RNA id: XM_043250490.1


Basic Information

Item Value
RNA id XM_043250490.1
length 4960
RNA type mRNA
GC content 0.49
exon number 20
gene id aak1b
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15931955 ~ 15958445 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCGGTGTGGTTTCCGGTTAGCTGGCGCATCTGCAGCATCCGAAGCCGCAGACGAGAAACGCCATGAACAACACGCTCGTTTCTGCCTGAATTTGATTCTGTTCGATTAAATTCAAACCGCATCCGTTCACCGTTCACCGGCAGGCCACCGGCGGAGCGCGCAGATGAGATGTGTCACGCGACCGAGCGGGCTTTGCAGGAATGCTAGCGTTAGCGCCTAGCTGAGTATttgttgaatttaattattattttttcatcgAACAAGAGGCGATTTGGTATGCTTGCGGACGTTTTACTAACGAAATAATCTATTATTCTACTTAATATCCGCATGTCATCAGTTTTTTCTGCGCAAGGCGGGTTGTTTTCAGAGCTTCTAATGAGCTGCACAGCTGGCTGATGATGGAGAGTTTGACTTTCAGCCATCAAAACAATAATTTCTCTCCACTCCACGTTTGAAGGTTAATTTTTTAACAGGgcttaaatgtttacattaatttcAGCCGGATTTGAGTATTTATATCGTGATACTGGCCCGTGTCCTGTGTATAGACACTAGACAAACACTTTAATCATATCAGGCCATCATTGATTGATGCTCTTTATTTGGATATACTCAGCTCTAATGTATTAATTTggcacatatacatatattttttgttgctgtACGGTTCATTTAAAGCTGCGATCAGTTGGGCTTCGAGTCCATGTTTGACAGTCACAGCTGATCTAGACCTCTGGCACCAGAACAACCAACCCGCTTCGGTTTCTTAAAGACTCGCGTAAGCAGTTAAGGGATCTTTGATACGTCATGAAGAAGTTCTTTGACTCCCGGCGGGAGCTGGTGGGCTCTGGACCCGGTTCTGGAGGTGGAGCTGGAAGTTCTGGATCCAGCAGCAATGTCGGTGGGAATTTTATCGGACGGGCTTTCACCGTTGGACGACACCAGGTCACTGTAGAAGAAACTCTGGCAGAAGGTGGCTTCGCAATTGTCTTCCTGGTGAGGACCAATCAGGGGGTTCGGTGTGCCCTGAAGAGGATGTATGTTAACAATGAACATGACCTGCAGGTCTGCAAACGTGAAATCCAGATCATGCGGGATCTCAATGGTCATAAGAACATCGTCGGGTTCCTGGACTCCAGCATCACGGCTGTAGGAGGTGGAGATGTGTGGGAGGTTTTTATTCTCATGGACTTCTGCAGAGGTGGTCAAGTGGTGAACCTAATGAACCAGCGTCTGCAGACGGGCTTCAGTGAACAGGAAGCACTCCAGATCTTCTGTGATACTTGCGAAGCTGTGTCTCGTCTGCACCAGTACAAAACTCCCATAATCCACCGGGATCTCAAGGTGGAAAACATCCTGCTACACGACAGGGGACACTACGTTTTGTGCGACTTTGGTAGCGCCACCATGAAGTTCCAGAACCCCCAGAGCGAAGGAGTGACTGCGGTGGAGGACGAAATAAAAAAgtACACTACACTTTCCTACCGCGCTCCTGAAATGGTGAATCTCTACAACGGCAAAATCATCACCACTAAAGCAGACATCTGGgcAATGGGCTGTCTGCTTTACAAACTCTGTTTTTTCACATTGCCCTTTGGAGAGAGTCAAGTGGCCATCTGTGATGGCAACTTCACTATTCCAGACAATTCCCGTTACTCACAGGACATGCACCGTCTCGTTCGGTACATGCTGGAACCGGACCCTGATAAGAGGCCTGACATTTATCAGGTGTCCTATTTTGCTTTCAAACTGGCCAGACGGGACTGCCCTGTCCAAAACGTCAAGAATTCTCCCATTCCTGCTAAACTTCCTGAGCCAATCCGAGCTAGTGAAGCAGCCGCAAAGAAGAGCCAAACACAGACTAAGGCGAGACTTACAGACCCCATTCCTACCACTGAAACCTCCATCACCCCGCGTCAGCGGCCCAAAGCAGCACAATCCCAGTCTCAGGCACTAGGGGGCATTTTGCCCATCCAGCCTGCTGCCCTGACCCCACGCAAGAGAGCCAACCTGCCCGCTGGGGCCGCCCAGCCGATAGCTGTCAGCGTAAACTTGGCTCAGCCAGCTGCCGCACTACAGTCTCAGAAAGCCCAGGCATCTCCAGCCCCTCAGCAGAAAACGCCTGCGGCCCCTGGCCTTTCCCAGACTCCTCCCTCGTCCCCAAGGACGGCCcagaaggcagggcacaggcgCATTCAGAGTGATGTCACTCACAGCGCTATGTTCGGTGTTCCGGTCAGCCAGTCCACTCAGCAGCTGCAGGCGGCCACAGCAGAGGCCAGCCTTAACAAGTCAAAGTCAGCCAGCGCCACCCCATCCAACTCTCCCCAGTCCTCCCAGCAGAGTGTGTACCAGCCTGCCCAACAGGGCAGCACGTCTGTTCCTCAAGCTCCTGCCTCAGCCAGCAGTCTGAAAAGCCCCCCTGACCAGCCCACCTGGAATCCCTTTGGTGACGACAATTTCTCCAAACTTACAGCCGAGGACCTGCTCAACAAAGACTTCACCAAGCTAGCTGATGAACCTGTTGAACCTCTGATTGACGCTACTGAGAGTCTAATTCCTGGGCTGGAAGCTGCAGAACCTGCTCCTCCGTCCACTGCTGAAAGACCTGCTGACATTCTGGGCTTAGAAACGGGAGCTGGTTTACTAGCTGTGCCAGAGAAGCTGATAGAGGGCCTGAAGTCTCCAGATACTTCTCTCATGCTGCCTGATCTACTGTCTATGGCTGACCCTTTCGGCAGCTCCATGGATGACACTAGAGATGCTAAAACAGAAGTGTGTTTGGACTCTCTGATTCCTGGCTTGGAGCCCCCTCAGGCTCAGCTGCACCCTGTGGAGGCTGAACCAGCATTATCAGCACTGGCAGACCCTTTAATTGGAGATGACTCCTTGCTGGGCTGTTCTCTCCCCTCTGCCTCTGTCTCATGTCTGGATGACTTTGCACCTGTCTCAGGAGCCTCCTCCCAGAATATATCAGCTGCAGACTCCTGTTTGATCTCAGGCTTTGAGCCTCCAAGCGCTGAGATGACCAATGAAGATGAATTTGACCCCATACCCGTACTGGTCTCCAAAAACTCTCAAGATGATCTGCCTAACATCAACGGCTACGACTCTTCATCGGGAGCCAGTAACATCCAGAGCTCAGAGGTTCCTGCAGAAGAAGACGAGGTTTTGCACACGTGCAGTGGCTCAAAGCTTCTGCTGCTGGACTCCAAACTCCTCAACACTACATCTCTTAAACTCTCGCCATCGTCCTCCCCTGATGTCTTCTCAAATGCTCCCTTCCCTGGGTGCGGACGAGACGGTAGGGACATCTTCACCGGCGCGCCATTTCCTCAACTTCAGAGAGCTCATACGCAGCCTGACATCTTCCTCCAGGCTCCATTCTGCAGGAGGAGCGATCTGTCTGGGACGCAACATGTAATGAGGTGCTCGAATGGCAATGAGCCCATCCTGCCCCATCCACCCGTGCACAGTCAAATACGGTTTCCCCATTGTGCTGAGGCTCCGATGCCCCAGCAGCCCATTGCCGCCCACCGCGTGGTCTCCAGCGTTGGCCAGCAGGCGGCCATAAGCTCCGTCCCCGTTGGCCCACTTCATTCATGGACGGTAGGTGTTCGAGCAGTGATGGACCCATTCCTGGCGGCCCCTTTCCAACCTCGGGGCCCACTGGGAAAGCCTTAAGCTGGTCACACACTAGACTCCTTTCAAATCTAAAGATTTTAAAACCATGGGAGATCACAGACACAAAGGCAGTTTCTACCGTTTTTCAGCCTTATTTGACCAGACTGCTAGACCACACACTTGCTGTGACTCGAAATCTCACGGAGACACGTGAGATCAAACGTGACtagggaagaaaaacaaatgaagaactATTGCTGGTTCACGGTGGAAAAACTAAGCAGATAAATAATCGTAATGACACCACACGCAGAACCGGAATTCACTAGATGTTTCTAGATGAGTATCTTTgctgaccctggaacaacattgtgattaaccagatttgaagaaccagtttatagtttttgtgaagtttaggtttACACTCAAtggtacatcagtgtcatttatctctcacttcctctttttttagGTGTGgggaaaaatgtttgtattaaaatgttgttccatgGTCAATAACATCATGAAGTGCAACACCACACAATAGAGGACGCAAATCAGGCTTAAAATTTACCCAGATCTTCTAGTGTGTGCCCAGCCTTAATGTTTGAGAAAGTTGTTAGCGCCCCGTCCTGCCGCCCCCGGTTCTTGGTAGTATCTGTGGAGGAAGCAGATCTGGCGTAGTCCATCATGAGACGACTACTTCAGTCTTTGTGACGCCTTCTGGCATCACCGCAGCACTTTAGCTCAGCTCCACTACGATGATCCTTCTCTGTGCATCACTCCACCAGATGTTAAGAGAGCGGTTTCATCTTTTGATTATATGTATTCGTCCATTTCTTTTCGTTTGTATGCGGTTTATATGAGCTTTTTGATATCATACGtagtgcttttattttcttttgcattgAGTCCAGGATTAAGAGGAcgtaaaatgtgaaaatgatggAAGTTTGTTACTCTGTTTACTAGTGTTTTTTGTCTAAGGGAGTGGCAGAAGGGACTATTTAATGGTTTTTTAGGCTTTCTGAAGTATAACTACCTTTTTGATTCTCAAAGCTGGCAGGGTTGCGTTAAAGCCTTATGACAGGTAAAAGAAAAAGCTGGAGtcactttttttgtgctgtttttgtgcttttcttgAACCCAAGGTACTGTAGGCATTTGTAATATGGACTCAAAAAGAAACTGACACAACAACACCTGTTGAGGTGAAACCATTGAAGCACTTTTACAGTCTGTAATCGTGGATTTAGTATTTTAGCTATATTATAATCTGCTGTATATTCACTGTATATTCCTTACATGATATATCCTTTGTGTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115098 lncRNA downstream 304 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 3638 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 4457 15927186 ~ 15927498 (-) True G77830
TU115104 lncRNA downstream 10595 15920921 ~ 15921360 (-) True G77827
XR_006251966.1 lncRNA downstream 14013 15915048 ~ 15917942 (-) True LOC122353198
XR_006251962.1 lncRNA upstream 140550 16098995 ~ 16101344 (-) True LOC122353141
TU115278 lncRNA upstream 214033 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 220155 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 231089 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 231089 16189534 ~ 16193540 (-) True LOC122352611
XM_043251156.1 mRNA downstream 34723 15892644 ~ 15897232 (-) True npffr1l1
XM_043250879.1 mRNA downstream 41465 15872490 ~ 15890490 (-) False bmp1b
XM_043250878.1 mRNA downstream 41465 15872490 ~ 15890490 (-) True bmp1b
XM_043250587.1 mRNA downstream 67425 15862177 ~ 15864530 (-) True pcna
XM_043249875.1 mRNA downstream 81963 15847789 ~ 15849992 (-) True LOC122352473
XM_043251108.1 mRNA upstream 31148 15989593 ~ 15993972 (-) False brf2
XM_043251109.1 mRNA upstream 31148 15989593 ~ 15993972 (-) True brf2
XM_043251107.1 mRNA upstream 31148 15989593 ~ 15993971 (-) False brf2
XM_043251111.1 mRNA upstream 31148 15989593 ~ 15993969 (-) False brf2
XM_043251112.1 mRNA upstream 31902 15990347 ~ 15993969 (-) False brf2
TU115089 other downstream 34857 15893683 ~ 15897098 (-) False npffr1l1
TU114910 other downstream 573723 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 642283 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 824203 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1342056 14569361 ~ 14589899 (-) False vwa3a
TU115119 other upstream 58226 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 72082 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 160341 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 160507 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile