RNA id: XM_043250383.1


Basic Information

Item Value
RNA id XM_043250383.1
length 4689
RNA type mRNA
GC content 0.47
exon number 32
gene id ppip5k2
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4167022 ~ 4201388 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gactggtgtttttttttttatttttaaagcctgAACTTGAGTACGTTCGTGCAGGAGTCATACAGATGGATGTAATACACCATTGGTGGAAAATCGCAGAGGCCTGCAGAAGATCAGAATGAGATTATTCGTGTTTGTGCCCGTTAGCTgaaggaggatgatgatgatttttGCTGTTGGTGCTTTTAGCATATGTGCTAACGTTAGCTCTCCTCATTCagtatttctgtgtttgtgaacagcTAACATAGCAGCCCACGGCTCTCTACTTCACTTCCGGCTCTTTCAAAGCAGgATAATAGGATCTCTGAATTTGTGGTCGTCTAGGGATTATTCTGACACATCTGAAAGAGACGTAAAGATGAGTGGCTGCGACGAGCAGGAAGAAGCCTGTAAGGCTGGTTGTTACCAGCTCTAATCTTCATATGAACCTCTGCTGAACCACTGACAGCTGTCTCGGGTGAATATGTCTGTGCACGAGGACTTGGATCACCCGCGCTTTTTTGTGGGAGCTGATGATGGCGAGGGAGACGAGCTGCTGGATCCAGGCAGAGTGCTCGGTTATGACTGCCTGTACGAACATgtggaagaggaggatgaagacaGAGATGACGCCGAATATGATTCGCCTCCCGAGAGACAGATTGTGGTGGGTATCTGTGCCATGTCTAAGAAGTCAAAGTCCAAACCTATGAAGGAGATCCTGGAGAGACTTTGTCTGTTTAAATACATCACTGTGGTTACGTTTGAAGAGGAAGTCATTTTGAATGAGCCGGTGGAAAACTGGCCACTCTGCGATTGTCTCATCTCTTTCCATTCCAAAGgattccCGCTAGATAAAGCTGTAGCTTATAAGAAGCTGAGGAATCCATTTGTCATCAATGATCTGGACCTTCAGTATTTTATTCAGGACAGgAGAGAGGTGTATCGGATACTGAAGGCTGAGGGAATACAGCTTCCCCGCTTTGCGGTTCTGAACCGGGATCCTGCCAGGCCAGAAGAGTGTAATCTGGTGGAGGGAGAGGACCATGTGGAGGTGAACGGGGAGATTTTCCAGAAGCCTTTTGTAGAGAAGCCAGTGAGTGCCGAGGACCACAATGTCTACATCTATTACCCCACATCCGCAGGAGGGGGAAGTCAGAGGCTCTTCCGCAAGATTGGCAGCAGAAGTAGCGTCTATTCTCCTGAGAGTAACGTCAGGAAGACTGGATCCTACATATACGAGGAGTTCATGCCTACAGATGGAACTGATGTGAAGGTGTACACTGTAGGTCCAGACTATGCCCATGCAGAGGCTCGTAAGTCTCCCGCTCTGGATGGTAAGGTGGAACGAGACAGCGAGGGGAAAGAGGTCCGTTATCCAGTCATTCTCAATGCCAGAGAGAAACTCATCGCTTGGAAAGTCTGTCTGGCTTTCAAGcaAACTGTGTGTGGGTTCGATCTGCTTCGTGCCAATGGCCAGTCATACGTCTGTGACGTCAATGGCTTCAGCTTTGTCAAGAACTCCATGAAATACTATGATGACTGTGCAAAAATCCTGGGAAATATCATCATGAGAGAACTGGCTCCACAGTTTCAGATCCCGTGGTCAATCCCTTTAGAAGCAGAGGACATTCCCATAGTTCCTACAACCTCTGGAACTATGATGGAGTTGAGGTGTGTGATTGCTGTGATTCGACATGGCGACAGAACTCCCAAACAGAAGATGAAAATGGAAGTTCGACATCAGCGgttttttgaCCTCTTTGAAAAATGCGAAGGTTACAAAAGTGgaaaactgaaattgaaaaaacCAAAGCAACTCCAAGAGGTTTTGGACATTGCCAGGCAGCTTTTGGTAGAACTTGGACAAAATAATGATTCGGAAATTGAAGAGAGCAAAGCAAAGCTTGAACAGCTAAAAACCGTCCTTGAAATGTACGGTCATTTCTCTGGCATTAATCGCAAGGTTCAGTTAACATATCTGCCACATGGCTGCCCTAAAACATCCAGCGAAGAGGAAGatGTGCGGAGGGATGACCCGTCACTCTTGCTGGTTTTGAAGTGGGGTGGAGAGCTGACTCCAGCTGGCAGGGTACAGGCGGAAGAACTTGGCCGAGCCTTCAGGTGTATGTACCCTGGAGGACAAGGTGATTACGCTGGCTTTCCCGGCTGTGGCCTTCTCCGTCTGCACAGCACATACCGACATGACCTGAAGATATATGCCTCTGATGAAGGACGCGTTCAGATGACTGCTGCAGCATTTGCTAAAGGCTTGCTGGCATTAGAGGGCGAGCTGACGCCGATCCTGGTGCAGATGGTAAAGAGTGCAAATATGAATGGGCTGCTGGACAGTGACAGTGACTCCTTAAGCAGCTGCCAGCAGAAAGTCAAAGCACGACTTCATGACATTCTGCAGAAGGACAGAGACTTCACGCCAGAAGACTACGAAAAGCTGGCGCCCACCTCCAGCACATCCCTGGTAAAGTCCATGCAGATGATTAAAAACCCTGTGAAGACGTGTGATAAGGTGTACTCGCTCATCCAGAACCTGACACTGCAAATCCGCCAGAGAATGGAAGACCCCAAATCGGCAGATATCCAGCTGTACCACAGTGAGACTCTAGAACTGATGCTGCGTCGGTGGTCTAAACTCGAGAAGGATTTCAAGATGAAGAATGGCCGGTACAACATCAGCAAGATACCCGATATCTATGACTGCATCAAATATGACGTGCAGCACAACAGCTCGTTGAAGCTGGACAACACCATGGAAATTTACCGGCTTTCTAAAGCACTGGCCGACATCGTCATCCCACagGAATATGGTATTTCCCAAGCAGAGAAACTGGACATAGCCAAAGGTTACTGTACGCCTCTAATTCGCAAGATTCGCTCTGATCTACAAAGGACACAAGACGATGACACCGTTAATAAACTGCACCCAGTATATTCCAGAGGAGTCATGTCTCCAGAACGGCATGTGCGGACCAGACTTTACTTCACCAGTGAGAGTCACGTTCACTCTCTGCTGTCTATCTTGCGTTATGGAGCCCTCTGTGATGAGGCCAGAGATGAGCAGTGGAAGAGAGCCATGGACTACCTCAAAATAGTCAGCGAGCTGAACTACATGACGCAGATAGTCATCATGCTTTATGAAGACCCAAACAAGGATCCTTCATCAGAGGATCGTTTCCATGTAGAGCTTCATTTCAGTCCAGGAGCTAAAGGCTGTGAAGAAGATAAAAACCTGCCATCTGGATTTGGATATAGACCAGCATCCAGAGAGAATGAAGGCTCTAAGAAGAAATCCCACAATGATAGTGATGAGGAGGCTGGTGGTGTTAAACGTGATGAGCCGGATAGAGCTCTCATGATGTTCCGTCCCATGGTGTCAGATCCCATCTACATCCACAGGAAGTCCCCTCTTCCCCGCTCCAAAAAGATCGGCTCTGTGGAAGTTCTGTCAGAGAACAACAGCCACAGCAGACCCAGCAGACTGCACCCGGATCACAAGCTCACCCCTGGAATAGGGTCTCATTGTGCTGGCTTGTTTAGCACCATGGTGCTGGGCGGCTCCTCCAGTGCACCTAACCTACAAGATTACGCTCACGCACACCGTAAAAAGCTGACCTCCTCTGGCTTCTTAGATGagGCTACACGTGGTTCTGCTGTAAAAAGGTTTTCTATCTCATTTGCGCGACACCCAACCAATgTGTTTTCCAGTATGTTCAGTGGTTTTGAGTTGTACTCCATGGTTCCTTCCATCTGTCCCTTGGAGACCCTCCATAATTCCCTGTCTCTCAAACAAGTGGATGACTTCCTTGCCTCCATAGCCATATCTCACGATCCAGTACTGGAAATATCTGCATCCTCCCCAGCTGTGACGGCAAAGAAGGCTCCTTTGAACACTTACACTCCAGCAAAGGTCTTGCCCTGTCCGTTTACACAGTCTCTTGGAAAGAAGGCGTACTCACCAGAGAAGAGTGCCTCAGATCAAGTTCATTTTCCAGCAAGGAAACCCAGAGGCGTTTCGGCAGATATTTCGGAGCATGGCGCGAGTAGCGGGAAAACCTCAAGGCCGAGCTCGGAGACCAAACAGCCCAAGCCTGCTCCCAACATTCCCATCCTTCTGCCGCCTGAATCTCATGACTCTGCTGTTAAAACCCAGCAACGATCCAGTGGCACGGCAACACATGAAACACCCGCTCTAGAAAACAAGAGTGTTACAAAAACTGTGTCAGGCTTTCACACATGACACCCAACAATGGCAAAAACATGTCTCATGTTTGATACCAAAACACAGTCCACCAAAAGATAGCGTATTGTTGTAATTACAATCATATCGTAGGCTTACATAGCTTTTCCATTCACCTTGAATGGTTCAGAAGAATGTTACGTTTATCTTgtatatttgaatgttaaaatgtaaaagctcGCGTAGAATTACTTGTCATAGTATGACATGCTGCTGCAGCTGCTTTTAATTCTTTTGgaatatttaatgaatgcagCACTTTCTGGGGCCTCACCAAACAAGGTCCACAGTGATATTTTCTTGTTtagaatcatatttttaatgcgTAGATTTGATCACAATCGGACTGTGCACTTCTTTCCCTCCACTGCAGCTGACATCTGCCTTATGTTAACAAGTACTTTTCCatcaaactaaaattaaacatgaatgttGTGTAAATTGGGAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110601 