RNA id: XM_043250593.1


Basic Information

Item Value
RNA id XM_043250593.1
length 2667
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC122352867
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5038846 ~ 5045538 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAGTTAACACATGTGCAAGGAGGACACCAAAATAGAATAGACAGCAATGGATCCAATGATTGGTTGTGAGAAAGAGGCCCAGCAGAGAGGTGGGCATATAATTAATAACACTTTGACACCATaatctttcaaattaaattaaaatctgctGATGTATGCAAGGCCCATAAAGGGGTTTTGTTCAGGAGCAGACAAACATTACTCAATTAAACCGAGACGACGTCTTCCCGGGTGAACCGTCGAACAAAAAACATCTACACGGTGGTTTACGGTAATTCATCCCATGATTCTTTTCTGCCAAACGCTATGCTTTGTTTCTATCTTCATAAACACCAAAGGCGGCTCAACGCCATTGTTTGTTTGAGGCGCACGTAAACATCTGCATTGAGACAGCGCTAGAGCTGCCGGGTCAAAGGGCGAGCCTTTACATCTTTAAAGTGTCCCGTTAAAAGATGGACACCGCGAATAGCGCCGTGTTTCAGGCGCAGTTAACGTCTATCATGGAAACGCTAGCGAAAACAGCTGCTGTGCAAATAAGCAAACTTTTCGAGGAGAACGCGTCTCTTCTGCGCTTGGAGGTTACGCGGTGCACGAGCGAAAACGAGTGCctgaaaaagaaatgcagttttctgGAGAATGAACTTAGGTGTGCGCGGAAAAGCGCTGGGAAGGTGAGCAGGACAGAAGCTCCGTCGAGTCACTCTGGGCTTGCAGATGCTGGCCATCGTCCCGCAATCGACAACGTCTTCGGCAAGGAATGGTGCATGAACCTCTGGAGACACGAGGAGGCACATGTTGGAGAGCAGGAGGACACGCATCTGGGCTCTCCAGTCATCATAGGAGAGCCAGTAAACTTGCTTGAAGAGGAACCCGACATGATCATGATCAAGGAGGAGGCATTTGAAGATTGCTCTTCTGGGATAAACGAGGAAGACCAAGATAATCAGAGTGTGCAAGGCGCAGTCCAAGAGGAAATCAAAAAAATCCTCCCAGAGTTGGACCTAAACAAGCTTCAGAATGTGGTCAGTCATCTTTCGTTAGTGGTGGGTGTGGAGAAGACGGAGGACCTTTCCCTAGTAGAGGTGTCCGATCTTCAAGACTTTCTGGAGCCAATACAGTGTCGAAAACttgtaaaaacattcaaacaaagAGaATCCAATGGTCAAGCGGATGGAACATCTAACGAGATGACGTTCACTCCTTTATCATCAAACGAGTCCCTTCCAGAACAGTCCTTTATTCCCTCATTCATCAAATCCAGCTGGGTCAGAAGTTTCCAGGTTCCCTGGAACCGCATGCCAGCGGCTCTCGCTCAGGCCACGTCCACTGGAGAGAGAGCTCGACCAGGACCGAGAAGGGAGTTTGTTAGGCTCGTGGTGGCAGCCATGCAAGCCCACTGTCCGAACCCAAACTTAGCCGCTTGTGGGGAAGTGGCACGAAATATCGTGTCTGCATATCCCCTGACCTTCGGAGACATTTCTGAGGAAGGAGAACAGCTGGGAAACGGCTTCAGTTGCTTACAAAGACAGCTAAAAACTAGGGTGGAACATGTGAATAGAGATGTTATGGAGCACAGGATTCGTCGACCTAGAAGACCATCATCGAAAAGACCTGGACAACAGGACAACTACATAAGGACAAAAGTACGATGTAAAGTGGACAGTTACGGATGCATCAATTGGCAGCCGTCTTCCATCCCAGAAGGTGAGACGGCAGAATCTCTTGAAATGAAGAGGAAGGTTGCGGCTGAGATTTTTCAGTCTGCAGGACCAAAAGCTGCCGAGTTGCCCAACGTAGATGACTTAATGCAGCAGACGTATGTTTACCAGCGCCACATGATCAACTCATGCCCCCCTCCTACCATCAGTGAGATTGAGGGGCACTGGCCGTTCCTGTTCACCGAAAGAGGCCTCTGCAGGCACTTCAAAATCCTGACTGGGATTGACATCAGAAACCGCTTTAACGAAACTCTTCTCGTTAAATCCAAGAGAATACTGAACTATTTCGGCAGACAGAGACTGAAGTGGAACGGAGAGATCCAGAGCATGCTGAGCGAGATCGACGACGCCAATGCAACCGACAATAACAGGATAGCCATGTCAGCCATCCTGTTGATGATGAAATACTTTAAGGAAAAGGACAACGCTGTATTCATCTTAGCAGATGAAAACTCTACTAAGACGTCCATCGAAAATGAAATCAGCTTACCCGCGACGCCCCGGCTCATCATGCTCGgtGAGACGTTGCTGACTTCTTCAAAGTGGTTTGTCAGTATTGAAGGCAGAGTAACACATTCTATAGACGACCAGCTGGACTTTGCAGCAGCATTGTCTGTGTTCTTTGGGTGCTTCTATGCTTTTAATATCGAGTATGAGGAGTCAGCCAGTGCCACCCTGGAGCTTATTCAGAGtgaATGAGACCGCAAGTAATCTGACAGCAGgagtaataaaatcattttacccGCCATCTATAATCATGCCGCTGGTTAGCTTCTGGTTTGCCTGTGCACGGTTATGTTTTGTTGGAGGTTCTTCGTGAGGATTAATCCCGAGGGCACTAAATGTACCTCAAAATCAGGCACAAGTCGAAGGACGGGTTCGGCTGTTCAAAGGAAACCCCAAAACTTTAATACCCGTGTGGCTACATTTATGCAGAGGCTTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110831 lncRNA upstream 18045 5019196 ~ 5020801 (+) True G74889
TU110834 lncRNA upstream 18440 5019196 ~ 5020406 (+) False G74889
TU110833 lncRNA upstream 18440 5019341 ~ 5020406 (+) False G74889
TU110824 lncRNA upstream 36404 5000682 ~ 5002442 (+) True G74882
TU110811 lncRNA upstream 88989 4949549 ~ 4949857 (+) True G74873
TU110849 lncRNA downstream 28808 5073928 ~ 5074206 (+) True G74902
TU110855 lncRNA downstream 42160 5087280 ~ 5087591 (+) True G74906
TU110857 lncRNA downstream 52524 5097644 ~ 5098564 (+) True G74908
TU110863 lncRNA downstream 62665 5107785 ~ 5108114 (+) True G74914
TU110852 lncRNA downstream 71746 5116866 ~ 5117649 (+) False LOC122352404
XM_043250594.1 mRNA upstream 341 5035033 ~ 5038505 (+) True LOC122352868
XM_043250596.1 mRNA upstream 4362 5032154 ~ 5034484 (+) True LOC122352870
XM_043250597.1 mRNA upstream 4362 5032154 ~ 5034484 (+) False LOC122352870
XM_043250038.1 mRNA upstream 124231 4912471 ~ 4914615 (+) True hint1
XM_043250036.1 mRNA upstream 132578 4891590 ~ 4906268 (+) True ppp2cb
XM_043250595.1 mRNA downstream 1131 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250823.1 mRNA downstream 13377 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA downstream 14648 5059768 ~ 5067537 (+) True LOC122352997
XM_043249821.1 mRNA downstream 72729 5117849 ~ 5123373 (+) True LOC122352404
XM_043251132.1 mRNA downstream 287890 5333010 ~ 5357455 (+) True sppl3
TU110461 other upstream 538746 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 918399 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 991892 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 996152 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1344250 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 72731 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 76369 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 193308 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 199470 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 211718 5256838 ~ 5258823 (+) True G74965

Expression Profile