RNA id: XM_043250352.1


Basic Information

Item Value
RNA id XM_043250352.1
length 2163
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC122352756
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14280933 ~ 14285082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATCTCAGATGTTCGTTtgtgatgaattaataaaaatatttacagtgctTTACATTGCATAGGCCAACGAATgcataaatatgtcaaaaatattCTATTCGCACATCAAAAAAACGATTCTATCGTTTATGTATACCTTAGGTAGTGTCTAGTTGAGCTAAAAAAGTTTGCAAAGCTGAACCAACAAGAAAATGTGCTAAGAACCACATCCTGTTCTCAAGAGCTGATCCATGATGCCTAGAACTGCTGTGCTTTTAGTCACGTCGAGCTCTTCTTTACTCTGTGACTCAAATCACAAATCTCAGCTTTACCCCATACTATTCACTCACTAATGtcccagatttaaaaaaaaaaaaagtgtaaagagATTAGTAGGCTAATTTTCCGTTCTTTCTCTTGCCACACCTTAGAGGATTGAGGGAAGCCACATGTCTTCTCGTGGTTTCTTTGGGTTTAGAAAAGTTTATGCGGACATTTCTACAACCATTCAATCTGCTTATTAGGTATTCATTACATCATTTAAGCTCAACATCTTATTTGACTTCTTGTGGACTGgaaaaataattatgcatttgcTTCATCATTGTACTTTGATAGAATTTAGAAacgtttattaatataaatgtttgatgTATATTGTATCTGATGTGCTTTTTATTTCGATAACCTACAAACAGCACATCATTCAAttgtattatgcaaataatgcaCACgtaaatagggggctttttgcgaAACAGATTATTCAattataaagcactttgaaCTACACACAAACCTGCAATGTTATTAAAGCACCCCCTCACTCGTTATGAGTTTAAACGAAGCCGTCGGGAAATAATAAATTCGGCTCGGAGTTTAAAAAACTGGCGTTCTCACGCACTTCCGCTGAACATCTCGCGAGATCAAGTTTCCTTGACAACAGTACACCGTGTTTTCATGGAGGCGTCTGAGCGACAAAAGATTCAACTCAGAACCAACCAGCCATACTGCACACACCATGAGGTGAATGCAGAAGAAGCGACCAGTGTGCACACACCATCCCCAAGACAGATAGtttccaGGAGGTCAGGCAGGCAGAAGCACAGCGCCATGGCCTCTTACGCTGGCGATAAACTAGAAGAGGACACTAAAGTAAAGAAAAAAGAGCCACCACTTGGTGCCCGTGCTTCTAATCAGAAcgatgaagaagatgaagaggatgatgaGGATGAGGATGATGACGAAGATGATTCTGATGACTCAGAGTCTGATGAAGAAGAAGGGGAGCCCGGATCTGCTCCAGAAGGTGCATACGACCCAGCCGATTATGAACATCTTCCTGTGACAGCGGAGATCAAAGAGCTTTTTCAGTACATCACAAGgTATACTCCACAGACGATAGAGCTTGACCACAAATTGAAGCCCTTTATCCCTGATTTCATCCCAGCTGTGGGAGACATTGATGCTTTCCTCAAAGTACCAAGGCCAGATGGGAAGGCCGACAATCTGGGTCTCCTGGTTCTGGATGAGCCGTGCAAGAAACAGTCAGACCCAACAGTGCTTTCCCTGTGGCTCTCAGAGAACAGCAAACAACACAACGTTGCCGAAGTGAAAGTAAAGAGCGTTGAAAACCCAGAGAAGAACCCGAAAGCCATAGACAGCTGGATCGAGAGCATTAGTGAGCTGCATCGGTCCAAGCCTCCAGCGACTGTACACTACACCAGACCCATGCCGGATATTGACAGCCTTATGCAAGAGTGGCCGCCTGAGTTTGAGGAGCTTTTAGGGAAGGTCAATCTTCCCACAGCAGATATTGACTGTGATTTGGCAGAGTATGTTGACATTATTTGTGGAGTCCTGGACATCCCTGTGTACAAGAATCGGATTCACTCACTTCACGTCCTGTTCACACTTTACTCCGAATTCAAAAACTCACAGCACTTTAAATCTGTAGCGGAGGGCCAGAAATCTGACACACCGCCTGCTTCGCGTACAGCCACTGCTGAATTAGAAAGACTCACTTTGGATTGAGGTCTATTTTGGCCTATTTTCTGACATCCTGTTTTGTTCTTAGCTGTTTGTCACCAGTTGTGTGAAGTTAAATTGTTTTGCGTCTTGGACTTATATGTTTGCATTTAAcagacttttaattaaaaaaatctgtagatTGAGAACTGTA

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0048264 determination of ventral identity biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19682 IFT46; intraflagellar transport protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114539 lncRNA downstream 135629 14144891 ~ 14145304 (-) True G77432
TU114469 lncRNA downstream 183798 14059439 ~ 14097135 (-) True G77390
TU114468 lncRNA downstream 183798 14076309 ~ 14097135 (-) False G77390
TU114455 lncRNA downstream 286166 13994422 ~ 13994767 (-) True G77379
TU114454 lncRNA downstream 293767 13986935 ~ 13987166 (-) True G77378
TU114587 lncRNA upstream 6771 14291853 ~ 14292718 (-) True G77456
TU114604 lncRNA upstream 76272 14361354 ~ 14361734 (-) True G77472
TU114621 lncRNA upstream 81199 14366281 ~ 14368555 (-) True G77476
TU114626 lncRNA upstream 139431 14424513 ~ 14425487 (-) True G77480
XR_006251945.1 lncRNA upstream 175286 14460368 ~ 14465320 (-) True LOC122353010
XM_043250350.1 mRNA downstream 45 14278117 ~ 14280888 (-) True LOC122352754
XM_043250351.1 mRNA downstream 3601 14273650 ~ 14277332 (-) True LOC122352755
XM_043249850.1 mRNA downstream 183798 14057089 ~ 14097135 (-) True LOC122352435
XM_043250845.1 mRNA upstream 190107 14475189 ~ 14481449 (-) False LOC122353009
XM_043250844.1 mRNA upstream 191107 14476189 ~ 14481449 (-) False LOC122353009
XM_043249856.1 mRNA upstream 199717 14484799 ~ 14485292 (-) True im:6904045
XM_043250843.1 mRNA upstream 200247 14485329 ~ 14488534 (-) False dhrs7ca
XM_043250842.1 mRNA upstream 200247 14485329 ~ 14488534 (-) True dhrs7ca
TU114559 other downstream 16611 14234506 ~ 14264322 (-) True G77443
TU114556 other downstream 72927 14204416 ~ 14208006 (-) True G77441
TU114554 other downstream 76806 14202262 ~ 14204127 (-) True G77440
TU114555 other downstream 78096 14202262 ~ 14202837 (-) False G77440
TU114409 other downstream 473293 13806119 ~ 13807640 (-) False ovca2
TU114597 other upstream 54964 14340046 ~ 14343012 (-) True G77465
XR_006251944.1 other upstream 182104 14467186 ~ 14481449 (-) False LOC122353009
TU114670 other upstream 189038 14474120 ~ 14481437 (-) True LOC122353009
TU114673 other upstream 199735 14484817 ~ 14485270 (-) False im:6904045
XR_006251888.1 other upstream 284279 14569361 ~ 14589899 (-) False vwa3a

Expression Profile