RNA id: XM_043250373.1


Basic Information

Item Value
RNA id XM_043250373.1
length 6897
RNA type mRNA
GC content 0.47
exon number 37
gene id chd1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4131742 ~ 4153288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCGCTCTCTCTGTGTGCGCGAGCGCGTCATGGCGGAGACCGGCTGGTGTAGGATTTACAGCTGAAATATGCCTGCTATCCCATCTGTTTCCCGGCACATGGAATACAAAACACTGCCTAGCGTCTAAACCCAAGGCACTTTCGACCGTGGAGGGGTAAACTTGGAAACCCATCTGTCAGAATAAAGTCTAAGTGTGTTTTCGTGGAGTTCCCGAGCGACAGCGGCTATCAGCAGAAAGAACCcaaagcggcgcagggcagaCAGgtgaGCTGCTCTGAAGTGGCGCGCACAGACTGCAAGGATCTCATCAGGGACTaatctttaatatttgattGCGATGGATGGACGCAGTGAGGATGAAAGTGTCAGCAACAGCAGCGGAGAGTCCAGTAATTCAGATGATGAGTCTGGGTCAGGATCGGGTTCGGGCTCGGGCTCGAGTTCAAGCAGTAGCAGTTCtagcagtagccaatcagggaGCAGTGACTCAGGAAGTGGCTCGGATTCTGGAAGCCAATCAGACTCTGACTCTGAGAAATCCAAGGAAAAGAATGATCAAGACAATAAAATCGATGGAGCAACGTTTTGGAAGTCCAATCCCAGTATCCTGACAGTGCAAAGGTCAGCCATGATCAGGAAACAACAGCTTCAACAGCAGCAGCTCCAGCAGCAGAGCTCCTCAAACACTGGTTCAGACGAGGACTCTTCCAGTAGTGATGAGTCAGACGATGACTCAAAGAGCAGGAGTAAAGGGTCTGGTTCTGACTCTGACTCGGGCTCTGGTTCAGGAAGTGGCTCATCTGACTCTTCagcagaggaggaagagaacaGTGACGAGTCAGTGTCAGACTATGAGCCCAGTCACAAAGTCAAGAGCAGAAAACCTTCAAACAAGGCTAATGCCAGGAATGGGAAAAATAACAAAGCTCCCAAGAAGAAGCCCTCCCGCTCCTCCTCAGATGAAGAGGATGATTATAAAAAAGCTCTAGCGGGACCTCGGCGGCAGGCCACTGTCAATGTGAGCTACAAAGAAGATGAGGAACTGAAGACTGACTCGGATGACCTGGTGGAGGTATGCGGAGAGGATGTCCCACCCCCGGAGGAGGATGAATTTGAGACACTGGAGAGAGTTATGGAAATGAGGATAGGCCGGAAAGGAGCAACTGGGGCCGTAACCACGGTGTATGCAGTAGAGGCAGATGGAGACCCCAACACCAACTTTGACCCCAACAGACAGCCAGGAGAGGTGCAATACTTGATCAAATGGAAGAATTGGTCACACATTCACAACACCTGGGAGACAGAGGAAACACTTAAACAACAGAACGTGAAGGGCATGAAGAAACTGGACAATTTCAAGAAAAAAGAGcaggagaaaaagaaatgGCTCAAATCTGCCTCGCCTGAGGATGTGGAGTACTTCAACTGTCAGCAGGAACTCATGGATGACTTGCATTCACAATATCAGCTTGTGGAAAGAATCATCGGACATTCAAATCAGAAGTCTGCCGCAGGTTATCCAGATTACCTTTGTAAATGGCAGGGGCTGCCATACTCGGAGTGCAGCTGGGAAGACGGTGGTCTTATTGCCAGAAAGTTTCAGAAGTGCATTGACGAATACATGAGTCGCAATCAGTGCAAAACCATTCCCTCAAGAGACTGCAAGgttttaaaacagAGGCCACGGTTTGTACCCATGAAGAAGCAGCCTCACTACATTGGTGCAGATGGATTGGAGCTGCGAGATTACCAGTTGGAGGGTCTGAACTGGATGGCCCATTCTTGGTGCAAAGGAAACAGTTGCATCCTGGCGGATGAGATGGGTCTGGGCAAAACCATTCAGACTATCAGCTTCCTCAATTACTTGTTCCATGAGCACCAGCTTTATGGGCCGTTCCTTCTGGTGGTGCCTTTGTCAACCCTTACATCCTGGCAAAGGGAGATACAGCTCTGGGCTCCACTGATGAATGTTGTGGTCTACCTGGGAGACATCAACAGCAGAAACAtgATCCGGACACATGAATGGATGCATCCACAGACCAAAAGGCTGAAGCTCAACGTTCTGCTTACTACATATGAAATTCTGCTTAAGGATAAGTCCTTTTTAGGAAATGTGAACTGGGCATTCATTGGCGTAGACGAGGCCCATCGGCTGAAGAATGACGACTCGCTCCTCTACAAGACTATGATCGAGTTCAAGTCCAACCACAGGCTCTTGATCACAGGCACACCCCTCCAGAACTCACTCAAAGAGCTCTGGTCTCTACTACACTTTATTATGCCTGAAAAATTTCACTCATGGGAGATATTTGAAGAGGAACATGGCAAAGGCAGGGACTCTGGTTATACCAGCCTTCATAAGGAGCTGGAGCCCTTCCTGCTGCGCAGAGTAAAGAAGGATGTGGAGAAGTCTCTACCTGCCAAGGTGGAGCAGATCCTCAGGGTGGAGATGAGCGCTGTTCAGAAACAGTACTACAAgtGGATCTTGACGAGAAACTATAAAGCCCTGAGTAAAGGCACTAAAGGAAGCAAGTCAGGCTTCCTCAACATCATGATGGAGTTGAAGAAATGCTGTAACCACTGCTACCTCATTAAATCACCTGAGGATAACGAGTTCTACAACAGACAAGAAGGCCTACAGCATCTTATACGCAGCAGTGGGAAGCTGATTCTTCTGGATAAACTGCTGGTTCGGCTGAAGGAACGAGGGCACCGTGTGCTCATCTTTTCTCAGATGGTTCGAATGCTGGACATTCTAGCAGAGTACCTGAAGTACCGGCAGTTCTTATTCCAGAGACTGGATGGCTCCATAAAGGGTGAGATGAGGAAGCAGGCATTAGATCATTTCAATGCAGAGGGCTCTGAGGATTTCTGCTTCCTGTTGTCCACGCGAGCAGGTGGTCTGGGCATTAACCTGGCTTCTGCAGATACAGTGGTCATTTTTGACTCTGACTGGAACCCTCAAAATGACCTGCAGGCCCAAGCCAGAGCGCACAGGATTGGTCAGAAAAAACAGGTGAATATATACCGTCTGGTGACGAAGGGCTCGGTAGAGGAGGATATTATAGAGAGAGCCAAGAAGAAAATGGTGTTGGACCACCTAGTTATTCAGAGAATGGACACCACGGGAAAAACTGTCCTTCACACGGGTGCTGCTCCTTCAAGtTCCACTCCATTCAACAAGGAGGAACTGTCAGCCATCCTGAAGTTTGGTGCTGAGGAACTTTTCAAAGAGCCGGAGGGAGAGGAGCAGGAACCTCAGGAGATGGACATTGATGAAATCCTGAAGCGAGCAGAAACCAGAGAAAATGACCCTGGACCATCAACTGTAGGAGAGGAGCTTCTGTCACAGTTTAAGGTAGCAAATTTCTCCATGATGGAGGATGAGGAGATTGACATGGACACAGAGAGGGATGGTAGGAACTGGGATGACATTATCCCAGAGGAGCAGCGGAGGAGACTCGAGGAAGAGGAGCGACAAAAAGAGCTAGCAGAGATCTATTTACTGCCCCGCATGAGGAAGTGTGCTAAACAGATAAACTTTAATGGAAATGAGGGCAGGCGCAGCCGGAACAGACGATACTCTGGTTCAGACAGCGATTCTGTCTCCGACAGAAAGAGGCCCAAGAAACGAGGAAGACCTCGAACTATTCCAAGAGAGAACATTAAGGGTTTCACTGATGCAGAGATACGCAGgtttattaaaagttataaaaagtTCGGTGGCCCTTTAGAAAGGCTTGACGCTATCGCTCGCGATGCTGAGCTGGTGGACAAATCAGAGCATGACCTGCGACGACTGGCTGAGACTGTACACAATGGCTGTTTGAAAACGCTAAGGGAGAACCCCTGTGGACCCGAACGAACCTCAGGAGGCAGGCGAGGGAAGGTGAAGGGACCCACCTTCAGGATCTCAGGGGTTCAGGTCAATGCTAAGCTAGTGATCTCTCATGAGGAGGAGCTGGCACCATTACACAAGGCCATTCCCGCTGACCCTGAGGAGAGGAAAAGgTATATAATCCCATGCCACTCAAAGGCAGCTCATTTTGACATTGAGTGGGGTAAAGAGGATGACTCCAGCCTGCTTATTGGAATTTATGAGTACGGTTATGGCAGCTGGGAGATGATCAAAATGGATCCAGACCTAAATCTCACACACAAGCTCCTTCCAGATGACCCTGACAAGAAGCCACAGGCCAAGCAGTTGCAGACACGAGCTGACTACCTCATCAAATTACTGAGCAAAGACCTTGCTAAGAAGGAAGCACAGAAACAGGCCGGCACAGCAAATTCACGCAAGAGAAAACCACGAGGCAAGAAGAACAAAGCTGTAAAAACCAAGATGGATGACGTGACAAACAGTCTGTCCTCTGCACCACCATCAGATAAGAGCTCTGAAGAAGAGGATGAgaaggaggaagaagaaaagGAAACTCCTCCAGCTAAGCCAGCCAACAGAAGAGCACGTGTATCAGAGCGGCCGgtaaaggaggaggaggacgaagatgaggatgaagagTCTGATGAGGACGAGCTTGAGGACAAAGAGCCCGAAGAGAAGGACATAATGGAGAAAGTGGTCAAAAAAGAAATCaagaaggagaagaaagagGAGGGTCGGGACAGCAAAGAGAGGGAACCAAAAGAGGAGATGAAGTCAGAGCCTGAAGAAGAGACCCCTGCAGAGAAGGCTGTAGAGGTGAAAGCAGAAGTACGGGAGAAGAAAGCTGATACCCCTGTGCACACGCCCTCGGGAGGAGATGCGATTCCCTTGTCTGAGGAGTCTGAAGAACTGGACCAAAAAACCTTCagtgtgTGTAAGGAGCGCATGCGGCCAGTGAAGGCAGCACTCAAGCAGCTGGATCGTCCAGAGAAGGGTCTGTCTGAACGTGAACAGCTGGAGCACACTCGCCAATGCCTGATCAAAATAGGGGATCACATCACGGAGTGTCTGAGAGAATACACCAACCCTGAACAGATCAAACAGTGGAGGAAAAATCTGTGGATTTTTGTTTCGAAATTCACTGAATTTGATGCAAGAAAACTGCATAAACTCTATAAACATGCCATCaagaaaagacaagaaaatGCTCAGGCAGTGGAGCAGAACACAAGCGCTGTAAATACACAAAGCTTTAAACATGCAGATGTTGAGCGGATGAAGGAATCGCAGCAGGACGACAGCAGCCGAGACAGCTACAGCTCTGATAGACATCATTCATCTCGCTATCATGAGCATAGTAAAGATCGGCACACTGGCGACTCGTACAGGAAGAGCTCCGATTCCAGGAAGAGACCTTACTCCTCCTTCAGCAATGGCAAAGAccacagagagcgagagagagaccagtacagagagagaggagagcgaCAGGACAGCAGATACTACAGCGACAGCAAGCACAGGAAGCTGGACGAGCACCGCTCCAGCAGAGAGCACCGATCAGAAAGCAACTCCAAGGACAGGACTCACTCCGAACACCGCTTCCACTCTGAGCACCGCTCTGCCTCTGACTACACGCATCACAAATCGTCCCGGGACTACCGCTACCATTCGGACTGGCAGCTGGAGCACCGGCCACGCTCGCCGTACGACTCCCGCTCGCCGCTGGGCCACCGCTCGCCCTTCGAATactcgtctgaccacagaagCACACCCGAACAGGTTTGGAGCGGCCGCAAGACATAAAGCTCTCCGCTCCGCTCGCTTCTAATTAGCCAtagacacacaacacacaggAAATGCCTTAGGGGACTGTCGGCCGCTGCACTGGGGCTCTGGGAGTGCCACCCTTTCCTACTCACCTCGGAGGAAACACAGATCacgtatttttgtatttaagagTTAGCTGCATTCTTTCGTAGGTGCTgcagagtaatttttttttaattattatttttataaattgactactttcctcttttgtttttgtttcgtttcgtttgttttttggtttcttttttttttacttggaaaCTGATGAATCCATGTTTCACTGTCACGTGCGACACTGGATCCAGACATACAGCCGTAAATAAACACGACGCAGCTTATTTAAGGAGTGTTGAGTGAAAAGGACGCTACAAACGTGTGTCGTCTTTATCCGCTAGAGGACCTGAGGGGTTTCTGTTCTGAAGGACTGGGGTTCACCTTCCAAAGTACCTCGTTTACAGTGTTTTGTGACCATTTTTGCCAATTTTTATCTGTAATTTTTCTTTCCATCAtgcttgaattatttaaatctgtCTCGGCTGTAAAATAATCTGGACTATTTTTAGCGCGCATCAGATAATGTCACTTTTTCACATTGTACTACTGTAAATTATTGTATAAAGTAAATCAAATGGGCTTTTCTCAGGCtggtatttttttaactatttccCCATCAACTCAGGctattttctctcctttttttgttttgacgtTTCTTAATCTCAGTAGTTTTGAATCATGGAATGGGGTAAATATTCCAACGTGTATTTGTTCTGTAGGATCGTTTGGTTTGTTGTTGATCTTTGGTTTTTCTCTATTTGTAAGTGAATTGGCCTCGCTTTATAACAGCATCATGTCAAAAAATAcaaactgtgtaaaaaaaaaaagggcatgAAAAGGTCGATCGTAGCTAGAGGCACTTATGAGCTCTCCTTAGAACATTTCCATGATAATCTTTCCTCTTGTTTTCTATAAATGTTGGCaataatgtaattttctatGCAGCCCGAGTGTTTTTCTGGTGACTGGCCCTAGTAAGTCAGAATGCTGTTACAGGACATACTGATGTATATAGATTTCCTTCTATATTTCAAATCCAAATTTACActgaaaatgcatgaatttttaaagtaattgttttatataattgtttataaagTCATTAAACTCAAATCACTGTT

