RNA id: XM_043250440.1


Basic Information

Item Value
RNA id XM_043250440.1
length 1910
RNA type mRNA
GC content 0.43
exon number 14
gene id pstpip2
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 507604 ~ 515636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGATCCTCGCGTCTCTCTGAAAGCGTTATTACCAGCAGATACGGAACTTCACTTTCTGAGAGAGAACAGCATCCGACGCGATGAGAGAACTACGTTTCAAGGATAATTTTTGGAACACCGATATCATCAGCACAGCTGGATATGACAGCATCATCCAGCACCTGAATGATGGCAAGAGGACATGCAAAGAAATCGAGGATTTCATGAAGGCCAGAGCCGCGATAGAAGAAAAATATGCCAAGGAGCTGCTGGGTTTGTCCAAGAAAGTGTGTGGACACAGCGAGATGAAcacCCTGAAACGATCGCTTGATGTTTTCAAATTAcAAACAGAAAATGTCAGTTTGGCCCATCTGCATTTGGCCCACACCATGAGGGAGGAAGCTAAGAAACTAGAAGacttcagagagaaacagaaagaggcCCGGAAGAAGgtagaACAGCATATGGATGTTCTTCATAAACAGAAGGCGGCACAATGTAAGAAAACGGCTGAGgCGAAGAAGACTTATGAGCAAAAGTGTCGAGATAAAGAGGAAGCAGAACAgaacatgaacagaaatgcCACCACCAGCAGTTCCAAGCAGCAAGAAAAGCTGTATGCCAAAACACAGCAAGCCAAGCAGACGGCGGAGGAAGCTGACAGGATCTACAGTCAGAACGTGTCCTTGCTGGGGAAGCTGAGAGACGAGTGGCTGAACGAGCATGTCAAAGCCTGCGAGTTCTTTGAGAGACAGGAAGTGGAGAGGATCAGCACCTTGAGGAGCGTGGTGTGGACTCATCTCAATCATCTCTCGCAGCAGTGTGTCACCAGCGATGAGCTCTACGAGGAAGTGAGGAAGTCACTGGAGCAATGTAACATTCAAGAAGACCTCGAGCATTTTATCAACCTCAGAAGAACCGGAGACAATCCTCCAGCACCTGTTCCATACGAGAACTTCTACAATAATCAGAGATCAGCTCCCACTCGTTCCCTGCCCACAGCTGGCAGGAGAGCAGCAGCCCCTCCACCACCAACTGCAGAAAatgaTCATTTATACTCAACCGTAGCAGAACCAGGGTACAGCCTCATACGATACTAATAAGTTCGTGGCTCGGTAAGAATTTCAGCAGGAATGTAAACTTGTCGTGCAATTCACAAACAGTATGATATTAACGTTGGACCAAGTATTATACAgttaataatgttgtttatgAATACCTGGAATGCTCCCTTGAAGAAATGGTGTTCAAGTGattcattttcctctttttcagtCTTTGCAAGCCCTTTTGCTGCTCAGTAGGAATATGGTGAAGGCATTTTTGTTACAGTTGTATCAAGGGTTGAAAAACACATTAGTTAGCCTTTAATGCTGTAGCCAGCTTCCTCATACCATGTGGTGTGAAGCGGTTCCCTGTCTCTgtatgaacaaaaaacaaaacaaaaaaaacattgttaactTGCTAACCTAAAATCCGAGCAAGCAAACACAGTGAGCTTTGACACTTTTACAATCATAAAACGTCAAATCCTGAAGTTCTCACTACAACGATAACATCACCAATgttgtataatatttgtattttatttactgtaaaaaaggATGTACAATTCTGCACTACTAGTGGCATCAAATGGAATTGCTGTGGGTTTGAAAAGCTTTACTGGGTTCAACCAATAGGGTGAGTTTGGAGGCGGGGCTACATGTTTGGCCAATGGAAAACAGGAAAGGATctgttcttttgttatttttaaaattcagttttggtGTAGCTAGTGGTCCAGAAATGacacatttgatttttaaatcagctttttataaaggccaaaaatatataatttatttttattgtaaaattctACACACTGTCAATACAGAGTCCTGTATCACTGGATATGTTGCTTCAataaatatagtgtatatacgA

Function

GO: NA

KEGG:

id description
K20124 PSTPIP2; proline-serine-threonine phosphatase interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108837 lncRNA upstream 78334 428856 ~ 429270 (+) True G73560
TU108834 lncRNA upstream 80089 424953 ~ 427515 (+) True G73559
TU108811 lncRNA upstream 108748 397730 ~ 398856 (+) False c10h5orf63
TU108786 lncRNA upstream 110503 349308 ~ 397101 (+) False G73519
TU108886 lncRNA downstream 136908 652544 ~ 653003 (+) True G73589
TU108885 lncRNA downstream 137978 653614 ~ 673309 (+) True G73588
TU108988 lncRNA downstream 167531 683167 ~ 774374 (+) False pmaip1
TU109003 lncRNA downstream 279699 795335 ~ 795689 (+) True G73656
TU109004 lncRNA downstream 280510 796146 ~ 796408 (+) False fstb
XM_043249978.1 mRNA upstream 1484 504360 ~ 506120 (+) True sub1a
XM_043250898.1 mRNA upstream 87150 412893 ~ 420454 (+) True aldh7a1
XM_043249793.1 mRNA upstream 108745 396440 ~ 398859 (+) True c10h5orf63
XM_043249792.1 mRNA upstream 221364 242243 ~ 286240 (+) True LOC122352377
XM_043250977.1 mRNA upstream 270298 227186 ~ 237306 (+) True LOC122353112
XM_043250971.1 mRNA downstream 20772 536408 ~ 564154 (+) True mtrex
XM_043250893.1 mRNA downstream 98238 613874 ~ 616743 (+) True hvcn1
XM_043250894.1 mRNA downstream 98262 613898 ~ 616743 (+) False hvcn1
XM_043250895.1 mRNA downstream 98691 614327 ~ 616743 (+) False hvcn1
XM_043249977.1 mRNA downstream 107636 623272 ~ 633992 (+) True pptc7b
TU108810 other upstream 108748 398268 ~ 398856 (+) False c10h5orf63
TU108992 other downstream 177564 693200 ~ 695923 (+) True isl1b
TU109131 other downstream 418433 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1595560 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1678461 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 2073509 2589145 ~ 2705339 (+) False cntfr

Expression Profile