccctctatttctctctctctctttctgctttctCGTACCATTCCTTCCCTTTCTTTGTCTGCTGAAGGAGTAGGCAGGGTGCAAATgtgagagaaagcgagagagtgtgttgagagagagaggggggtaAGAAAGGACAAGACAGAATGGACTAGGCACACTCGCCTTTTTGACAATAGAAgctcacttcctgtctgtcagTGGCGTTCCaaaagcTCAAATTGAAAGCGAGGGAAAGTGTAGTGATCTCTGTTGAGATCTGCAGTGGAGGGATTCTCAGACTCATCAGTGCGGCTGAATGTATCACATAGCAGAGCAGTATTCTGGACGTAACTCGTGGGACTCTTTCCCTTCTTCTGGGCCAAATCGAGCACCATGGGCCCCGGGCAGCAACCGGCACTGGGCCCCTCCATCCAGGTGCAGTGGAGGGAATTATCAATCCCAAAACTACACAGCAGGAAGAAGTTACCCAAATAAAGCTTATAACAACAGACCTCCAGGTTTCAGCAGGGACAGGCCCCACACACACCCCAGAGACAGAGGCATCGGAAAAGAGCAAAGGGTCCCGAGGGGCTGCGGACCAACACTGAGCCAGCACCACAATCCAGAACGCCCCACCCTAAACTACAACTCAGGGTGTGGAGGACACCTCTCTAGCAGCAACAATCACAGCAGCCAGCCACACAGGTATGGGGGTCCACATCAGCAGCAGCGTTCCACCGGGCGCCCCCCACAGACCCAGGGAGAAAAATGGACACAATCGACTCAGTCCAGGACATTCCAAGGCCCCTCTCTCAAACGTCCACCGCCTCCTCACAATATGTCACCACCACACCGGGATCCATCCCCTTCACGAGACGACTGTCCAAGCAAGAGGAGCAGGAGCGTAAGTTCACATCAGAATTTCCACACGAGAGAGAAATATTTCATCAACCGTCCACCTCCATCACACCCACCTCGGCCATGGAGCCCAGCATACAAAAACTCAATGCCCTGGAGCCTGTCTGAGAAGAGGTCCTCTCCCTCTCGCTTTCAGgagtccAGTCATTCAGTCATGAGAGATCACAGACCATATTCCATCCCATCGCCACCCAACAGTGCCCCTAGCCAGGGCCTTCACAGCAAGAAACCCACCAAACAGGGGCAACCCCATCATCCGGTCCGAGATCATCCAGGCCCCCATCCCCGTGGGGCCAAAGGGGGCTGGGACTGCCCACCACCAGCAAACCTCACCAGTGTGCCTTACAGTCAGCAGCACCAGCTCCCTCCACCACAGAGGCAcaccggccccttcagcagccCAGCCACCTCAGTACCTCAGCCCAGATTCAATACAGCACAGCCTGGCtggaaaacacagagaaaacatGGCAGCAGTGAGATGGGACGTACCACCTCTGATATGGAATCTCAAGAGTCTATGGGTGTGGACAGAAAACGGCCAAGTGCATCTAAACATATTAGCCGCCAACGGAGTCCCATCCAGCCATACAATAGTGCAGAGGGTAGAGTCACAGATTGTTCAGAATGGAGGAGCCCAGAGAATGGGTTAAAGAAACACTCGGATTCCCTTTTTGAACCCAGCACTCAAACCTCAGAAAGAGGTCCGAGGGCACAGAAGTCAGAAATGAAGAAGAGCAGGCATTCTAAACACCAGACTGGATTCAAATCCACCCACAAGAGCACCCTCAGCAAGCTGGACACTGAACTCTTGAAACACATTCAGGCCAAGAGGAGGCACAAGGAGCGTTTAAGgaggaaggagaaaaaaaaggaaggagaGCTGTTAGACACAAGagaagaaatggagaaaaaaatggaggacaggaaaaagaaaaaaatgagagaTGGAAGAAAGGGGCATGACAAGAAGAATATACATCAAAATGGTAAAAAGTTGGGACAGATAACAAGAGCAAaggaggaggggaaaaaaggaaCGCTTGAAGACAGGAAGAGTCGGACGCCAACTTCAAAGTCAGCATCTCCCAATTTAGGAACACTGTATCCCAGTGATTCTGAACCTCTGCTGGATGACCTACTGTCTGAGCCACTTCATCTCAATCACAGAGAGGAAGAGTTCTCTCAACATACCTCAGGGTTCATCCCACCTTCTAAATCTCCTCCTGTCAGTAATAATCATTGTTCTCCATGCCAATCAACTCATGAAGCCAATACTAAAGCCTTAGAGGTTGACAACCAATCCGAAACTTCTGAGCCTGACCACGTAGACACTAGCGATGATGACAGTGTAGAAGCCCATGATGTTGGCAGGTCCAAACATACTCTTCCTGATAAGCGGAAGGTTTGTGATGAAGAACCCATCAGAAGCAAGGAGGTTGTTTTAGGGTTGCATAGTGCCCCAGACCTCCTTCCAGCTCACTGCACCTATAGTGAAGAGCTTTTAAGGCTGGATCCACCAACAAGTCCACCTGTTCTGAGCTGGCAAGGCTCTCCAGTGTCGGACTTAGGTGACGATGATGAGGAAGGGAAAGAGGGAGATATGATTAGAGTTCTGAGGAGACCCGTGCTACAACCGAGTCCAACACACTCATCTCCACTAAGAGACCCAGTGGAGATCAACACTGGAGTTGACTATTGCCACAGTGACCTGGCCAGGTTGTATGGCCTTCCTGAGACCTCTAAAGCAATGGACACtgaggaagaggatgaagaaaagagagaaggagagcagAAATATAGTAGTCCTGATGCATCAAGCAGCTCTGAACCCAGCAAACCACACTTGCACCAAATGGACACATTTGAATCATCAACCTCAGCCATTAGCAGCCACAGATACACTTACAGGGGTGGGCCGTTTGGTCGGCCACCTCCTGGTGCTTTAGTTGGGGTAAAATACGCGTCATCTTTGTCCTTGGGTCCTGAGATACCCCCTCCAGACCAGCATAGTCCACCTGCCACATCTCCAACTATGGAAATCCCAGATCAGGTCACATCACCACTGATCGAGCCTGCAGATAAGGACAAAGAGAGTGAAACAGAGAACGAAAACATGGAAACCAATGCAATAGAGGATGAAAAAGAGATGGATAAACAAGTTGAGATCAAAGACACAACCTGCATTTCACTGGAGGAGAAGGAGCCTGTGATGTCTCCCGCCACCCTGCAGGCTAAACTATTACAAAGCTGCGAGCTACTGCTCAATCAAAACTCCAGCCCTGTGTCAAAGgcaatgaaagtcagtgggccCACATCtactgagaaagaaaaagaacaagacAGGGCCAGACAGAAAGATCAAGTGAGGTCTCCAAGAAAATCTGGTAAGAGCATAAAAGGAGAAGGTCCTGAGAAGTGTAATGGAGGAGAGAACAAAAAGGACATGGTGAAGGATGAGACAGAGACAAAGGATTCATCTTCTGAAAGTTTAGATGAGTACTTGGTGGAAATCAATAACAAACAGGTTGTCccagaaaaccaaaaaattgACTTAAAAGATGGAAATACAGAATCTAAAGACGtcgagagagaaaaagagacagatgTTAAAAAAGAGAGCATGAAAGAAGACACAGTAAAAGCTGATACATCTGCCACAGCATCATCTACATCTGCCACAACCAAGACACAAACCTCTGTTACTGTGACACCCTCCAGAAGACCTCTGCTGCTGGAACGAGTCAATCTCCTTAATCTGAAAGAGTTGTCTAAAATTCCCTTAAAAGAATTGAAGATCTGTTTGGTCAAGGTTGAGAGTGGAGGTCGGCAGACTTTCATTGCCTCAGAGATCGAGCAGAAGACCATGCCACTCAGTGCCatcaacatcaaaaataaagcagATGAGGTCATTCGAGCATGCAAAGGGGCAAACATCAAGAACAAGTTTCGGGAGTCATATCTGCTTCCAGAGTTTTCAGTGAAACCTGACCTTTCCACCAATGCTCCTATTCCCAGAGAGAAACTGAACCCTCCAACACCAAGCATTTATcTAGAGAGTAAAAGAGACGCTTTTTCTCCGGTGCTGCTGCAATTCTGCACAGATTCTAAAAATGCTGTTACTGTCATCAGAGGACTGGCTGGATCCCTCCGTCTCAATCTGGGTCTGTTCTCCACCAAATCCCTGGTGGAGGCCAACTCTGAGCATGCAGTGGAGGTGAGGACTCAGGTACAGCAGCCAGCCGACGAGAACTGGAACCATTCAGGATCCGCCCAGACCTGGCCCTGCGAAAGCAGCAGATCTCACACCACCATCGCTAAATACGCACAGTACCAAGCATCCAGTTTCCAGGAGAGCTTACAGGAAGAGAAAGACAGtgaagatgaggatgaagaagacAAATCAGAGGGAAATGTAACAAAATCCAACTCTGAAGGAAACACTCTGACTTCTACTACTGCTTCCAGCTCAGATCAGAAAGCCATTGGAAAAATCATTAAATTTGGAACCAACATTGACTTGTCAGACCCAAAACGGTGGAAGCTGCAGCTGCAGGAGCTGCTGAAGTTGCCCGCGTTCATGCGTGTTTCTTCCAGCACCAACATGCTGAGTCATGTTGGCCACACTATACTGGGCATGAACACTGTCCAGCTTTATATGAAGGTCCCTGGCAGCCGCACACCAGgACATCAGGAAAATAATAACTTCTGTTCAGTGAACATCAATATTGGCCCTGGAGACTGTGAGTGGTTTGCGGTCCATGAACACTACTGGAAAGCCATCAGTGACTTGTGCGAAAAGCATGGCGTGGATTATCTGACAGGCTCGTGGTGGCCGGTCCTGGAGGACCTGTATCGTTCTAACATCCCGGTGTACCGCTTCATTCAGAGACCCGGGGACCTGGTGTGGATCAACGCTGGCACTGTGCACTGGGTCCAGGCCGTAGGGTGGTGCAACAACATAGCCTGGAATGTGGGTCCTTTAAATGCCTATCAATACCAGCTGGCTCTTGAACGCTTTGAGTGGAACGAGATCAAGAAGGTCAAATCAATCGTCCCCATGATCCACGTGTCCTGGAACGTCGCCCGCACAATCAAAATCACAGACCCAAACACATTCAAAATGATCAAACATTGTCTCCTCCAGTCCATCAAACACATTCAGATTTTAAGGGACCAGCTGGTGTCTGCAGGGAAAAAGATCTCCTATCAGAGCAGGGTGAAGGATGAACCAGCGTACTACTGCAATGAGTGCGATctGGAGGTGTTTGACCTGCTGTTTGTGACCAGTGAGAGCGGCAGTAGAAAGACGTATGTGGTTCACTGTGAGGACTGCGCTCGGGAGCAGAGCCCCAGTCTGAGCGGGGTGGTGGTGCTGGAGCAGTACCGCATCAACGAGCTCATGAACACATATGATAACTTCACCCTGGCTCCAGTCCCGTGCTGTAGGTGAACTTGATGTCTGAAACTACACAGCCATAACCAAATCTCCACCCTCCCGCCCCAAAGCAGCGGCACAAACCTTATGttacgtttcttttttttgtttgttagtttttttgttcgttttttttttttaccaaaaccaCTACTGCAGACTTACGAAACAGCCAATCAAATCGCTGTTTACTTCACATTGTTTACAATACTATCAGCCGATGTCTCTCCAGCGCAGTCGTCTTCCCCTAAGCCAGCTACTGACGGGACATCCGATAGTTCTCACGCTCCTGAATACAGAAAGACTAGAGTGGTGCTACATCATTGGACTTGGCTATCAGGTCAATCATCCACAATGGATAACTGCTGtgattcctttttaaaaaaaaaaaaaaattgtcaactTGCCGAACATGTGCATTAATTCAGGTACTGATGTAGTTTAcgttttttatgcaaatgaaagaCGATTTCACCAGTGCAGTTTGTTTTGAGTAAGTGGTGCTTTGATACaacgtatatatatttaacagcaGGGGATTCATTTCTCTCGGAGCTGATGACCATTGCAGCGgcattacgtttttttttcattaagttgTTTCGGTCATGTCACATTTACTACAAGTCTGACCTTTGTAAATGGTATTTGCATATTTGACTGGgtgctatttttttaagttgtcaaaggttttcagaaagaaaagaaaaaaccttttttaacagTCTAGACTAACACCATTTGGGCCTTGTGGTATgcatttagaagaaaaaaaatgatttcatggtatttgattaaataaataacgacATTTTCTTAGAGCATCAAAGTATCACGTGAGGTACAGTATATGTAACAGTTATTCCAAAAAATACGGGTTTAATCTCAAACTTATTTGACTGCATTTGTCTGGAaaaccttgtgtgtgtgttacgtgAATCTTTTTGTATAACtcgaaaaaaaaacgaaaaaaaaaaattcctgcgAACTTGTGGCTTTTGATGCATTTCCCAATCTGATCGActcctttgatttttttttttttaaatcattactgAAATAGTCTTcgttggtttagtttttttaatttatttacttgtcTTTTCCTTTCGTATTTATTGATCGTTCGTGATGCTTCTCTTTTTCTGAGATTTTCATGCGTATTTTGTAATCTTTCTGTTGTGCTGATGTGGTGAGGCTTACGGGGGAACGTCTGATTCAAAATGGTGCTGATCCCCCTTCCTcccggtctctctctctctctctctctctctctgtctgtataAATGATCCGTAGGTTTGAAAACATGAATTTAATCTCACAAATTGGTGCTTAGAACAGAGTCAGTACACTTTTATGAACTGAATGTctttgtactgtatatttaacacATGAAATTTGTTTGCTTTACATGAGGTACAGGATATTGTGACACGTGTATGATTCCAGTCATCCTAGCTGTTATGATAATTATGACCTTTCTGATTTGTATCATAGATGGATTGCAGATTGAGAGTTTTCGGATTTGCGTTCCATCGATAcctcttgtttgttttcaggttcattgccatttttttgttcgttttactgtataaaaaaatcaaaaaggtaagataaaataaaaataaaaaaagaaaggaaaacattaAGGAACTGAGCCAGacttgtttaaaacattttgtgatttttgtgtgtTATACCTGATATAATtctaactataaaaaataaaacattctgatAAATCCC

