RNA id: XM_043250596.1


Basic Information

Item Value
RNA id XM_043250596.1
length 1306
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC122352870
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5032154 ~ 5034484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACGTAGGAGAAACAGCAGGAGAGCGAGCCGTCGGTGTAAGATGAAAACTGTGGAAACATTTCATCTGGCGTTACtgcgtattattattattattatcaaacgCGCGACTAGCTGAAGTGCACGAACAGCGCTCGGTTCCGTACGtgcatctataaaaaaaaaaagtttgcgaCTTTCATTTTTGATAGTTGTATGAAGATACTGGGAGATGCTGTCCACTCTCTCCTCTTTTCAGACTCAGTTAGCGTCCATCATGGAAGCGCTGGTGCAGACAGCTGTGTTAGAGATAGGCAAGCTCGTGGAGGTGGAGTGTGAAGTGTTGCTGTCGGAGGTCTCCCGCAGCCGCGGTGAGATCAGCTCTCTGAGGAGGACACTGAGGCTGATGGAGGTCCAGCCGCGGGAAAACACTGGGCAAACACCCACAGAGAGTTTGACATGTGTCAAGAGtGAACGTGGCCAAGAAGAGACGCACGGCCATTTGAACAAGTGTAGAGGCCCAAGAGAAGATCATCAAGACCAAGACAGTCCACAGCGGAGGTTTGAGGCAAGTACGGTGAAGCAGGAGCAACAGGAAGTGGATGTTTGGATTGGTCGAGACGACAGTGAAGCAGGAAGCCAGTGTGGCGAAGCCGTGAGCCTAATCAGGGATGCTCTCAAAACTGCTTCCCCCTCTACTTCCCCTGGCAGAGGAAGCAGAGAAAACGCGGCCGCGAGATTCCCGTCAACAGCAGAAGCGCCAGACGTGAACCGAGGCACCTCGCCGAACGGTGAACCGGACGCGCCGCGGAGTTTGAGCGCATCGGACCTCGCGAGAACAAACAGTGGCAGCGCTTTTTCGGCAGACAAGCGCTTCGTTTGCTCCTACTGTTCGAAGAGGTTCAGGTGTTTCAGTCAACTCACGATACATCAGCGGAGTCACACAGGCGAGAAGCCGTACCGGTGCACGCTCTGCGGAAAGAGGTACATTCAGAAAGGACACCTGTACACCCATCAGCGCACCCACACGGGGGAGAAGCCTTATCAGTGTTCGCTCTGCGGGAAAGGCTTCATTCAGAAATGCACTCTGGACATGCATCTGCGAAGtcacactggagaaaaaccCTACACTTGTACGAAATGCGGGAAAGGGTTCACGACCAAATTTAATCTTAACAAACACTTGTCGTGCCAGAGCTGCAACGGCATTAGTTAATGACGGTACGCTCGagtaaatgtaattgatttgcTCTCTTATGGTCACGGatcattaagaaaaatgtaataatccaCGTGGCGTCAGATCAGCATTAAAACCATGCCAGAA

Function

GO: NA

KEGG:

id description
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110831 lncRNA upstream 11353 5019196 ~ 5020801 (+) True G74889
TU110834 lncRNA upstream 11748 5019196 ~ 5020406 (+) False G74889
TU110833 lncRNA upstream 11748 5019341 ~ 5020406 (+) False G74889
TU110824 lncRNA upstream 29712 5000682 ~ 5002442 (+) True G74882
TU110811 lncRNA upstream 82297 4949549 ~ 4949857 (+) True G74873
TU110849 lncRNA downstream 39444 5073928 ~ 5074206 (+) True G74902
TU110855 lncRNA downstream 52796 5087280 ~ 5087591 (+) True G74906
TU110857 lncRNA downstream 63160 5097644 ~ 5098564 (+) True G74908
TU110863 lncRNA downstream 73301 5107785 ~ 5108114 (+) True G74914
TU110852 lncRNA downstream 82382 5116866 ~ 5117649 (+) False LOC122352404
XM_043250038.1 mRNA upstream 117539 4912471 ~ 4914615 (+) True hint1
XM_043250036.1 mRNA upstream 125886 4891590 ~ 4906268 (+) True ppp2cb
XM_043251097.1 mRNA upstream 144585 4866714 ~ 4887569 (+) False LOC122353166
XM_043251095.1 mRNA upstream 144585 4875973 ~ 4887569 (+) True LOC122353166
XM_043251105.1 mRNA upstream 156493 4869185 ~ 4875661 (+) True purg
XM_043250594.1 mRNA downstream 549 5035033 ~ 5038505 (+) True LOC122352868
XM_043250593.1 mRNA downstream 4362 5038846 ~ 5045120 (+) False LOC122352867
XM_043250592.1 mRNA downstream 4366 5038850 ~ 5045538 (+) True LOC122352867
XM_043250595.1 mRNA downstream 11767 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250823.1 mRNA downstream 24013 5058497 ~ 5067537 (+) False LOC122352997
TU110461 other upstream 532054 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 911707 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 985200 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 989460 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1337558 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 83367 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 87005 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 203944 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 210106 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 222354 5256838 ~ 5258823 (+) True G74965

Expression Profile