RNA id: XM_043250539.1


Basic Information

Item Value
RNA id XM_043250539.1
length 2773
RNA type mRNA
GC content 0.47
exon number 8
gene id smad9
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13558478 ~ 13565616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTCTTTTTGAATGGGATGATCCCTGTGTATGTCTGACGTCCTGGGATAGTTCCAGGAGCTGCGGATGAATTCCGCACGAAGGCACTGAGGCTCCAGTCAGACTGACGCCGCGGCGCTCGCTCCATCCAAACACACGCGCTGTACACCTCCGATCGGCGCGAGATCCGGCGTTCGGCTGTTTCGCGGAATTACCCGACCGCGTGGATTGTTACTCGACTCCTCACGTTAAGatcgTTTTCTGCATCGGAAAGGTTCGGCAGGAAAGGAGAGGACGAATAGattaatgcttttttctatATCCGCCTGTatcttaaagaaataaactgaGGTTCCTGGGTTGGAgtgatttaaaacagatttaccCAAAGCTCTGAGAAAAATCCATCACATGATGCACTCCACTACATCCATCACGTCCCTCTTCTCCTTCACCAGTCCAGCTGTTAAAAGGCTGCTGGGCTGGAAACAAGGAGACGAGGAGGAAAAGTGGGCGGAAAAGGCTGTGGATTCCCTCGTAAAGAAGCTCAAGAAGAAAAAAGGGGCCATGGAAGAGCTGGAAAAGGCTCTGAGCTGTCCTGGCCAGCCCAGTAAATGCGTTACCATTCCTCGGTCCCTGGACGGAAGGCTCCAGGTGTCTCACCGTAAAGGCCTGCCGCACGTTATCTACTGCAGAGTGTGGCGCTGGCCGGATCTTCAGTCCCACCATGAGCTCAAAGCGCTGGACTGCTGCGAGTTTCCTTTCGGCTCTAAGCAAAAGGAGATCTGCATCAATCCATATCATTACCGCCGCGTGGAGACGCCAGttctgCCCCCGGTTCTTGTACCACGTCACAGTGAGTTTAATCCCCAGCACAGCTTATTGGCAAAGTTCAGAAATGCTTCCCTACACAACGAGCCTCTCATGCCCCAGAATGCCACTTACCCAGACTCCTTCCCAGCGATGCCCTGTAGCTCATTCTCTTCATCCCCCTCCAGCTCTTTAAACCAGTCCCCGACCGCACACAGCTACCCCAACTCCCCCAGCAGTGGGACCGAACCTGGCAGCCCCTACCAAATTacagCAGAGACGCCTCCGCCACCCTACAGTATGATGGAGACCCCTCCGTCTGAGGATGTGAAACCAGGGGAATCCTCCAACACCAATAAACTCATTCTGTCAGCCCCGCATAGAGactTGAGGCCGGTGTGTTATGAGGAACCAGAATACTGGTGTTCAGTGGCATATTATGAGCTAAACAACAGGGTGGGTGAGACGTTCCATGCCTCTTCCAGAAGCATCCTCGTCGACGGCTTCACGGACCCCTCCAACAACAAGAACCGCTTCTGCCTCGGATTGCTCTCCAACGTCAACCGAAACTCCACCATTGAACACACTCGCAGACACATAGGCAAAGgTGTGCACTTGTATTACGTCGGAGGAGAGGTGTATGCAGAGTGTCTGAGTGACAGCAGTATTTTCGTGCAGAGTCGGAACTGTAACTACCAGCACGGTTTCCATCCCACCACTGTCTGCAAGATCCCCAGTGGATGCAGCCTGAAGATCTTCAACAACCAGCTGTTTGCCCAGCTGCTGTCACAGTCTGTCAATCACGGCTTCGAGGTGGTGTATGAACTTACCAAGATGTGCACCATCAGGATGAGCTTTGTCAAGGGCTGGGGAGCAGAGTACCACCGCCAGGATGTCACCAGCACCCCCTGCTGGATAGAAATCCACCTGCATGGGCCGCTGCAGTGGCTAGACAAAGTTCTGACCCAGATGGGCTCCCCACACAATCCTATTTCCTCCGTGTCCTAATGCACTACAGAACAAGGGGAATAAAGCTCTCCGATAGACTTTTATAGTGCCCCGAGACACATAATGctctttcttttgtgaaaatatCTTTTCATTGGATGTTTATGGTACTGCTATAGGATCATCCTGGAAATATGTACAATATCATTCTAAGTAAGCAGTGGTTAGATGAGTGTTgcaatgattttaataaagacaaaaacagtacTACTTCTTTACAGTACGTAGTAGCTGAGATCAATTCAGACCGAAACTCCCTAATAGGAAGCCAAAGGAATGTTTTAGGCGGGTACTTGATCAGGAGATGTTTTATTCGTGTCATATTTTGACTAATATGTATCTTCCATAacatttcatgttgtttttcatttgcgTTAGTTTTCGTGTtcttgtaatacaaaaaaaaaatcatttatttgtgcCTGTTTATTTTCCGACCTAAAAAATCCATAagtattaatgcttttaaagctGAAAACTGCACAAGATTGATAAAACTTCATTGGAACGCCTTCagcaatgtttaaaataataataaagccgATGAACAATTCTGTTTGCATGTTACTTTCAGATGTGGTCAAGATGTGGCAAAAAAGGTGGAACTAAAATCTAGCTTTCGTTGGTGACAATATTACAGATTAGATTAAGATCgccaacatttttgttttgatatcaGCTGCCATTTTATGTTTTCTATCGACAATTTAAAAAACCTAAAAGACAGGGGGGTTGACGAATGGTAGATGTTGCAGCTAAAGAGCTTGATGATGACAGAAGTACTTCAGATCAATCAGATCCTTGTCGGATATCCAAGTTTTTAGTCGATAGTCTCCACACCTTCGAGGATGGCTGTAGGTCACAGATGCTCACGGTTCTCACAGGAGTATGGAAAACTtccatttgtaaaaaatgtcattgaaaATGTGTCTGCATTAAATCGTTGACAGAATGAGTAAAACGTCTTCAGTAGT

