RNA id: XM_043250433.1


Basic Information

Item Value
RNA id XM_043250433.1
length 3615
RNA type mRNA
GC content 0.45
exon number 5
gene id rab11fip1b
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15994912 ~ 16009528 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGGCTTTCGAGTGACGCTCACTTGTTGCTTCATTGGATTAGGTGAAACTTTTCCAGCGAAACGTTAACGGACCTTTGACACGTTGAAACTTCTCTCCGGGCAGGACACCTCGCGCGTCCTGCTGACTTTTCGCTCCCAGCTGAGACGGGTTGGGGCTTTCACAGAAATGTCACTGGCGGAGCAAAGCCAGCAGTGGTTTCCCACCAGCGTCCAGGTAACGGTGCTCCAGGCGAGGGGTTTGCGGAGCAAGGGGAAGAATGGCACCAACGACGCGTACGCCGTCATGCAGGTGGCCAAGGATAAGTTCTCCACCTCGGTGGCGGAGAAGAGCGTCGCGCCGGTGTGGAAAGAGGAGGCCGCGTTCGACCTGCCGCTCTTTCACCCCAGTAACGCGGAGCGCTGCACCCTACAGGTGTCTGTGATGCACCGGGCTTTGGTGGGACCCGATAAAATGCTCGGACAGGCGACCATCAACCTCCTGGAACTCCAAGACAATAAAACCCGTAACAAAACCGAatggtTCAAGTTGATGGGAAAGACGGGAAAGGCTGACAAAGACAGGGGAGAGGTGCTCCTAGACATTCAGTTCATGAAGAACAACATGACGGCCAGCATGTATGACCTCTCTGGGCAGGACAAGTCACGCTCACGGCTTGGGAAGATCAAGGATAAGCtgaaagggaaaaagaaagatgGGATGTCGGATTCTGCTTCCGCCATTGTGCCTTCAGTCGGCCAGGTATTGACTGACAGCGAGGGAGAAGAAGAAACTGACACCACAGCCGGAGCCAAAAAGAAGAATAAACTCAAGTCCCTCTTCGCACCCAAGCCGGGTTTGCACCGTAACATTTCCCAGTCCATGTCCACACTTGCCACCCTGCCTGAAAAAGATTCGGCCATCAGCCTGAGCAGATCGTCTGGCCTAAATATAGAGTCTCCTGAAGgcaaaaagaaattcaaatttCTGAAGCACAAGCGGACTGGAAGCTCTGACAGCAAGGTTTCCCAGGGTACTGGGTCTCTTGGACCGGGCATGGTGCAGAACAACTTGTGCATCAACGGCAGTCACGTCTACACAGAAGAACCAGAGACCAGAGGATCCAGGGCTGGTTCCACCTTCAGCCTGAACAGCTCTGGCCACGGATCCATGGAGGACTTGCGCAGAGGTCATGACCGGAAAACCTCCAGCACCTCAATGGACTCCTCGGACCAGACTCAGGAGAATGCAGTGGAGGAGATGCGCAGAAAACAAGAGGAACAGAggaaacaggaagaggaagtcagaaaaagaatagaggaagaaaaaagacaggctgaagaggaggagaggaaattgttagaaagagaggaagagaagagaaagcTACAGAAACTGGAAGAGGAAAGGAAAAGGATTGAGAGAGAGGAATTAAGAAAGAGGATAGAGAAGGAAGAAGAGCAAAAACGAATTGAAAGAGAAgaggaaattaaaaaagagagagaagaggagaggaaaaggatggagaaggaggaggaaagaaagagagaagaggagaggaaacGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAAGGGAAACggatggagagagaggaagaaagaaagagggaagaGGAGAGGAAACGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAGAGAAAACggatggagagagaggaagagaagaggaAGCTAGAGAAAcaggaagaaagaagaagaattgaggaagaggaaagaaaaagaattgagCAGGAGGAAATTATCAGAATAAAGAAAGAACAGGAACGAGTTAGACAGGAAGAAGATAGAAGGAAAGCTGAGGAGGAGAGGATCGAAgaggagaaaaggaaaagaatggaggaagaggaaaaggCTAGGAAGGAAGAAGATAAACTAAGGAGAAttgaggaagaggagagaaCGAGGCTTGAGAAAGTAAAGttgcagaaagaagaagagacaAGACAGTTGGAGATGGAAAGAAAACGGGCTAAAGAAGAGGAAAGACTActcagagaaaaagaaaagatggaagcagaggagaagaggaaaaggaaagaggaagaagagaaaaaactgTCTGAGGAGATGGAAAGAAAAGAGCAAGTAAGGGtgcaaaaggaaaaagagaagtTGGAGCTTGCGAACAAGAGAATGGAAGAACGGATGAAAGTGGAGCAGGCGAGAAGAAAggctgaggaagaggaagagaagagaaagcTGAAGGAGAAAGCAGACCAGGAGAGAATCAggcaagagaaagaagaaatagagggacagaagaaagaaatagaaCACCGACCTGAGGTGAAACCCAGGAGTGCTCGACTGAATACAAGTAAAAAAGCATTTGACGAGATAAATTCGGACAACATCCTATCCACCAATCCCTTTGAAGACCCTCTCTTATTCGACGAGAGCTCCACCAATCCCTTCGAGCAACCTACTGTTTCCCAACCTGAAGCCCTCAGTCGGTCCAGTAAAGTCTCCGCAGTCAAGCCAAGgccCCATGCAGTGAAACCCCTGAGCACTGCTGACAAGCAGCCAGACTTCAGAGAGACCCAAGAAGCGTCTCGATCTGctaaaatgatgacagatgacGTGCAAGTTAAGATGAAGGCCCCAGAGGCTAAAGGGACGGGGCCGTACTCCCAACTCACCCATGAAGAGCTCATTAACTTGTTGGAAAAGCAGAAGCAGCAGCTTTCTCAGAAGGACGCTAAGATTGGGGAACTGGAGCAGTATATAGACAATCTTCTGGTCCGTGTCATGGAGGAGAACCCCAACATTTTAATGTCCTTTAACATGATGAAGAAGTCCATTTGAGCACTTTTTCTAGCAgggttttgtatttaatgtgcaCTTGGGTGATTGACAGTACATGGTTGTGGGTGAAGACAGGTTTTCACTACATACACTAGCGAGCCAAAGATCAGGGTGTACACTTAACGTCTTGGCCTGAACAGTGACGAAATGAATGTTCTTGCTTCAACCATGTGACTGACTTATTCTTGtacatgttaaaaagaaaagaaaagaaagtattttCTTCAAAGGTTTATACTGTATGCTTTTTCCATTTGAATTGCTAATATTCTTCGAATAGtatcatataaattaaatatatatcatatatcaaaGCATTCAATGGATACAACATATACTttcaatgttttctataaatgACAAAGCTGTATGATATTTTGTAGGCAGATCTCTGTATTTCAAAGAAGCACTTTaagttcatctgtaaataatgaACATGTGATCATTTGTACTTGCTTAGCGAGCGGCTTTGTTATTCCCTGCTTTTGAAATAAAGAACGTCACAGGTGTGGTGCTTTGTAAAGGGCAGCGTCACATGATTCCGTCTGTGTGCACTTTCAACTATACAGATTAAGTTTTATGTgattattattctaaaaaaatacaattaataacaaTTGAGGGAATATCAGATGTTGCAATTGCCCATAACAAATATGGAGGATTGAGAAATGCTTGAAATTGACTATGGTGTCCATAATTTCTTATAACTAAGCCTTCTCTgttctttataataaaattataaaatatgtggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115092 lncRNA downstream 7425 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 63261 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 66595 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 67414 15927186 ~ 15927498 (-) True G77830
TU115104 lncRNA downstream 73552 15920921 ~ 15921360 (-) True G77827
XR_006251962.1 lncRNA upstream 89478 16098995 ~ 16101344 (-) True LOC122353141
TU115278 lncRNA upstream 162961 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 169083 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 180017 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 180017 16189534 ~ 16193540 (-) True LOC122352611
XM_043251108.1 mRNA downstream 940 15989593 ~ 15993972 (-) False brf2
XM_043251109.1 mRNA downstream 940 15989593 ~ 15993972 (-) True brf2
XM_043251107.1 mRNA downstream 941 15989593 ~ 15993971 (-) False brf2
XM_043251111.1 mRNA downstream 943 15989593 ~ 15993969 (-) False brf2
XM_043251112.1 mRNA downstream 943 15990347 ~ 15993969 (-) False brf2
XM_043250694.1 mRNA upstream 7159 16016676 ~ 16021774 (-) False LOC122352931
XM_043250693.1 mRNA upstream 7159 16016676 ~ 16021774 (-) False LOC122352931
XM_043250692.1 mRNA upstream 7159 16016676 ~ 16021774 (-) False LOC122352931
XM_043250691.1 mRNA upstream 7159 16016676 ~ 16021774 (-) False LOC122352931
XM_043250690.1 mRNA upstream 7159 16016676 ~ 16021774 (-) False LOC122352931
TU115089 other downstream 97814 15893683 ~ 15897098 (-) False npffr1l1
TU114910 other downstream 636680 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 705240 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 887160 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1405013 14569361 ~ 14589899 (-) False vwa3a
TU115119 other upstream 7154 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 21010 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 109269 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 109435 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile