RNA id: XM_043250429.1


Basic Information

Item Value
RNA id XM_043250429.1
length 5033
RNA type mRNA
GC content 0.42
exon number 2
gene id macir
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4155404 ~ 4164114 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGCGTCACGTGACTGCATCCGAGGCGTCCGCGGCTCGCGTCACGTGACTGGCGTCGACGGCAGACTCCTCTGACAGGATCTCGTCTATGGTTTTCTCAAGCCCAGccAGGTCATGTCATTAAAGATGGAAATGGATGCCAGTGGAGTGTCCAGGGCGCCCATATCCGTTCTGCCTGCTGCTGAGGTCAAAGCCACCCTGAAGCCAGAAGCCGATAAACCCCGGTGCTCCAGCACTCCCTGCTCCCCCATTAAAAGTACTGTCTCAGGATACCAGATCCTCCACATGAACTCCAACTATCTCGTGGGCTTCACCACCGGTGAGGAGCTTCTCAAATTAGCCCAGAAATGGTCCAGCCCTGACAACAGCAACACAGAGGCCTTGCCCAGCCCTATCAAAAAGCCTGTGGATTTAAGCCTGCACCGAGCCTCGCGGATTTACAAAGCCAAAAGCCGTTACTACCAACCGTACGACATCCCAGCCATCAACGGACGCCGGAGGAGGCGCATGCCCAGCTCCGGTGACGGCTGCTTGAAGTCGATGGTGAGCGGGGAGCCCAGCAAGGCCTTACACGGGCCCCTGCCCCTCTGCCTGTTGAAGGGCAAACGAGTGTACTCCAAATCCCTGGACTACCTCAACCTGGACAAGATGAGCCTCAGGGAGCCGGCGGACACTGAAGTGCTGCAGTACCAGCTACAGCATCTCAATCTGAGGGGCGAGCGCATGTTCACCCGCAACAAGACATGAGTTCTCAGAAATGTCCACCTGCCCACAGTCGTCTGTCTGTGATGTAGGGCCTCGGTTTTTACCACTCCGATTATAGGCAGTTCGCTACTAATACAGGGTGACCGTACGTGCCATTTTTCCTGGACGGTCCTGgcccagattttttttattggcattgTTCGTACTTGCTGAAGGTAATGATCAAAAAGTAGTTTGACCAATACCACGGAAGCATTGCATGTACTGGACCAATCGTGACGTGCGCAAAAAGATGAAATCTACAGAGAACAATCAAAGTGATGCAAATACGCCGATATTACGTGAGTTTGACTTAAAGGGATTGCTGCTCAGACCGATCAGTTTTGACAATAAAGTACCTCTAGTGGTTCGAAAGCATTTATGGTCGTTTAATGTCTTGTACTAATTGGTCTGCAcatgcaaacaaagccaaaacctaaatattgtaggcaatatagaaatcctacCCTGGACGTATTCAAGAAAAATGGCACATATGGTCACCATAGCTAAAGCCCAAAGTATACTTCACCAGAATAGTACCCCCCGTACTGTATGCCAACCgccatatttttctttgcaggTGCAAGTCGTGCATACGCACTGATTAAGTTTTGCACTAATCAGTTGTTCCACAAGGAAAGATGGCGCACTATCAAATGGAGTACACTTTGAAAAAGCTGCGCCTCACGctgtacatgcacacatacaaaagTAAAGTACACTTTGGGCTTTAGGCATCCATAGACCACTGATCTCAAGGTGTGACAAAGCGCCATGAGGTCCAGTTAGAGGAAACTTAAGTAGTAGTTTGTTCAAAAAGACAAATTCTGTCATTCGTCACTCACCCTCGTGTTTGTTCCTGACTTTTTGAATTTTGGAGAAACGTTTCGCAGCTCTtgatttactaaacagggcgAATTACCGCTAGATGGTTGTCATCCCGTAAAAGCACAGACGGGAGCGGAAGTTTCTGTGGTTGATCTGCTGACAAAGCGCACGTTAAAAAACACAGCCACGACTAATTTTCACAATGAGCAATGCAGTCCGTCAAGAGCAGCTCAGAGGAGCAAACCTTACAGCCACGCCAAGGGCAAATGGCTCAAGACGTGCTCTCTTGTGAATCGACAACTGCagtctgtttattaaaatacttataAATATTGCGTCCGAAAGGGGAAACTCCTACGAATGCATATGCGGTAAGGTCAGCCACCAAACTAATTTAGTCCATGCCTTTTCTGGGTATCTTTACTTTATCCTGCCATTAGGTGTGCCAAAAGAAGGTTTGCTTTGGCATAAATCTGGTCTAAAGCTTGCGGAAGCCATGGAACTTAGCAGGAACTGGCTAAAAATTGTTGCGGATGATCAtctaaaatgtaactttattttCAGTCCGTCGAGACTTAAGCATCTCTTAACTTTGATCCTGAGATTAAAAGCAGATTTAAGAGTAAAAGCACCAGTAATTGAATTCACTTTATGAACTTATTGGAAACTGACCGTATGAAAAAGACTGCATCGAGAAACGTTCAAAATTCTTCTTTTTCAGTTTGCGAgaacctgagggtgagtaaataatgacgtGATTGCTATACCTTTATCCACACAACAAGTCATTGTGAAAGTGTACGTTACAGGGGATTCGTTCACCGTGAGGTTTTTCAGGATTAGCAATAAATGGCGTGGCTTAATAGCTGAATTCCTACTGTTATTTGTGAGTTGGTGAGCGTGTGCAAAACACTTCAACGGCTGCGCTGCATTTAATCTCCTGTTCTCCCCTAACATCCGATCACGCGCTTGTGTTATAACTTTAGTAACTCGTGTCAGGTGAGGATCTCGACTGTTACGCAATCCGGATGATGTTTGACGCAGACCCCGATAGGCTTTTTTTTGCGGGAGAGGCTTATCTCCGAGAACCCGAACTAACGTTAGCGTAGAGAAACCATTAATGGCCTTTTCATTTCTCTAATCGACGTTTTACAGGAGGCTCGCCGGGTCGTTTTAAATTTACGTTGAAGCATTTTCTGGATGAAATCTTTACGTTAATGAAAGGTTGTGGCGTTTGCTTTGTCCATCCCCCTTCACAGTGCACACAGTTGACAACACTGCTATAAAAACCAAAGTCCAGGGGAACTTGATGAATCATTTTTGAACAGCAGACAATCTTTCACGGTTTTACGCGATAAGCACTAATGACCGTTTATGGgattttatttgtctttatttaatatgtgaCAGCGTTCCATCATCATTGAAGATATTTGTTCTAACCCTTTGCCATCGTGACTCTTTGAGATCTTCGTAGATGTTCCTCTTATATTTCATGCTTTTCAAAACTCCTTTTTATAACTGTTTAGTTGAACCCCTcgtgcatcttttttttcccttctatATCTTCCTCCcgtaattttgaaaatgaattgttAGATTTCACCCTTACTATAACCGACTTCATCATTTTgtttctaatctaatctaatctaatcttgTCGAACTTccgtgttattttaatgttcaacCGCCGATGATTAGGTgactgaaacattaaaataccatATAGGCATATGCTCTAAAAAGCACCTTAGGTTCATTCGtttgacatatttattaattgtgaaGTGTTGGTgatgttttattacagtatttccaaagtttttaatattggatttttaatttcatttcctAACTACACAGTCTTCACGTTCACGTGGTTAGAAATTCGTCGGACCACTTTTAAAGGAACAACTAGTAACGTTATTGAAACggtgtgatttattatttatcttcaCAGCGATGAATACAACGCTTAAACCCGAAGCGAATGAGATCAAGTGTATTCAGAAATGAACGAACAGTCCTCAAGCATCGAGGAATCGGCTCACTGGTCAGACGACCGTCGGCCATTTCATCTAAAGGCACGTTCAGTCAAGTCCAAATGAGCAAAAAGCAAGCCGGTTTGCTGTCCTGAATCGAACGAGTTTGGAATAAAAGCTGTAAGGAGTTGCTACTTCTCGTGTTTGGGCTATCTATGCCATTAACCGAGTTTTAGGGAcgggttttgttttgttgtattttttttttacatcgtCGTGAAATAGCTAAATTCTGGCCGTGAGATATACCGCGATATTTCAGAGCTAATAAGGGTAAAACGTAAAAGCTTGAAGACCTGTCGCGCGCTGAAACCGTTGTATACTCTATTCATCATGATGATAGTCGTCGTTTAAAAACTCCTGCCTAGAAGGATACGACCTCATTTTAATctcttaatgaataaaaatgcgtTAGAAACCAGTACTGGCTGCAGTGCCTTCGGTAAGACGTACATTCAGAAGGCATGTCTTAGTTCATTTTAGAATACTTGAATGCACATGTAATATTGTTCGGTTATCCTCCGTTCTCGGcatttttaatgcttctttTACCCACTGCAGTGTCAAagtttaacttttgtttttgtcgGAGTTTGAGTTTcatttgatattaataaaacactgttCTTTGCATTGTGTATTTCTTGCGTCGTGTTGCCAGGAAATGAGTggcgagtgagtgagtgaatgaatgaatgttgcGTATCTTAAATGCGATCTAAAGTCGCTTTGGAGAAACAGTGTTGTGTTAATGCAGTAAGCATCTGAAACACGGGCTTTTCTGCGTTCTTGTTAAAACCGTGCGCGAATGCCCTCCAATATGCGTTCATTAAAGAATTGGCTAAGTGTGTTTTCGGAAAGGCCACAAGAGGGCCTCAGCAAGGCAGGGGGGCAAAAGTGTCAATTTATCTAAAggtaaaatgtcaaaacaattaCTTTAATTATCTGAAAGTATGCGGTCTGCTGCTGGGCTAAAGGACAATAACTGACCTGATAATGAATAATGATAATTCTCCATTTGTTGACATAACATGGTTAGATGCAGATGCTTAAAACCATGTCTTAACTCGGGTCAcaagtgtatttattaaatatatatatatatatatatatatatatatgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcattttaaacaaGTGTTATCtttgatattattaaaaacattttactttagcTGAAGTATTTTTATCAGTGCCTTTTGTCACTGGCAAAACATGTTTCTTGATCACCACATCatctatttatttgtaaaaagaaaaaaaaccctctaatGATTTTCCATCCACAAAATGTATAGCtccattaatgttaaaatgtttattctgcAATCCTTCGTTATGGTATTATTAAACAGGATGGTTTCCATTTGG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0035869 ciliary transition zone cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110601 lncRNA downstream 23960 4130565 ~ 4131444 (-) True G74755
TU110602 lncRNA downstream 23960 4130565 ~ 4131444 (-) False G74755
TU110605 lncRNA downstream 25393 4126895 ~ 4130011 (-) True G74757
TU110583 lncRNA downstream 146030 4007230 ~ 4009374 (-) True G74737
TU110588 lncRNA downstream 155617 3997901 ~ 3999787 (-) True G74742
TU110679 lncRNA upstream 134641 4298736 ~ 4323950 (-) True G74791
TU110687 lncRNA upstream 199309 4363404 ~ 4364758 (-) True G74796
TU110610 lncRNA upstream 330965 4495060 ~ 4496658 (-) True G74762
TU110694 lncRNA upstream 346451 4510546 ~ 4510942 (-) True G74803
TU110726 lncRNA upstream 515608 4679703 ~ 4680232 (-) True G74819
XM_043250373.1 mRNA downstream 2116 4131742 ~ 4153288 (-) True chd1
XM_043250417.1 mRNA downstream 28872 4119378 ~ 4126532 (-) True dcp2
XM_043250416.1 mRNA downstream 39628 4106008 ~ 4115776 (-) True ca9
XM_043250328.1 mRNA downstream 242662 3905614 ~ 3912742 (-) True LOC122352741
XM_043250920.1 mRNA downstream 251281 3891642 ~ 3904123 (-) True pdzph1
XM_043250376.1 mRNA upstream 2927 4167022 ~ 4201387 (-) False ppip5k2
XM_043250383.1 mRNA upstream 2927 4167022 ~ 4201386 (-) False ppip5k2
XM_043250382.1 mRNA upstream 2927 4167022 ~ 4201386 (-) False ppip5k2
XM_043250379.1 mRNA upstream 2927 4167022 ~ 4201386 (-) False ppip5k2
XM_043250378.1 mRNA upstream 2927 4167022 ~ 4201386 (-) False ppip5k2
XR_006251921.1 other downstream 242662 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 242662 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 547616 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 815475 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1958093 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2374439 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2464330 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2464335 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 3013229 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 3013656 7177751 ~ 7180821 (-) True G75454

Expression Profile