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251929.1 lncRNA downstream 1821 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA downstream 1821 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA downstream 2286 13555556 ~ 13556192 (-) True G77294
TU114305 lncRNA downstream 52629 13500803 ~ 13505849 (-) False dclk1a
TU114322 lncRNA downstream 69645 13486267 ~ 13488833 (-) True G77284
TU114360 lncRNA upstream 104359 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 225708 13791321 ~ 13791934 (-) True G77349
TU114402 lncRNA upstream 234400 13800013 ~ 13800912 (-) True G77347
TU114407 lncRNA upstream 238870 13804483 ~ 13804892 (-) True G77351
TU114408 lncRNA upstream 239476 13805089 ~ 13805329 (-) True G77352
XM_043249960.1 mRNA downstream 12155 13544044 ~ 13546323 (-) True ccna1
XM_043249961.1 mRNA downstream 12165 13544044 ~ 13546313 (-) False ccna1
XM_043250606.1 mRNA downstream 14863 13538156 ~ 13543615 (-) True sparta
XM_043250608.1 mRNA downstream 20510 13533751 ~ 13537968 (-) False ccdc169
XM_043250607.1 mRNA downstream 20510 13533751 ~ 13537968 (-) True ccdc169
XM_043250522.1 mRNA upstream 931 13566544 ~ 13571292 (-) True alg5
XM_043250515.1 mRNA upstream 8818 13574431 ~ 13588126 (-) False supt20
XM_043250517.1 mRNA upstream 8818 13574431 ~ 13588119 (-) False supt20
XM_043250518.1 mRNA upstream 8818 13574431 ~ 13588118 (-) False supt20
XM_043250521.1 mRNA upstream 8818 13574431 ~ 13588118 (-) False supt20
XR_006251934.1 other downstream 14863 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 769388 12782353 ~ 12789090 (-) True mogat2
XR_006251914.1 other downstream 2353252 11176569 ~ 11205226 (-) False LOC122352715
TU114352 other upstream 77678 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 240506 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 636649 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 636649 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 638803 14204416 ~ 14208006 (-) True G77441

Expression Profile