RNA id: XM_043250564.1


Basic Information

Item Value
RNA id XM_043250564.1
length 2741
RNA type mRNA
GC content 0.46
exon number 13
gene id tacc1
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6543568 ~ 6563433 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATTTAACACTGAAGGACAGTGTAGTACCAGATGTGTACAAAAAGacacaaagaggaaaaaaaaaactagaactTGGCAAAATCAGGAGGGAGACTGAGTGTGGGCATTGGAGAGGACTTGAAAGGTTTCCCAGAAGTATCTCAGTTGACCTCCATCACAACCAAAACCCAAAACCTGACCCTGGACGAGAGCTTTCCTGAGGATGCACCTGCCCTGGTGGTGCGGCAAAACAGTGTGGACCCAAGCCAAACCCTGAAACTCAGGAACCAGCCTTTCTCTGCTGACATGGATGTGGACCAACCCGATCCTGACGAACCAGGAACAACAGATGAGACCAACACCTGCAATGGTCACATTGAAGAACCATCCTCCAAACCACAGAACAAGTCCCTCAAGCCTAGACCTCCTTCCCTCAAGGTAAAGGCACCCCTGAATGGTGTTGACCCCAACGAGGTGGATGATGATCCTCCGATACTTCCAAAGGGGAGCTACAATTTTGACCCTGATCAGTTTGATGATGCCATAAATCCATTCGCATCTGGAGGGTCCAAGTTGCAGAACTCTCCACCTGCCAATGCCAGTATTCCTAAATCAGAGTTGATGGATGAAATGCCTACTCAGCCAGTAATCTTGGATTTTGGACCTGATGATGCCGAAGCAAAGAGACCTCCATCCAAGAAGTCTGGAAAGAAGACAAGCAGCAAGCTGACTACTCCAAAAAAGCAGAGACCAAAAGCTGCAGAAACAGCAGCTCCACCTCCGGAGACATCACCAGAACAAGACCAATTGCCATTGGAGGACGTGGCTCCCATGAACGTTGATGATATTCCTATACCTAAAAAATCGTACAACTTTGACCCAAGTCAGTGGGATGATCCCAACTTTAATCCTTTTGGTGGAAACAGTAAACTTAATACCTCACCAACACTTCATAAAGGATCATATAATTTTGACCCTGATAACTTTGATGACTCTATCGATCCTTTGAAGCCATTAAAGATCTTAGGTGGAGGTGACAAGCTTAcggacaaacacaaaacagaggGAACTGTGGAGCAGTGGAAGAAACCAGGACAGTCTCCGAAGAAGAATAAAGACAGGATCATCACGACCACTGAGCAAGTGCGGTTTCTCTGTTTTCTATTGAACTCATGTAAAGTAAAGAAGTATGAGAATCAGTCCTTAGTCCTGGATGTCTGCAATCAGGAGAAAGACGAGCTGGAAGATCCGGCGTCTAAACTGCCCCACCGTGTCCATCATGCCACGGATGAGGAGAAGTTAGCCTCCACTGTTATGGGTCAGAAGGACGGGCCGGAGGAGTTTTCAGACTGCACCAAAAGCTCTACCAAGACTGCAGACGATCTGCCAGTGGGCATAACAGACCAGTTTGATGAGAAGGACCTTTCCTCTCCTAGTGAGAGTTTGTGTAAGAGTCAGACTCTGAGCTCTTCAGACAGTGAGACCATAGTGAAGATGAGTCCGGGGCTGGATTCAATCCCTCTCAGTGAAATAGATAAAGCAGCAGTGCTCACACTGATCAGAGAAGAGATCATTTCCAAAGAGATCGAAGCCAATGAGTGGAAGAGGAAATATGAAGAGAGTAGACTGGAGGTTGTTGAAATGAGGAAAATAGTGGATGAATATGAGAAGACTGTAGCTCAAATGATAGAAGATGAGCAGCGCAAGAATGTTGGATCTCAGAAAAGCGTCCACCAGTTAACCCTGGAGAGAGATCAGGCCCTCGCAGATCTCAACTCAGTGGAGCGCTCCCTTTCCGACCTGTTCAGACGCTACGAAAATATGAAGACCGTTCTTGAGGGCTTTAAGAAGAATGAGGAAGTGCTGAAGAAGTGCGCTCAGGATTACCTCACACGTGTGAGACAGGAGGAACAGCGTTATCAGACCCTGAAAATCCACGCCGAGGAGAAACTTGACAAAGCGAATGAGGAAATCGCTCAAGTGCGATCCAAGGCCAACGCAGAGAGCGTGGCACTGAACGCCAGCCTGAGAAAAGAGCAGATGAAGGCGGAGTCTCTGGAGCGGGCGCTCGAGCAGAAGAATCAGGAGATTGAAGAGCTTACTAAAATTTGCGATGAGCTCATCGCAAAATTGGGCACCACGGACTAAGAGGAAGGAGGATCTGCTTGCATTGCCCTGCCTGACCCAAACCCACCCCGACCAAGAACGCCGCTGGATCTCccattggggtttttttttttttttactttttggaaAGGAGTCATTTTTCCATGGGTCTGGGAGAAGAAACAAGATATGAGCCGAAGAATCAAATAAAAGAGTCCCAAACGTTTTTACAGGTTCATAAAGTGCTGATGCTGGACTTGCACCTCTATTTGGTGGTGTAATGTTTCTTGAAAAGGGTGGGAAAAACCACCCACATATCTGATTCTGATCTCATTTCTGCTGGCTGTTATGGCAGCTGTGTGTATGAGCGTTCGGGAGAGCCTCTGGGAGTGTGTCCAGGTGTAATGAAAAAGACATGGGATGAGGATCATGGGCCTCGTTCGTAGTTTACATGATCGCACTGCTGCTATTTGTAACAGAGGGAGCAAATCATATTATTTACAGCTTTTTAGTTGCATTACTTGCTTCGGAAAGTACTGTAGCCTGTGTAATTATCTGGTTATATATTAGAGGTTCTGATATAAATTTAAGGAACGTTCTGAGTTCAGTACAAGTTGACAGCACTTGTGGCGTGATGTTTATTGCCGTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111461 lncRNA downstream 161127 6380936 ~ 6382441 (-) True G75294
TU111465 lncRNA downstream 190684 6352535 ~ 6352884 (-) True G75297
TU111334 lncRNA downstream 266238 6272225 ~ 6277330 (-) True G75209
TU111311 lncRNA downstream 387792 6148920 ~ 6155776 (-) False G75191
TU111566 lncRNA upstream 93648 6645924 ~ 6648670 (-) True G75366
TU111662 lncRNA upstream 477717 7029993 ~ 7082458 (-) True G75429
TU111667 lncRNA upstream 526279 7078555 ~ 7079365 (-) True G75433
TU111681 lncRNA upstream 555482 7107758 ~ 7231920 (-) True G75445
TU111703 lncRNA upstream 575312 7127588 ~ 7137401 (-) False G75459
XM_043250141.1 mRNA downstream 2595 6538122 ~ 6540973 (-) True si:ch211-113d22.2
XM_043250136.1 mRNA downstream 5573 6515997 ~ 6537995 (-) True loxl2a
XM_043250137.1 mRNA downstream 11461 6515997 ~ 6532107 (-) False loxl2a
XM_043250138.1 mRNA downstream 11464 6515997 ~ 6532104 (-) False loxl2a
XM_043250139.1 mRNA downstream 44357 6494749 ~ 6499211 (-) True sfrp1b
XM_043250566.1 mRNA upstream 15004 6567280 ~ 6574724 (-) True ddhd2
XM_043250567.1 mRNA upstream 23145 6575421 ~ 6579948 (-) True plpp5
XM_043250568.1 mRNA upstream 23145 6575421 ~ 6579885 (-) False plpp5
XM_043250552.1 mRNA upstream 28345 6580621 ~ 6601391 (-) False nsd3
XM_043250558.1 mRNA upstream 28345 6580621 ~ 6601391 (-) False nsd3
TU111527 other downstream 2642 6538534 ~ 6540926 (-) False si:ch211-113d22.2
XR_006251921.1 other downstream 2630826 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 2630826 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 2935780 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 3203639 3337388 ~ 3339929 (-) False LOC122353137
TU111553 other upstream 76149 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 76154 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 625048 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 625475 7177751 ~ 7180821 (-) True G75454
TU111872 other upstream 973967 7526243 ~ 7528551 (-) False LOC122352929

Expression Profile