RNA id: XM_043250514.1


Basic Information

Item Value
RNA id XM_043250514.1
length 2888
RNA type mRNA
GC content 0.53
exon number 24
gene id supt20
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13574431 ~ 13588126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGGCTGCTGTGAGTTTTTTTCATTGAAGGCACTGGAACATTTATTCCGCTTCTTGCTTTGGATTTCCTGCCTGTGGTGATGCAACTCGATTGGGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACGCAGCAACCACAATGCAACAAGTCTTAGAATATGCATTGGATCGGGCTGAGTACATTGTTGAAAGTGCTCGTCAGCGACCGGCGAAGAGACGAGTATCTTCGAGTGGAAGGAAATCCTTATATCAGAAACTCTATGAATTATACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGAAGAAATGTGAATCTACTAGAGAAGCTGGTCTCACAGGAGTCGGTCTCATGTCTGGTGGTCAACCTGTACCCTGGAAATGAAGGATACTCGCTTATGCTTAGAGGAAAAAATGGATCCGATTCAGAAACGATCCGACTTCGCTACGAAGAAACAGAGTTGCTGGAGTACTTGGATGCTGAGGAGTTGCCACCCATCCTTGTAGACCTTCTAGAAAAATCACAGGTGAACATATTCCACTGTGGCTGTGTCATAGCTGAGGTCAGGGACTACCGACAGTCTGGAAATGCAAAGATGCCCACCTACCAGAGCCGGCACATCCTGCTGAGACCCACTATGCAGACCCTGATCTGTGACGTTCATGCGATGACAAGTGATCACCACAAGTGGACACAGGatgataaacttcagctggaGAGTCAGCTGATTCTGGCCACAGCAGAGCCTCTGTGTCTGGACCCCTCCATCTCTGTCAGCTGCACCACCAACCGTCTGCTCTACAACAAACAGAAGATGAACACGCGATCCATGAAACGGTGTTTCAGGAGGCATTCTCAAGCAGCTCTGAACCGACAGCAGGAGATGATGAGCCACTGCCCTGCACTGCCACAGCTCAGACTCCTGGACTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCTTCCATAGACCTTAAGATCTCCAAAGCTGGAAATTGTGTGGACATGTGGAAACAGAGCAGTTGTCAGCTGACCGTCCCGTCAGAAATTGATGTGGAAAATTATGCAGTGGCAGAGAACTCTGTCAAACTAGATGACACTCAGCCCACTGTGTGGCCTGCGCAGGATGTGAGGGACGACTACATTTTCGAGTGTGAGGTAGGAGGTCAGCCTCAAAGAACAAAAGTCACTATCTTCCAGTCTATGGGGGACCCGCTGGTGTATGGGAAAATCTACAGCGCCAAAGACTCCAAATCAGAGGAGGATGTCACAGACCTACACCTCATTCATCCACCATTCCTCATAGGTTCAAAAACAGATGCTGATCGGTTCCTGGCGCAGTATAAGGAGGTGTATGAACGAGACGTGAAGTGTCAGGTGAAGATGTTGCACAACTCAGGCAGCGCAGGGTCCCAAGGCCAGCTCTCCCCCTCCAGGGAAAACGAGGCTGATGGATTCTCAGCTCTGGTCCAGTCTTCGGTTTTAGGAAAGGGCGTCAAACACAGACCTCCTCCTATCAAACTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGgtAACCCGTACAGTACACAGGCGTCAAGCAGCCATCTCAAGTGCCCAACCCCTCCACCCACAAAGAATCAGTCGCTCTCCCGGAAACACTCCATGGAGCTTGGCCTGCTGTCGCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCAAAGCCCtccacccccacccccaccAACACGCCGTGTTCGACGCCCCACCCTGCCGATGTTCAGAGTGCCACGCCTTCAGTAACGCCCACCCCTCAGGACCCCGCCCTTCCACAGCAGCCAACCCTGCTTACCCCCTTTGCCCAACAGCAGATGACCCTGCCTGTCATGACTATTCCCCTGCCCACGTCCAGCACCACATCCTCACAGGTCATGACAAACCCTGCAGGGCTCAACTTCATCAACGTGGTGGGCCCGGTTTGCAGTCCACAGACTCTGATGAGCGGATCTAACCCAATGCTGGGTTGTAGTCCTGGTACTCTAGCGTCTGGTATTCCCTTGAGTGGGCTTTTGCCCTCTGGTGGTCTTATGTCTGGAGCTCTTCCTGCCATGCAGCCTGCAGCCCCATCAGCAGGTGGGCCTTTTGGGCTGAACAACAGCCCTGGACTGCGACCGCTTAACCTTCTTCAGCTCCCAACAGGACCACTGATTTTTAATTCTCTACAGCAGCAGCAGTTGTCTCAGTTCTCCCCTCAGCAGCAAAGCAGTCAGTCGGCCACATCCAGCCCCCAGCAGCAGGGGGATGCGGCTGATCCGGGTCTGACAGCAGAACAGGGTCTGTCTGCACAACAGACGGCGGTCATCAATCTCACTGGAGTGGGGGGATTCATGTCTCCTCAGGCAGCAGTGCTGTCCCAGCTGGGTTGTGGTCTGGAGGGGTCCGGGCCAAGCCTACCGTCCCCGAGGCTCCAGCAACAGCACCAGCCACAGATCCAATTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGGGTATGGCAGTGGGGGCGGCAGCACAGGCAGCGCTGCCACGGCAACATTCCGCCAGCCAGCCAAAAAGTAAGAGGAAACGCAGCACGCCACAGCCCCTCCCCAAATCATGACCTCCAGCCGGACGGCACCAAATGGCACTGTGTTCAATCGATCGGCAGCATTGATGGACTGACTGGCTTGACCGGACAaaagttggatttttttttttttttttttttttttatgttcatagGGGTGCAGGAATTGCCCTCCTGACCTCaggacagatggatagatactGCGAGGATTTTTAGAGCAGGGGACCTTAGAGTATTAccgtattttttaaa

