RNA id: XR_006251934.1


Basic Information

Item Value
RNA id XR_006251934.1
length 1945
RNA type transcript
GC content 0.52
exon number 8
gene id sparta
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13538156 ~ 13543615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTGACAAAGTAGGTACATAATTTCGTCGTGTGTCATGGGAGGGATATCAAACTTAACCGCGGACGTTTTCTAGTTGCCGTTTTTCACTTAAGGGTTGCttatatttacttttcttgGCACCAGAATGGAGTCACCAGAACCGTCTGAAATCCGCGCCATTCGTGAGAGCTATAAACAAGCCCTGCGGTGTCTGAACTCGGGGCTTCAGTATGACGAGGTGGGGAATAAGGACCAAGCTCTTCTTTTGTACAAACTGGGCAAGCGGCATCTCCTCAGAGGGCTCGAGGTGAACACGCGAGGCAAGCGCTGCGTCGGACGCCGCTGGGACTTCGCGCGACAGACGCAGCTGAGGATGAACGAGACTTTGAGGACCATAACCGATCGTCTCGAGGTGCTGGAGTCCACAGCGAGCTCGGGTCAGCGCCTTTATCCGACCCTTCCTGCCGTTACCACCAGAGTACCTGTCTCCGCTTCAGGGGGGGCCTCTGCTCATCCTGCCTCCCCTATGGAGGGCTTCGCTGCACCCGCTGAACTTCCACCAGCCTACACTCCACGACCGACAGAAGGGCATCTGTCACTCTCTCATGGAGGCAACGGGCCGTTTCAAACTGCTCCAGACCAGACAGCCCAACGCCAGGCCTTTGCCCCAGTCAATCTCAGAGAGACTGGCATGGAGATTTTGTTCTTGCCCAGTGGGGTGCAGATGTTCTTCGTTTCTGCTGAGGGTCATGTCAGCGCCCCTTCTTATCCAGGGTACCTGCGAATAATCATATACAACAGCCAGAACAGTAATGCCAGCTATGCCCCAGCATACCTACAGGTTTGTGATTGGATCTACCCGCTGTACCCAGACTCACCGGTCTTTCTTAGCAACAAAGGTGTGTTCACGTTTCCTGATTCCACCGCAGCAGTGCCGGGGTCCTATGTTGGGGTGGTGCTGTCCTCAGAGCTGCCTGCAGCAGACAGGCATCTGTTCCAGGAACAGCTGTCGGCGCTGGCACAGCTCAGGATCCAGGTAGATGAAGGTGGCGCTACAGGAACAGACATTAACCTGAGTGGAAAGGTTCCTCCTTCAGAAACATCTGTAACCCAAACACCAGGAGGGGAGGATAAAACTGTTCCTGTTTGGAGTGAAAAAATGTCTCAAAGTATTCTAGCAGGGACCTCCTGGTTGGGTCGGGGGCTAGTGCGAGGAGCTGAAGCTACTGGTAAAGCCATCCAGAGAGGAGCAACTAAGCTACGCGAAAACATCACTCCAGAGGAGACCCCAGCAGAGGTCAGCCCCAAGGTCACCAAAGGCCTTAATGCAGCCAAGCAGGCCACAGGGGGTGCTGTGAAAGTCAGCCAGTTTCTAGTGGACGGCGTCGCTGCTGTAGCTGATAGAGTTGGGAAAGAAATTGCTCCACACGTGAAAAAACATGGCAGCAAACTCATCCCAGAATCTCTCAAGAAAAGTAAAGACGGCTGCTCCAGCATGGATGGAGCCAAGCTTGTGGCAGGAAGCAGCAtacaagGTTTGTCAACTCTCTGGTCAAGTCTGGAAACGGCCGCAAAGACTATTGGCAAAAGTATTACTTCAGAGACTGTGACTACTGTGAAGCAcaaATTTAGGGGTCTAGGAAGCCTCTTGGACCCCCCCTAGCAACATATAAATGGTGGCGGGTAAAAATACACTGCGTTTTCTCTCACTAATGTCTCTGTGAAATTTAAACCTCCCCAAAGTGCCTTATTTTCTTGAGTTGCTGAGAAGGTGCTATTCTTATTACTGGTCTGTCAGAGTGCTTTGCGAATTAAAACTGAGGTATGGAGACGAGGCAGGACAAGCTGCAGACACTGCGGTCCAGTCTGCTGTCAATGTAGGTGTCACAGCATTTAATGTGGACAACCTGGGCATCAAGGGTGTGCTGAAGACCGCAGGCAAACACACTGCAAAAGCAATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114305 lncRNA downstream 32880 13500803 ~ 13505849 (-) False dclk1a
TU114322 lncRNA downstream 49896 13486267 ~ 13488833 (-) True G77284
TU114273 lncRNA downstream 209836 13328642 ~ 13328893 (-) True G77245
TU114244 lncRNA downstream 223155 13313194 ~ 13315574 (-) True G77220
TU114230 lncRNA downstream 327783 13210616 ~ 13210946 (-) True G77208
XR_006251929.1 lncRNA upstream 4639 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA upstream 4639 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA upstream 11941 13555556 ~ 13556192 (-) True G77294
TU114360 lncRNA upstream 126357 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 247706 13791321 ~ 13791934 (-) True G77349
XM_043250608.1 mRNA downstream 761 13533751 ~ 13537968 (-) False ccdc169
XM_043250607.1 mRNA downstream 761 13533751 ~ 13537968 (-) True ccdc169
XM_043250605.1 mRNA downstream 5665 13499201 ~ 13533064 (-) True dclk1a
XM_043250602.1 mRNA downstream 5687 13492273 ~ 13533042 (-) False dclk1a
XM_043250601.1 mRNA downstream 5690 13492273 ~ 13533039 (-) False dclk1a
XM_043249960.1 mRNA upstream 429 13544044 ~ 13546323 (-) True ccna1
XM_043249961.1 mRNA upstream 429 13544044 ~ 13546313 (-) False ccna1
XM_043250540.1 mRNA upstream 14863 13558478 ~ 13565616 (-) True smad9
XM_043250539.1 mRNA upstream 14863 13558478 ~ 13565613 (-) False smad9
XM_043250538.1 mRNA upstream 14863 13558478 ~ 13565613 (-) False smad9
TU113815 other downstream 749639 12782353 ~ 12789090 (-) True mogat2
XR_006251915.1 other downstream 2331477 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 2333502 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 2333503 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 2333503 11176569 ~ 11205226 (-) False LOC122352715
TU114352 other upstream 99676 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 262504 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 658647 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 658647 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 660801 14204416 ~ 14208006 (-) True G77441

Expression Profile