RNA id: XM_043250474.1


Basic Information

Item Value
RNA id XM_043250474.1
length 2539
RNA type mRNA
GC content 0.41
exon number 8
gene id hnrnpd
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3601612 ~ 3607788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTTGACTTCCGTTAAACCGCCATTTTGTGAATGGACGCCGTTGCCATCGACATCCTGAAAGCAGACTAAAACAAACGCGATTCCGAGCCCAATTTAACACGACTTACCGGCAGTTCCGTCGCGTTTTAACCTACGGCGTTTtttctctggaaaaaaaacgaCGAATAGCCCGTGTTTTCGCCGAGAACTGATCAAAGATGTCTGAGGAGCAGATCCTGGGCGAGGAGTCGCTGATGAAGATGGAGGAGAATGATGGAGAGGGTTTCGGTGAAGAGGAGATCCTGGGGGCTGATGAAGGAGGTCAGGGAGAGGCGGAGGGCTCAAAGATAGACGCCAGTAAAAACGAGGAAGATGAGGGgaaaATGTTCGTTGGAGGCTTGAGTTGGGACACAACAAAGAAAGACCTGAAAGATTACTTCTCTAAATTTGGAGAGGTGGTCGACTGCACCTTAAAACTGGATCCTTTGACGGGCCGATCCAGAGGATTTGGATTTGTTCTGTTTAAAGATGCTGAAAGTGTGGAAAAGGTGATCTCACAAAAGGAGCACAAACTAAATGGAAAAGCAATTGACCCTAAGAAAGCAAAGGCCATGAAGTCCAAAGAGCCTGTGAAGAAGATATTTGTAGGAggtctttccccagatactccaGAAGAGAAGATCAGAGAGTACTTTGATGCCTATGGAGAGGTGGAATCCATTGAGCTGCCaatggagaataaaacaaataaaagacgaggtttttgttttataacgTTTAAAGAGGAGGAACcagtaaagaaaataatggAGAAGAAGTACCACAACATCGGTTTAAGCAAGTGTGAGGTCAAGGTAGCCATGTCAAAGGAGCAgtaccagcagcagcagcagtgggGTGGAAGAGGAGGATACGCCGGCAGAGCTAGAGGCAGAGGAGGTCCCAATCAAAATTGGAACCAGGGATACGGAAATTACTGGAATCAAGGTTATGGAAATTACGGGAACTATGGCTACAACAATCAAGGCTATGGTGGATACGGGGGCTATGATTACTCGGGTTACAACAACTACTACGGATATGATCAGCAGAGCGGCTACGGCAAATCCCCGAGGCGAGGCGGCCATCAAAACAGTTACAAGCCGTATTAACGAGAAATTGTGCAGCGGGGACTTCCTTGCAGGCCATGAGCTGACTTCCCGATTGTCTCAGGCCCGCTCAATGCGGACAGGGTACGAGAGGCGTACGCTCTCGAATGCTCCCATTTGGTATGGTCTTCCAACATCCTGTATAcgaattgtaaaaacaaaacaactacagcaacaaaaacataaaaaaggacACGTCAAGCTTTTatcttctgtttttgttttgtgtgtattcttactctatttttatttatttttttgtattaaaatgttcctcCTAAAACTTCTTGGGATTGGtcgtatgtaataatatatcataatgtAATGCCATTTTTTCCAGGCACCATCAAGTAATGGTAAAATATGACACGAGAGCCGGAATTAAAATTAACTGTTGACTTTTTGAAGGATACGGCTTTCTCTGGACTTTCCAGTGTTTTAATATGCACTTCTAATCTAATCTTACCTGTAATGCttgcttttctttatttgtagCTCGTGTAGCTGTAATATCCTGTAGTCCATGAGCTAAAAGCCGGTTTGTACTCGGATGCCGCTGCGCCGgagaagtgcttttttttttaatatttgtattgtattgtatttgtattctACTGACAGCGGTGGAAAAAGCTTCACCTGTAAACCGTGTTAATTTCATCTAACagattctctttttttaaccttttgaaATCTTGGAAAGGTCACACTGTTATGCTTGTAATGCtttcctttttgtcttttaattttcaTCGATTCAAGGTCGCGCCTTAAATGTTATGATTCCacaagtttttaatttaacactaTTGTATTTGCTATCATTCAATTTCGAAGTCCTGTCTTGTCTCCTTATcgaatttattaaagaattgGGATTCCTGTACATTTTATGAGTTTGCGTACTTCCCAAGCGTAAttgctattttcttttttgtttttcagatggaCGAGCAAATCGAAAGTCAACCCTGAGAGGAGAAAACAAGAGGGCCAGACTTATTAAATATGGAGTTGATCCACACGTTGCTACACTTTGGTCGCCATTTATTTCACAAGTTCGTTTCAAATCTGAGGTTGCTTTGAAGGACACACAATAAAGAATATTTCAAGTGTTATTTCCAAAACTATGACGTccagaatatttgtttttgtgtttaatttgttGTAGCTTGTGTACGTTTCTAATCGTATTCCCTGCTATGTTTGCTcttaggcgtttctgtgtcgaGTACGGTGAACTATAGAGAGCCCAAatcatttagaaattatttgTATACAGGCCTATTAATTTATTGCTTACAAGTGCGTACATGGCGTAGGTcgtttaatattcatttcatattGCAGTATTTTGCTACAGAGTCATGTAAACCATTggaaagtacaaaataaagtgtatgaATCTT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110304 lncRNA downstream 13718 3587435 ~ 3587894 (-) True G74551
TU110262 lncRNA downstream 67896 3309787 ~ 3533716 (-) True G74533
TU110268 lncRNA downstream 146618 3450537 ~ 3454994 (-) True G74537
TU110147 lncRNA downstream 552094 3049232 ~ 3049518 (-) True G74459
TU110143 lncRNA downstream 711664 2889445 ~ 2889948 (-) True G74455
TU110345 lncRNA upstream 91817 3699605 ~ 3700769 (-) True G74574
TU110414 lncRNA upstream 172271 3780059 ~ 3834370 (-) True G74614
TU110406 lncRNA upstream 213603 3821391 ~ 3824596 (-) True G74609
TU110425 lncRNA upstream 219337 3827125 ~ 3828028 (-) True G74624
TU110415 lncRNA upstream 223814 3831602 ~ 3832092 (-) True G74615
XM_043249839.1 mRNA downstream 6791 3591550 ~ 3594821 (-) False mat2al
XM_043249838.1 mRNA downstream 6793 3590267 ~ 3594819 (-) True mat2al
XM_043250572.1 mRNA downstream 15106 3574296 ~ 3586506 (-) False snx30
XM_043250571.1 mRNA downstream 15106 3574296 ~ 3586506 (-) True snx30
XM_043251049.1 mRNA downstream 223828 3337339 ~ 3377784 (-) True LOC122353137
XM_043250476.1 mRNA upstream 179 3607967 ~ 3612283 (-) False hnrnpdl
XM_043250477.1 mRNA upstream 179 3607967 ~ 3612283 (-) False hnrnpdl
XM_043250475.1 mRNA upstream 179 3607967 ~ 3612283 (-) True hnrnpdl
XM_043250481.1 mRNA upstream 9727 3617515 ~ 3625783 (-) False tmem150c
XM_043250482.1 mRNA upstream 9727 3617515 ~ 3625783 (-) False tmem150c
TU110254 other downstream 261683 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1404301 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2113604 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 2113697 1483399 ~ 1487915 (-) True nrarpa
XR_006251921.1 other upstream 297826 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 297826 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 2930746 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 3020637 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 3020642 6628430 ~ 6631157 (-) False sprn2

Expression Profile