lncRNA downstream 35578 4130565 ~ 4131444 (-) True G74755
TU110602 lncRNA downstream 35578 4130565 ~ 4131444 (-) False G74755
TU110605 lncRNA downstream 37011 4126895 ~ 4130011 (-) True G74757
TU110583 lncRNA downstream 157648 4007230 ~ 4009374 (-) True G74737
TU110588 lncRNA downstream 167235 3997901 ~ 3999787 (-) True G74742
TU110679 lncRNA upstream 97350 4298736 ~ 4323950 (-) True G74791
TU110687 lncRNA upstream 162018 4363404 ~ 4364758 (-) True G74796
TU110610 lncRNA upstream 293674 4495060 ~ 4496658 (-) True G74762
TU110694 lncRNA upstream 309160 4510546 ~ 4510942 (-) True G74803
TU110726 lncRNA upstream 478317 4679703 ~ 4680232 (-) True G74819
XM_043250428.1 mRNA downstream 2908 4155404 ~ 4164114 (-) True macir
XM_043250429.1 mRNA downstream 2927 4155404 ~ 4164095 (-) False macir
XM_043250373.1 mRNA downstream 13734 4131742 ~ 4153288 (-) True chd1
XM_043250417.1 mRNA downstream 40490 4119378 ~ 4126532 (-) True dcp2
XM_043250416.1 mRNA downstream 51246 4106008 ~ 4115776 (-) True ca9
XM_043250414.1 mRNA upstream 39915 4241301 ~ 4249943 (-) True sh2d4a
XM_043250415.1 mRNA upstream 39915 4241301 ~ 4249007 (-) False sh2d4a
XM_043250400.1 mRNA upstream 157274 4358660 ~ 4407937 (-) False nrg1
XM_043250401.1 mRNA upstream 157274 4358660 ~ 4407937 (-) False nrg1
XM_043250394.1 mRNA upstream 157274 4358660 ~ 4390748 (-) True nrg1
XR_006251921.1 other downstream 254280 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 254280 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 559234 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 827093 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1969711 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2337148 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2427039 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2427044 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2975938 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2976365 7177751 ~ 7180821 (-) True G75454

Expression Profile