RNA id: XM_043250477.1


Basic Information

Item Value
RNA id XM_043250477.1
length 2199
RNA type mRNA
GC content 0.43
exon number 8
gene id hnrnpdl
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3607967 ~ 3612283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTCGTCACTGATCTCCGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGAAGTCTTTGACCTTTTAAATCCACTGTAATATAATCAGTTACGTAGCAAGCGTCGGATCAAACTAAACATACTCCAAAATGCAGGCAGAAGAGCAAGGTGACTTCAGCACCGACGAGTTTCCAGAAGGCTCCAAAATAAACGCGAGTAAAAATCAGCAGGATGACGGgAAAATGTTCATTGGTGGACTCAGTTGGGACACAAGCAAGAAAGACCTTTCTGACTACCTTTCCAAGTTTGGAGAGGTCCTCGACTGCACCATCAAAACAGACCCCATGACCGGACGCTCCAGGGGCTTCGGCTTTGTGCTCTTCAGAGATGCTGAGAGCGTTGATAAGGTGTTAGAGCTGAAGGAGCACAAGCTGGATGGGAAGTTGATTGATCCCAAAAGAGCCAAAGCCATGAAGGGCAAGGAGCCCCCCAAGAAGGTGTTTGTCGGCGGTCTGAGTCCAGACACATCTGAGGAACAAATCCGGGAGTACTTTGGAGCTTATGGAGAAATTGAAAACATTGAGCTCCCCATGGACACCAAAACAAACGAAAGGCGGGGATTTTGCTTTGTGACATACGTTTCAGAGGATCCCGTTCAACAGCTCCTGGAGAACAGATACCATCAAATTGGATCAGGAAAGTGTGAAATCAAAGTAGCCCAGCCTAAAGAAGTTTACAGACAGCAGCAGGGCAGAGCGGACCGAGGATttggaggaggacgaggaggctTCCGAGGCCGTGGAAGAGGACAGGGCCAGGGCTATAATCAAGGATACAACAACTACTACGGCCAGAACTATGGAGGCTACGGCAATGGATACAACCAGGGCTATAACGGCTATTCTGGCTATGACTATTCAGGATACAACTATCAGAATTATGGCTATGGACAAGGCTATGATGATTACAGTGGTCAACAGAGCAGCTATGGCAAGGCTTCACGGGAAAGTGGAAACCATCAGAACAGCTACCAGCCGTATTGATAAAGTGGCTAAACACATTGACGTTCATGCGGGGACTTCATTGCAGGCCGTGTGTCACCTGACCACGACATTCTCTGGGCGTCGCACATAGCGGGCAGAGAGCACGGCATGCACGAGAAAGCGCTGTCCTGTGGTATGGTCTCTTCAAACTTCCTGTACCAgcgtaaaacaaacaaaaagacaaaggaGATTCCCCCATTTTCCTTAAGTTGTTGGTTTTCGTTAACAGttccaaatgtgttttttccagGAATTTATTAACTTAACCTAAAAGTGATTCATAACTGCTTCATTGTTGTATTCTCTTTTTCAATTGTAGTGCTCTTGTATTTCAGTTGTGGAGCTTCAgtgaattattctttttatttctttggtttCAGTCACACCTCCCttgtataaataattgcataaacTCTCATAATGCTTGCTTTTTCTTTAGAGGCCATAGAGAACTTCAAATGGGTACACCTCAAGGCTTTTTCTTAAGCGTAGCCTTTTTAAAGATCATATGTAAAGTGGGTTTGCCAAGCCATTGAAAGCTGACAAATCTGTGGTAGACAGATGAAACCAACTCACGTATTGGCTAAATGCAAATGACAATTTTCGGTTTAAAGGGGAAGACGTTTGGGCTCGCTCCTTGATTGGTCGACCAACCGCCTGGAGCTGAAGCTTTTGCTGTTTTGTCAATCTAAGACGTCGAACATATGATCTTTAATCTTTAATGATGGTTTTCCTAGTTTAAAATCGACAGCTCAAGAAGTTAAACACTGAAACATGGacgtgctgttttttttccttttctttaacCTGTCCAAATCTGAGTCATTCATCTTGCATATCTTCTCTTGTAGGTCGGCAGGCTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGGATTCCTGTCCttaaacaactatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttattcggTCCTGTGGGGACGAATTCAGTGTCTAACCTTGTAAATAGCGAGGCGTTTTGTTTCCAAGTTTGTCTTATTCCGTGCTTTGTTCAGATTGAACCTGTAGGTTTTGTGCTGATGTGTTCTTAAGTCTTGAATAGAAAAAGTGtcctttattttgtattttagttctTTTCCTGAAGGTTTTTGGATAAAGGGATTAAAAATTGAGAAGAAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110304 lncRNA downstream 20073 3587435 ~ 3587894 (-) True G74551
TU110262 lncRNA downstream 74251 3309787 ~ 3533716 (-) True G74533
TU110268 lncRNA downstream 152973 3450537 ~ 3454994 (-) True G74537
TU110147 lncRNA downstream 558449 3049232 ~ 3049518 (-) True G74459
TU110143 lncRNA downstream 718019 2889445 ~ 2889948 (-) True G74455
TU110345 lncRNA upstream 87322 3699605 ~ 3700769 (-) True G74574
TU110414 lncRNA upstream 167776 3780059 ~ 3834370 (-) True G74614
TU110406 lncRNA upstream 209108 3821391 ~ 3824596 (-) True G74609
TU110425 lncRNA upstream 214842 3827125 ~ 3828028 (-) True G74624
TU110415 lncRNA upstream 219319 3831602 ~ 3832092 (-) True G74615
XM_043250473.1 mRNA downstream 179 3601612 ~ 3607788 (-) False hnrnpd
XM_043250474.1 mRNA downstream 179 3601612 ~ 3607788 (-) False hnrnpd
XM_043250472.1 mRNA downstream 179 3601612 ~ 3607788 (-) False hnrnpd
XM_043250470.1 mRNA downstream 179 3601612 ~ 3607788 (-) True hnrnpd
XM_043249839.1 mRNA downstream 13146 3591550 ~ 3594821 (-) False mat2al
XM_043250481.1 mRNA upstream 5232 3617515 ~ 3625783 (-) False tmem150c
XM_043250482.1 mRNA upstream 5232 3617515 ~ 3625783 (-) False tmem150c
XM_043250480.1 mRNA upstream 5232 3617515 ~ 3625783 (-) True tmem150c
XM_043250282.1 mRNA upstream 31786 3644069 ~ 3663881 (-) True sec31a
XM_043250199.1 mRNA upstream 231409 3843692 ~ 3879520 (-) True pam
XR_006251926.1 other downstream 179 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 268038 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1410656 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2119959 1484374 ~ 1488008 (-) False nrarpa
TU109556 other downstream 2120052 1484374 ~ 1487915 (-) False nrarpa
XR_006251921.1 other upstream 293331 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 293331 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 2926251 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 3016142 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 3016147 6628430 ~ 6631157 (-) False sprn2

Expression Profile