RNA id: XM_043250499.1


Basic Information

Item Value
RNA id XM_043250499.1
length 2177
RNA type mRNA
GC content 0.44
exon number 8
gene id eva1c
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13164709 ~ 13169215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAATCAGTTTCTGATTTCGAGAAACCACCTATTACTACTTATTTTCTCACCGGGGACCTTAAAATCGCCAGCAACGGAGTGAATATTGCGAATGTCGCCGCTTCCAGGCACCACTGACTTGTTGCGCACTTGTTATTTCCCTATAGGCTTCCCTCCGCGAGCGCGTGCGTCGCTTTGAAATGTTCTCTTTTCGTCTCGTCCTCTGATTTCTCTTTAATCGCGATTTAGAGGGGTTCGCTTCTTTAGAGTTTGGCTCCAAAGGACCGGCATGTCAAAGTCGCGGTATGAAAAGCTACTTTAAGCCGGTCGAAACTCTCTGGCAGGTGAGGGAGACGGACGGACGGGAATTCCTGACAGCGTTTCTCCAGCGCGCGCTTGAACGCACGCGGCTTTGATGCAGGAATAATTGAAGGATTTGAACATGATCTCAGCGCAGCACCTGAGAAGCTGCCGGGCACCTGGGCTGTGTGTTCAAATACTTTACAGCGTTCTCATTCTGTGGACCAAAGAAATGGACGGACTGTCAGATTTCTCAAATTATCTGTTTAGGATCATCAACAGTCAGTCGGCTCAAGCCTGTGATGGAGATCTCCTGCTCCTCAGGTGTCCACGACACTCCACCATAACTATCCAGTCTGCATTTTACGGACAGAGCACAACCCTTCCCGGGATCATGCCAGGAATGAGATGCCAATGGCGTAATCACAGCTGTTCCGCTACCACAGCACTGCAGAAAGTGCTGTCTGAATGCCAGGGTCATAGAAATTGCCAACTTCTGGTTAATCATCAAGTCTTTGGCAGAGATCCTTGTCCTGGAACTCCTAAATACCTCCATGTATCATACAGGTGTAAACCTACAGAGCACAAGAAGAAAATAACATGTGAAGGAGAGCGACTTCTGCTGCACTGCAAGTATCCAAAAGTGCTGAATATCTACTCTGCTGTTTACGGAAGGCAGCTGGAAGAGGAAGATTTGTGCCCATCAGAGAAACAAGAACCTCCACCATTtgAATGTCTTTTTCACGGAGCCGTTGATGTGGTATCCAACATCTGCTATGGAAAACAGAGGTGTTTGTTTACTGTAGATgaagaacatttcaaaaaccCCTGCCCTCCTGGAACAAAAAAGTATATCACTGTCCTCTATGCATGCGTTCCGCAAAATTTACTGAAGGAGGCTGATCCCAGCAGTTTCCAAACTACCTCAGTTCCCAACCAGAGCACCAAAAAAGGGGAACACCCAGTTATCAGAAGTTCAAAGTTTCCAGAGAACAAGATTATTGTCAGCAATTCTTTAATGGCATATGGCTACATAACAgagcATCCAGAGATGGCAGGACTGCTCTTCACATCAAGTGTTTGTGTGGGACTTCTGATTGTTCTAATAGCCGTTTCAACACACCTATCCTGCAACAGACATCTAAATACAACTAGAACTTTCAGGAGGAAGAATACAATAACTAATTTGCAAGAGGAGAAGCCAATGAACCAGGATaatgatgaagaggaggaaaaTGATGAGAAAGGGGCACTATTGGACAGCACTAACCTGTCAGAGATTGGCAGGAAAGTGTATTGCTGGGAAGATGTGACGTACACCACAGAAGCAGCAGAGATGATGGAGAGGATCGAGCGCAGGGAGCTTGTCATTCAGGAGATCAGGATGAACTCATACCTCAATGGAAATACATGCGTTCTGCATTCATACATGCCAACTATTACACAGAATGTGCAGTAGCTGTAGTTTCAGCCAAAAGAAGTGggcattttgaatattttctattaccaaaacactaaaataaaggtGAAGTGTCTTTTCAGAACACTCCCCTCACTAACTCGCACTATTGGTTCAGCTAATTTTACTGTTGTCTGGGACGTTACACAGCATTTTGATAACATCACAGATTTACTGTGGAATCAGCCtacaagaatttaaaaaaagctatgaAAGATGCATTTTACCATTCAAAATTACgcacttcacctttaaagacACGGTCGGGTTAGAAAATCACTTGGCACAATGATATAATGGCACAAAACAAGAAACACTTGATGCGTTTTGCTGTCTCAGTGAGGGTGAACATTATTATTCTGTTCTAAAATGATTGTATTCgttttttgtattcagtttttGATAAATTATTGCTCTGTTAAACACttgataaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114167 lncRNA downstream 61655 13021653 ~ 13103059 (-) True G77153
TU114171 lncRNA downstream 129129 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 283979 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 286061 12874551 ~ 12878653 (-) True G77135
TU113780 lncRNA downstream 485496 12679007 ~ 12679218 (-) False uvrag
TU114230 lncRNA upstream 41404 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 143982 13313194 ~ 13315574 (-) True G77220
TU114273 lncRNA upstream 159430 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 317055 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 331591 13500803 ~ 13505849 (-) False dclk1a
XM_043250501.1 mRNA downstream 3195 13156144 ~ 13161519 (-) True si:dkey-18a10.3
XM_043250502.1 mRNA downstream 8626 13151955 ~ 13156088 (-) True il2rga
XM_043251152.1 mRNA downstream 65844 13094583 ~ 13098870 (-) True ska2
XM_043250738.1 mRNA downstream 80462 13071391 ~ 13084252 (-) True LOC122352956
XM_043249936.1 mRNA downstream 93997 13060712 ~ 13070717 (-) True prdm15
XM_043250494.1 mRNA upstream 9374 13178586 ~ 13186191 (-) True hunk
XM_043250014.1 mRNA upstream 140320 13309532 ~ 13311075 (-) True zar1l
XM_043250735.1 mRNA upstream 150663 13319875 ~ 13323889 (-) True rfc3
XM_043250602.1 mRNA upstream 323061 13492273 ~ 13533042 (-) False dclk1a
XM_043250601.1 mRNA upstream 323061 13492273 ~ 13533039 (-) False dclk1a
TU113815 other downstream 375624 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 1959488 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 369517 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 474079 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 636907 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1033050 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1033050 14202262 ~ 14202837 (-) False G77440

Expression Profile