RNA id: XM_043250450.1


Basic Information

Item Value
RNA id XM_043250450.1
length 10018
RNA type mRNA
GC content 0.47
exon number 24
gene id cux1a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12915183 ~ 13028810 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCATCACCGTGTCTCATTAACAATGAGGTGAAGCGATACCGCACACATCCGATAGAGGGCGCTGCTCTCCAAGTTCAAGTTCAAAAGCAGTATTTACAATTCATCAGGAATCGACCGGACAAGGGTTTATGTTATAACATCAAATCATCTAATGCCACCATCTTAAACACCGTCCataaccatttaaaatgcatatcgCTTCATGCAGAACAGTTATATGGAGGACAGAATGTGTTTCGTTTTATTTAAGCTATCGATCGCCGTATCCACATTCTTCACGCAAGAATGCccataaaatcaatataatagATGTATTGGTTTTTGAGTACAAACAGAGGGTAGCTGGACATGTACACGGTcagcattaaaagcattttaagacAGCTGCGCGCACGCAAGAACATACGGTATATATTTTCAATAgggttgaaaatgaaaacaaatcagaaaTCAATATATCAGGTGTATGAATACAACAACAGGCCAGAAGGTTCATCTGATCACGAGAAACGTAAAAAACACTCAAGCGGCGCGATGCGTTCGCGTCGCTGCCGTGATCGCGTCAGATCTGATCAGCGTCTCGTAATATCAATCTATAgcgattataaaaaaaatcaataaccGTATAAACTCTCTTCTTTTAACGGATGAAAACGTATCCAGCATCCCCCTCCCGCTCCTGCGCCACGGGGAGCTCGCCTGAACGCGGAAACTCCATTCCGCGTTTTCTGCCTTTTATCGAGGACGCTCTCAATAATTGTTTTCAGTAGCCCTATTCAATATCGCAGGTCGGCGTTCGTTCGATAACTCCGTTCCTCGCGCGCCCGCGCCGTTCGATCCGCTCCGCTCCGTGTTTTGCGCGCGCTCccccgcctctctctctctctcgctctctctctctctgctgaaCTCCAGCccctctcgcgctctctctaTCAGCCTTTCATTCCGTCTCAATATGTCTCAAGATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAACGCTTTGATTTGCAGCAGCTCCAGAAAGAACTGGATGCCACCGCCGCAGCCCTGGCCAATAGACAGGATGAAAGTGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGgaTTTGCGTAAACAGATAGCTCCTTTGCTGAAGGGCTTCCAAGCAGAGATCGACGCCTTGAGTAAAAGAAGTAAAGAATCAGAGGCTGCTTTCCTCAGCGTGTACAAGAGATTAATCGATGTCCCAGATCCTGTCTCAGCTCTGGAGGCAGCTCAGCAACTCCAGGTGACTGTTCGGAAGATGCACGACTTGGAGACAGAAAACCAGACGCTCAAAGATACACTACAAGAGTACGAACGTGAAATTGCAGAGGTTAAAAACCAAGAAGTCACTATTAAAGCACTTAAAGAGAAGTTGGAGCAGTATGAGCGTTCTCTGCAGGCCAAGAACACAGAGGAAGCTCTCGATCAGAACCAGGACCGATCAGGAAgagaagagagggagagcgaAGGGGAAAACCTTCCTTACAACTATGCAGACAAGGAGAGTCAGCCACAGCAGAGCCAGGACAGCAGGACAGAAGACTTGGACGTGAATACGCAGTCCTTACAAACAGCACTTGAAGCAACTCAGGCAGAACTCCATGAACTGAAGACGAAATACGATGAAGAATCCACAGCAAAGGCCAATGAGATTGAAGCGGTGATGACAGATTTGGAAAGAGCCAATCAGAGGGCTGAGACGGCAGAGAGGGAGGCCGTGAGCCTGAGAGAGCAGCTCACTTCAGCTGGCAAAACCCTGCAACCATCCAATCAGATCCAGAAAGCACCGGAAGTGGACAAGTCTCTGGAGGCAGAGCTGGGTGCGAAGGAGAGGGAGGTAGAGCGCTTGGCAGAGGACGTTCAGAGACTTCAAGCCAGTCTGGCCCAGCTCAGCGAGACCTCCACCAATCAGATCAGCCAGCTCGAGCAGCAGCTGAGCTCCAAAGAGGCCCTATTAAAGCAACTTGAAGAAAAGCTTCAAGAGCAGTCAGACTACGAGGAGATCAAACGAGAACTCTGCAACATAAAATCAATGGAGCACAACTCATCAGATCATCACTCTTCAGTACAGGACTCATCCAAGCCGTTGGAGATGTTGTTGACGGGGAAAGTCCATAGCCAGCTGTCCGAGAGTGCTTTGAAACGACTGGCCAACAATGACTTCAGTGGATCAGTGGGGCGGAAAAGTAAAGAAACCACAGTGGAAAACCCTCAGCGTCTTCCTGCCACTCCAGTCCCTACCACGCTCCAGGGGTCCCCTCCTCCCCCCTCCCCTCAGCTTTTGATGAGGACGGGCACCGCTACCTCCGAATCTGCTGCCAGTGCCAATGGTACCCACCCTTTCTCCCCCACGGGCATCGGGCCAGACTTCTTTACCCCCGGCATGGCCAGCGTGGGCGCCACGTTCCCCCCGTTGGCTGGCAAAATGGCACTCAACTCTCTTCTTCAGAGGCAGCTCATGCAAACCATCTACACCAAAGCCCTCCAGGACCCTTCTCCGAGTTCTGTGCTCTTCGGGCCGCCCCATTATGCTACAACCAACTCTCTCTCCAGCCCCCTACCCCCTCAGTCAGCGGGCAGCCCGGAGGTTAACGGCCTGGCGCCCTCTCCCAGCCAGTCGGAGGGCGCCGGAAGCACGTCGGAGGGGGAGGAAATGGACACGGCTGAGATTGCGCGACAGGTCAAGGAGCAGCTGATCAAACACAACATCGGCCAGCGTGTGTTCGGCCATTATGTGTTGGGTCTGTCCCAAGGCTCGGTCAGTGAGATTCTGGCCCGGCCCAAACCCTGGAGCAAGTTAACTATCCGTGGCAAAGAGCCCTTTCACAAGATGAAGCACTTCCTGTCTGATGAGCAGAACATCCTGGCGCTGAGGAGCATCCAGGGCAGGCAGAGAGAGAACCCAGGCCAGAACCTGAACAGAGTGTTTCAGGATGTTCCGAAGCGAAGAACCGGCTCGGAAGGCTCCACGCGGCCAGGTAACATCACCACACGGATCCGCACGCCTGAGACTGGCTCCGATGAAGCCATCAAGTCCATCTTGGAGCAGGCCAAGAGAGAGTTGCAAGTGCAGAAAGCAGTTGAGAGTTCTCAGCCTCCGTCCTCCTCCAGCAACTCCGACGAGAACATTCGTTCCATCCTTGAGCAGGCTCGGAGGGAGATGGAGGCCCAGCAGGTGGCTCTGGAGCCCGTACTGAAGGCCAACTCTATGGCCCCGACCGATCTCTCGCTCCTGGGCTCTCCGCTCTCCGCCCTCTCCTACACCCCTGTTGCTCAGTCTCTGAAGAAGCCCTCCACCTCTCCTCTCTTGGATTTCCACAGTGGGGTGAAGAAGGAGATGGGTGAGGTGGCCGTTTCAGATGTGGGGGTGGACGGAGTGCACAAGCTCGGACGTCTCTCTGAGAGTGGAGGAGGTTTAGGTGGGGGTTCCTGGAGGGAGCACTGGTGGAGCACAGGTCTCTCTGAGCGTCGCGGAACCGGGCAACCCTCGGTTAGTGAAGATGCTCATAGCCAAGAGGACAGCAAGGAGAAGCTCCCTCGGCTGGGTAGCACAGCCCCAGTGGCTCCTGCTTCCTCTCTGGATTACTGGAAAGACTGGCCCAGCTCAGAGTCCCCGTACTCCCAGAGCTCAGAGCTGAGTCTGCAGATGCCCAGCGGCAGCGAGACCCCTCAGAGCAGCCCACTGCCTTCCTCCTCGCCTTTACTGTCCCTCCCCAAAGTCGCCAAACCTGTGGTGCCCCCGCTCACACCTGAGCAGTACGAGTACTACATGTACCAGGAAGTGGACACTGTCGATCTCACACAACAGGTCAAAGACAAACTAGCCAAGAATGGCATCTGCCAGCGGATCTTTGGCGAGAAGGTGCTGGGCCTCTCTCAGGGGAGCGTGAGCGACATGCTCTCTCGGCCGAAGCACTGGAGCAAGCTCACGCAGAAAGGAAGGGAGCCGTTTATACGCATGCAGTTATGGCTGAACGGAGAGCTGGGCCAGGCGCTGCTGCCAATGCCTGGACAGACACAAGAGATTACTCCGAAGACCTCAGCCAGCTGCAGTCCTGCCCCAGAATCCCCTCTGAGTTCGGCTGAGGAGTCTGTTAAAAGCCAGCAGGAAGAGCAGATGTGTCGTGCGTCCATCCAGGAGCCCAGCGAAACTTCTGAGTCCCAGCCCGGCACGCCTCTACCTTTACCTCTGCCGGGACACTCAGGGCTCAGCATACAAGAGATGGTAGCGATGTCACCCGAGCTGGACACCTACGCCATCACTAAGAAAGTCAAAGAAGTTCTAACAGATAACAACCTCGGTCAGCGTCTGTTTGGCGAGAGCATCCTGGGTTTGACGCAGGGCTCCGTGTCTGATCTGCTGGCTCGACCCAAGCCCTGGCACAAGCTCAGCCTGAAAGGTCGAGAGCCATTCGTACGCATGCAGTTGTGGCTGAGCGACCCGCGGAACGTGGAAAAGCTCATGGACATGAAACGGATGGAAAAGAAAGCCTACATGAAGAGGCGCCACAGCTCCATCGGTGAGAGTCATTCACTGGAGACTGGTCTGTCAGGAAGTGACCTCACTCAGAGCTCCAGCCCCCAAAACCTGtcccagcagcagcaacagcagcagcagcagccccAGCTGAAGAAACCCCGTGTGGTGCTGGCTCCAGAAGAGAAGGAAGCTCTGAAGAGAGCCTACCAGCAGAAACCTTACCCTTCCCCTAAAACCATTGAGGAGTTAGCGAGCCAGCTCAATCTCAAAACCAGCACGGTCATCAACTGGTTCCACAACTACAGATCCCGTATCCGGCGAGAGCTCTTTATCGAGGAGATCCAGGCTGCAGCCGGCGAAGGTGGGTCCCCCTCAGCGCGGCCCGGGAAGTCTGGGGGCGAGGGAGACAACAGCTGCGACGGCACCGAATCTGACAGTACCGCGGAGGGCCGACCGAGCGGCTCTGAGGAGCGCAAGTGCCTCCTGGAGAGCCCCAGCCTCAGCCACAGAGACGAAGAGGGCGAGGCCGAGTTCCCCAGCGCCTCGGGCTCCAGCAGGCCACGAGGAGGCATCATAGACAGCCTATTCGGCATCCCCGAGTCCGTATCCGCCGCCACTGCCGCAGCGCCCCCCTGCCGAAACCCAAAGGACAGCAGCCTGCGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACAGGCTGGAGAAAGCGGCGAACCGCGACGAGCCTCACGAATGGGAGTTCTGAGGCGCCGCCATGTTGTTGTCGTTTTATTCTCACTTTGTCCCTCACTGAGCTAACCCGGCCAAGCCTGGTGCACACACAACACCGGTTAACCCAAGGGTTTTCGATTCGCTGTTTAGAAGTGGGTTATCAGAGACAAGAACAAGAAAAGGAAACAAGTTTTagtctgtttattttgtgaagcACTTAACGGCCCTGCTGGCCACAGGACCGTGACACCATTGGCTAATGGTGAAGACACAAAACTGAAAAGCACAGGAGAGGGAGCGTTCCCACGAAATCTTCTCAAGACTGGCgacagttgcaaaaaaaaaaaaaaaaaaaaaaacacacactatgATATCACAGTGTCTCTATTTCTAATAGGGACGTTCTCACCAACAAGCTGAATAACTGTTACAATAATTTATCAGTTCTCAAGAGTCTTGGGAGTTTCCTCTTTTGTATCACGTACGCTTCGGCCGCAAGCAGAGACTAGTTCGAACCGGTTTCAAACCAAAAGTCAAGCATTTAAAAGCAAGTGTTGGCTGAAGGAACACGGGTGCACCGTCCCACCTGCCTCTCCCTCCCTACCCCAGAGGAGGCCATCCAATGGCTATGCAACTCTAGTACGCAATGGATTCCAGCGTAATGGAACCCGCATTATTTTCACAGTTCGGAAGCTTCTCCGATGCGAGAAGAAAATCCTTTTTATAGCAATTAAGTTGCCACCGAGAGATTGCACAGTCAGTTGACTCTAAACAGCACTCCTTTTGATTTTACACGCCAACGgcctaaaaagagaaaaaaatcatgcgAACGAAAAATTATCATCGTAAATAAGTATCCACGATCACGCAAAAATTCATACTGTTGTTGTAAGGTCGACGCGAAGGGGAGACGGGAGTAATTTCGTAACTCGATAGCTAAGTGTCAATTTTTATCGTTATTTAGGTCTCTTGTAAGGGTAGCTCTCGTTTTTTTTCCATAGCTTTAATCGCCTCCGCGACTTGCGTTTTGAAGCCCGCGGAGgtcttgtttaataataaacgTCATTTTAGGCCAAAACAAAGACAGatagtgaagaaaaaaaaaaggatttgtaCAGTACTTTGAGTAAATATTCCTgacaagatattttttaaagagaatgaACAAGCCTGATTTTTATCCTCTTATAATAGAACCATACATCAGAGACCTCTAACCAAGTTGGGCGGTTTGGGCCCATAGAATTACAATTCTAATCCAATATCTATGGTGTTATAAATTCTAATTCTATGGTGTGGCCGTGGGCCACTGCACTGTATGGGCTGGTCCTCAGCACCAGGGTACCGGACGCTGAGTGCGAGGGGAAACCCACCTAACCGCTCGCTCTCGTGCAAACTCGAAACTTCAGGTTTTTCACCAGCTTCTCCATTCACTGTTCACCCAACCGTGTACGAGCTTTTCGTGGCGTCCGCAACATGTTCACGGCACGCATCTGTCCTCCGAGACGACTGGAAAAACTCCTTACGAAACggacttgttttgttttttcttcatactGTATATTGACGGAGGACTCGGACGCATTTTCATCTACATTTCTTGTTtgacacgtaaaaaaaaaaaaaaaaagaggaaaatatgTAGATTGTGAATGAAAAGCTCTTTTAACGTTAGCAACCTGAGGTGAATCTCTACACTCGCGCGTCAGAGGACGCGGCACGGACTCGGCACCTCTGTAGAAACGTTCTTTCTCTCCTGAAACACCTTTCGAAACCTGCTCACCTTTCACCTCCGGCCCTTGTGTCGTTGTATGCAGTTGATTTTGTGAACGAAAGCGCAGATCGGTGGTGCCACGCGCTCGTCTGCGTGCGAACCTTGAGTGTGAgggtgtttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgattgtTGACAAGAGcgatttatatttgtatattactactactactcgCCACAGGCAGTGGAAGCAAACACCTCCTCACGTCCCTAAGCTATTTAGCAGTCCTGCAGCATATCACATAGTACATTTAagttctttttatttacacGCATAAACTAATggtagatatttttttttttttgtttgttggtgtGGTTTGCTTATTTATAGATGCTGTCTTTTACATATTGATGTCTTATATTGTTATacgtgttcttttttttgtaatggaaGGGACTATAAAAGGTCAGGTTACATATTTTTAGACTAATAGACTGCCGGCAGTATtggattacatttaaatgatgtaCTTTTGATACATGTCTATTGATTAATTCTGAagattatcttttttttttttttttttttttttccatatattttaCTCTGTTAGTGAGCTGGATGAACAGTTACTACATTGACAAAGGAAGCAGAATTCTATGTATTgcattaatgattttaattagcacgcattttagatgttttaacaattttaaagatGACAATTCAAGATGAATTGGAGTTTGGCTGTATTCACTCTACAAAGGCAGACCGATTGATGCTCTTGAATTGGGTTTTAGGTAATGAATTAACCTGCGAACCGTTCTGAGATTACGTACGTTTATAAATCGCAATCAAGCTTAGTTGCTATAATGAGCCAGTGAACAACTGGTAGTGAACGTCACTGAAATTAGCTGTCGCTTTGAGCTGCACCTTGAGGAATTGGactctttttggttttgttctgttttttgtttcgtttttagTGGGAATGAAATTCACTTGATGTCGTTCGGTTGCGTTAAAACTTACGCCGGCGAATCTTgaagaacaacgtcggcttaaAACTACCTTTGGCCTTTTTTATGTGTGCCAATGAatgattcaaatcaaatttgTCTCTTTAAGACCTAACGAAAGCACAGAGAGATACTTCATGAACCAATGTTTTTATCGGAATATGCGAATAATACGTCGAAAGCCCGTGACTGTTTCTCGAACTTTCTCTCCACGTCTAACATTGGAGTGCCTTCACTGAAAACTCTTCGCTACTATAATCGCGTCGTCTTCATTCCAAATAAGTGATTGGAAGTATATCGTGTCAGATCACACCACGTTTTAGCAATTTTCGCCAGCAAGTTTAATAAATAAGGTCTCATCTAGTCTCAGGTCATAATATTCTGTACTTTTAGGGTGTCTGTATTGTTTTATCTGAGAGAAAAACAGCTGTCCCAGGATTCAGGcttggttattaaaaaaaaccaaagttTTTACAATGGCAATTTCGATCGGTTAACTTCACATTTCTTTGTCCCAAATGTCGTTTTAGTCATTTCTTAGGCATCCATTATATGTTTTGATCATGTTATTGTGTTATTGTAACAGTAGGATCCCCCCCATGCTGGAGGAAGTTCATAGATGGATTTGGCATGTGGAAACTCTCGAAAATGATTTGTAGACTATACTGTAGTGTGGACCAAATTGTCAGAACCGACAAATCAACTTTTAAAGACTCTTTTCTGATCATGAACATGTGATTTTTCAATTGAACGCAGACGAAGAAAAACTCACGTCTAGGAGCACATTGAAATCTGGTCTATATTAAGGACGCTTTTTTATGTCTGTCACGTTCTCACTGACTGAAACCGTAACCGTACTGTTGATACCATGGCATGAAACACTTAGAAGAACACGATTCTCAATGCAGATGTCCAGCactttttctctgctttttgcaaatatttttctatGGAAAGTATTGCAGATGACTAAATAACACATCAACATACGACTGCACAGACAGCACGTTTATATGATTTcttaagaaaaagacaaaaaaagaaaaaaagaaaaacaaagcaacaaaaaaaaaaaagatcatcatTATTGATATTACATTGGTAGTCACGAGTAGCATTAATGTAGATATTCGTCCGTAGCTTAGTTCGCTAGTGATGTCATAATTGTTACCTCGTTTATTCCCTCACACTTACGTCACTTCCTGAGACAGTATGTTCTTTCTTCACCTGAGACAGTATGTTCTGAACAGCCACAGTTTGTTTCATTGTATCCCAGATGgagattttctctctctttcgtttcgtttcgttttgttttgaaagttgTGTAATTGTGTTACATGTGAGGCGAGCACGACGATTATACATCTGTCTCAGCGAGAGCAACACTTTAACCAAGTTATCACGATTCATTTCGACCAACAACCTATGGAAATGGGATGTCTTGATCATGACGTTCggatctctatctctctctgttgttGCTCTGTATGCTGTAATATGGGTAATATGAAGCCTTGTAATGAAATATGACAGGCAGCTCCCAACACAAGCTGGTATCCTATAGATTCTCCTTAGGTCTCTCAAAGCTCAGGTAGAACCTCGGTTTAGCACAGTCCTTTTGTCCATTAGTTTGTTGGTGACACTTTCCCTCTTACACCTGCTAACGACAGTTGTATGGTTTATTTTTCTATGTGTCATGGTTTTGAACCACAAGATGGAGCTGAATCCTCCATTTTACCTGAATAAAGACTCTTCCACTTTGTTCTCTTGATATGTATTTAGTTTGGTTGGTTTTTCCTTTGTGTATCATCATGTAGTCTTGTATTCTGTTCCCAGCGCTGTTACAGTTCtaatccaaaatgaaaaaaaagcaatatcacTGTTtgaaattcattattattattattattattattataattattattattattcctcaTTGCCACCATAGGTGTATTAACTGAAGTAAATATCTTTTGTACAAACACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114135 lncRNA downstream 34448 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 36530 12874551 ~ 12878653 (-) True G77135
TU113780 lncRNA downstream 235965 12679007 ~ 12679218 (-) False uvrag
TU113778 lncRNA downstream 236558 12678367 ~ 12678625 (-) True G76912
TU113766 lncRNA downstream 305085 12605219 ~ 12610098 (-) True G76902
TU114171 lncRNA upstream 4932 13033741 ~ 13035585 (-) True G77157
TU114230 lncRNA upstream 181807 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 284385 13313194 ~ 13315574 (-) True G77220
TU114273 lncRNA upstream 299833 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 457458 13486267 ~ 13488833 (-) True G77284
XM_043250457.1 mRNA downstream 2651 12908571 ~ 12912532 (-) True kctd7
XM_043250453.1 mRNA downstream 6744 12901052 ~ 12908439 (-) True rabgef1
XM_043251067.1 mRNA upstream 7225 13036034 ~ 13051363 (-) True LOC122353147
XM_043250779.1 mRNA upstream 23305 13052114 ~ 13055376 (-) True bcl7ba
XM_043250777.1 mRNA upstream 27262 13056071 ~ 13060135 (-) True tbl2
XM_043249939.1 mRNA upstream 31903 13060712 ~ 13070717 (-) False prdm15
XM_043249938.1 mRNA upstream 31903 13060712 ~ 13070717 (-) False prdm15
TU113815 other downstream 126093 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 1709957 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 509920 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 614482 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 777310 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1173453 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1173453 14202262 ~ 14202837 (-) False G77440

Expression Profile