Function

GO: NA

KEGG:

id description
K21245 SUPT20H; transcription factor SPT20 homolog

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251929.1 lncRNA downstream 17774 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA downstream 17774 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA downstream 18239 13555556 ~ 13556192 (-) True G77294
TU114305 lncRNA downstream 68582 13500803 ~ 13505849 (-) False dclk1a
TU114322 lncRNA downstream 85598 13486267 ~ 13488833 (-) True G77284
TU114360 lncRNA upstream 81854 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 203203 13791321 ~ 13791934 (-) True G77349
TU114402 lncRNA upstream 211895 13800013 ~ 13800912 (-) True G77347
TU114407 lncRNA upstream 216365 13804483 ~ 13804892 (-) True G77351
TU114408 lncRNA upstream 216971 13805089 ~ 13805329 (-) True G77352
XM_043250522.1 mRNA downstream 3139 13566544 ~ 13571292 (-) True alg5
XM_043250540.1 mRNA downstream 8815 13558478 ~ 13565616 (-) True smad9
XM_043250539.1 mRNA downstream 8818 13558478 ~ 13565613 (-) False smad9
XM_043250538.1 mRNA downstream 8818 13558478 ~ 13565613 (-) False smad9
XM_043249961.1 mRNA downstream 28118 13544044 ~ 13546313 (-) False ccna1
XM_043251048.1 mRNA upstream 1191 13589309 ~ 13608152 (-) True c10h21orf91
XM_043251135.1 mRNA upstream 24026 13612144 ~ 13622868 (-) True ripk4
XM_043251134.1 mRNA upstream 40715 13628833 ~ 13638224 (-) True pom121
XM_043250764.1 mRNA upstream 55066 13643184 ~ 13654413 (-) False ypel2a
XM_043250763.1 mRNA upstream 55066 13643184 ~ 13654412 (-) True ypel2a
XR_006251934.1 other downstream 30816 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 785341 12782353 ~ 12789090 (-) True mogat2
XR_006251914.1 other downstream 2369205 11176569 ~ 11205226 (-) False LOC122352715
TU114352 other upstream 55173 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 218001 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 614144 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 614144 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 616298 14204416 ~ 14208006 (-) True G77441

Expression Profile