RNA id: XM_043250607.1


Basic Information

Item Value
RNA id XM_043250607.1
length 1468
RNA type mRNA
GC content 0.38
exon number 8
gene id ccdc169
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13533751 ~ 13537968 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAggaattacagtatattttcccaaatctgaaaaatgtaaaaggtgTGCATCATAGCTGACACCTAGATGAACACTTTACGGTGTGTTTTATGATTACTAAATCAAAGTAGACTGAAGGGTATTGAAAAGATCGCCGCACAATGGGACTCAACGTGTTGTTCGTTCCCGTGGATACAGCCCAACAATCACAAAGACACCGATGAAAGCCGAACCTGCTTATTATTCAGGATGGAAGAAACAGACCTCAGAAATTATGAGTTATCCCAACTGCAAGCAGAAGTCGAGCAGGAGAGAGAGGTCAAGGAGATGTTAAAGGACTCCGTGTCTGATCTGAGGAGCACACTGGCCGATTTGGAGAACAGACTTCGTAATGTCGATGGAGAAGAGAACGAGTGGAGAACCAGATATGAGACACAGCTGGAGCTGAACGAGCAGCTGGAGAAACAAATCCGAGTCGCTCGAGAGAGACTCGAGACCCTCCGCGGTGACCCCTCAGATCGACTGGCTTCTATTCGCTCATATGATGAAATGTCAGAGgATGCTCTCAGACGGAGATTGAAATTGCTGTCTACTGAGAAGTGCAGCCTTCAATCCCAACTGAAGGATTTCCAAATGAGAATTGTGCAGGAGGGAAAGACTTACCAGAAAGTCTACGAAGAGAGGCGGGCGTATCTTGCTGAGATCGCAAAGCTGTCTTCAACTGTGGATGTGAGCAGAAAGCAGCATACGGTTCAAGCCTGGAGGACAGCGCTGGGTCCAGACAAAATCAGAGGCCAGGAGAGTAAGAGGCAACATTCAAACATGATGCAGGGGGCTGTCAAAAAAGCACCAGCAAGGAGTCGTCTACCTcgattaaaacattaattccATTCAGGGTGTCCATCAGCTATTGTTtgataatttttgtttaatttttcttttattcttttttttaagaacagtAAAATGAAGCATAATCTTTGAGTTCATAGACCTAGCTTGATAGAGGCCACTTTGAAcagcctaataataataataataaaaaaatacagttaggttatttttaggttaattacagtttggtttattttattgggTTTCATCTTATCATTTCAGGGTGAAACAATGTTAAGTCAGTGTTTATGTGTCAGTGCTAAGTGCAttgaattaatattacataGTGATATTGGTTTTATAgcattattaatgttgaaacaaTGGGAAAATGGTAATGTCACTGAATCAACATTATGAAGTAATGATTGTAATCATCACATGTTCACCTTCagttaatgtttcattttcataaaaactacaacaacaacaacaacaataacaaacaataaCATGTAACTGAATCAGTGTTACACTGTGATATTCTACTGTTATGCACAATATTAACTGTTGTTgagtcaatataaaaaataggaTGTGATTTAAACTGTATGTTCATTataaaccactttaaaaaaaataaaataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114305 lncRNA downstream 27902 13500803 ~ 13505849 (-) False dclk1a
TU114322 lncRNA downstream 44918 13486267 ~ 13488833 (-) True G77284
TU114273 lncRNA downstream 204858 13328642 ~ 13328893 (-) True G77245
TU114244 lncRNA downstream 218177 13313194 ~ 13315574 (-) True G77220
TU114230 lncRNA downstream 322805 13210616 ~ 13210946 (-) True G77208
XR_006251929.1 lncRNA upstream 10286 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA upstream 10286 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA upstream 17588 13555556 ~ 13556192 (-) True G77294
TU114360 lncRNA upstream 132004 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 253353 13791321 ~ 13791934 (-) True G77349
XM_043250605.1 mRNA downstream 687 13499201 ~ 13533064 (-) True dclk1a
XM_043250601.1 mRNA downstream 712 13492273 ~ 13533039 (-) False dclk1a
XM_043250606.1 mRNA upstream 188 13538156 ~ 13543615 (-) True sparta
XM_043249960.1 mRNA upstream 6076 13544044 ~ 13546323 (-) True ccna1
XM_043249961.1 mRNA upstream 6076 13544044 ~ 13546313 (-) False ccna1
XM_043250540.1 mRNA upstream 20510 13558478 ~ 13565616 (-) True smad9
XM_043250539.1 mRNA upstream 20510 13558478 ~ 13565613 (-) False smad9
TU113815 other downstream 744661 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 2328525 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 761 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 105323 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 268151 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 664294 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 664294 14202262 ~ 14202837 (-) False G77440

Expression Profile