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111884 lncRNA upstream 107758 7682154 ~ 7682440 (+) True G75574
TU111772 lncRNA upstream 301631 7487475 ~ 7488567 (+) True G75502
TU111794 lncRNA upstream 382077 7402133 ~ 7408121 (+) True G75516
TU111792 lncRNA upstream 390165 7399428 ~ 7400033 (+) True G75514
TU111791 lncRNA upstream 390835 7398045 ~ 7399363 (+) True G75513
TU111912 lncRNA downstream 9232 7819315 ~ 7822518 (+) False si:ch211-237l4.6
TU111922 lncRNA downstream 30515 7840598 ~ 7859712 (+) True G75591
TU111925 lncRNA downstream 35136 7845219 ~ 7849236 (+) True G75593
TU111946 lncRNA downstream 91140 7901223 ~ 7902731 (+) True G75607
TU111975 lncRNA downstream 226051 8036134 ~ 8069911 (+) True G75629
XM_043250876.1 mRNA upstream 42802 7709173 ~ 7747396 (+) True efnb3a
XM_043250314.1 mRNA upstream 81978 7695316 ~ 7708220 (+) True gigyf1b
XM_043250814.1 mRNA upstream 108454 7615404 ~ 7681744 (+) True nlgn2b
XM_043250684.1 mRNA upstream 251927 7533188 ~ 7538271 (+) True LOC122352927
XM_043250951.1 mRNA upstream 302842 7484402 ~ 7487356 (+) True npm1a
XM_043249980.1 mRNA downstream 2123 7812206 ~ 7817701 (+) True tmem88a
XM_043249958.1 mRNA downstream 7727 7817810 ~ 7822337 (+) True si:ch211-237l4.6
XM_043249932.1 mRNA downstream 56252 7866335 ~ 7871448 (+) False ap4m1
XM_043249931.1 mRNA downstream 56255 7866338 ~ 7871448 (+) True ap4m1
XM_043250066.1 mRNA downstream 62456 7872539 ~ 7880100 (+) True arrb2a
TU111766 other upstream 424867 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 532969 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 568670 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 628935 7153586 ~ 7161263 (+) False LOC122352414
XR_006252001.1 other downstream 51163 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 51510 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 51877 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 53696 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 62456 7872539 ~ 7879241 (+) False arrb2a

Expression Profile