Function

GO: NA

KEGG:

id description
K11367 CHD1; chromodomain-helicase-DNA-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110601 lncRNA downstream 298 4130565 ~ 4131444 (-) True G74755
TU110602 lncRNA downstream 298 4130565 ~ 4131444 (-) False G74755
TU110605 lncRNA downstream 1731 4126895 ~ 4130011 (-) True G74757
TU110583 lncRNA downstream 122368 4007230 ~ 4009374 (-) True G74737
TU110588 lncRNA downstream 131955 3997901 ~ 3999787 (-) True G74742
TU110679 lncRNA upstream 145448 4298736 ~ 4323950 (-) True G74791
TU110687 lncRNA upstream 210116 4363404 ~ 4364758 (-) True G74796
TU110610 lncRNA upstream 341772 4495060 ~ 4496658 (-) True G74762
TU110694 lncRNA upstream 357258 4510546 ~ 4510942 (-) True G74803
TU110726 lncRNA upstream 526415 4679703 ~ 4680232 (-) True G74819
XM_043250417.1 mRNA downstream 5210 4119378 ~ 4126532 (-) True dcp2
XM_043250416.1 mRNA downstream 15966 4106008 ~ 4115776 (-) True ca9
XM_043250328.1 mRNA downstream 219000 3905614 ~ 3912742 (-) True LOC122352741
XM_043250920.1 mRNA downstream 227619 3891642 ~ 3904123 (-) True pdzph1
XM_043250200.1 mRNA downstream 255188 3843692 ~ 3876554 (-) False pam
XM_043250428.1 mRNA upstream 2116 4155404 ~ 4164114 (-) True macir
XM_043250429.1 mRNA upstream 2116 4155404 ~ 4164095 (-) False macir
XM_043250376.1 mRNA upstream 13734 4167022 ~ 4201387 (-) False ppip5k2
XM_043250383.1 mRNA upstream 13734 4167022 ~ 4201386 (-) False ppip5k2
XM_043250382.1 mRNA upstream 13734 4167022 ~ 4201386 (-) False ppip5k2
XR_006251921.1 other downstream 219000 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 219000 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 523954 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 791813 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1934431 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2385246 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2475137 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2475142 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 3024036 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 3024463 7177751 ~ 7180821 (-) True G75454

Expression Profile