RNA id: XM_043250651.1


Basic Information

Item Value
RNA id XM_043250651.1
length 1326
RNA type mRNA
GC content 0.45
exon number 11
gene id sftpba
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8475593 ~ 8481988 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTCTACAGCTTTGTCATTTGCAAAGTGAGAGCTCTATGTTATCGTGCCTCACCGGTGCTTTTGAGGTGTCATATATAAAGGGTAGTTCCTGTTTAAGCTGAACTTTCCAGTTGCTTCATGCAGggccaaaataaaacattttgcattggTTCTGCAACCTTTGGTGATTGAAGACATGACTGCCTTTAGACtggagtttttctttttcactgcTCTTCTGGGCTCAgtcaACACACGCTCTGTTGATACAACTGGCGTGATGAATGTCCTGATGGGTGTGGATGTCACTGCGACAGGTGACATGTGCCAGGACTGCAGTAAGATTTTTGAGCTTCTAAAGGACCTCCTTTCCAATGAAGACTTCCAGACCAAATTAACTGCCGCTCTTGACCAAATGTGTGATAAGTTGCCTCTCCAAATCACTCAAATCTGCCACACCGAGGTGGAAAAGATGCTTCCACTGGCTATCACCTTCATTACCAGCATAATGCAACCTGGTGACATCTGTACAATTCTAGGAATGTGTGGAGGACGTGACAGTGCCAAGATTAGAGCTCTGTTGCTtaatcacatttcaaaaacgGCACCAGTGCCAACTATGAAGATGGAGACATCCATTCAGTGCTCTGTTTGCACATATGTCGTGAGCTCACTTGGGTATCTGTTTCCCAGAGAGAGGGCTCAGAACATCGTAACTGTGCTGCTGGAGAGTTTGTGCAGAGAATTTCCCCTTCCGGTTCAACCACAGTGCAATAAAATGGTTGAAAAATACGTTCAACTGTTGGTTGAAATGCTACTGAACAATACTTCTCCTAACTTCATATGCACTCTgcttcatttttgtgaaatatggGAGCATCCCATCAATGCTTCTGTGCCTTTTTCTGATTGTGAATCTTGTCTCACATTGGGAGTTCTGGCTCATGTTTATCTGGGCCCCAATGTCACTGAGCTCCAGGCTGCTTCATTCTTGGACACCGTCTGCCAGCTGCACCCCAGTGCCATGCCAAAGTGTGAGACCTATGTGCAGCGTCATGGGAACCAGCTCCGTGTGTTTCTGAGCCAACAGCAGGAGTTACTGGACATTTGTAAGAGGGcacatttgtgtgtttctggTGAGAAGGAGATTGCTGCTGACCCCTGTAGCCTTGGACCAATCTACAGCTGTAGAGACCTCCAGACTGCTGTCAACTGTGGGGCAATTTCCTTCTGTCAGAAGAACGTGTGGGAATAATCTTTTTCTGCTGTCCAAACTACATGGTAAATGTCAACTCATTGTTTGCTAAATGTCAACCAATTGCTAATAAAATTGCTAACAAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112210 lncRNA upstream 8316 8464744 ~ 8467277 (+) True G75813
TU112211 lncRNA upstream 13186 8397832 ~ 8462407 (+) True G75814
TU112188 lncRNA upstream 161471 8313561 ~ 8314122 (+) True G75799
TU112158 lncRNA upstream 189728 8285155 ~ 8285865 (+) True G75774
TU112150 lncRNA upstream 309889 8165448 ~ 8165704 (+) True G75766
XR_006251938.1 lncRNA downstream 221526 8703514 ~ 8704860 (+) True LOC122352915
TU112404 lncRNA downstream 226766 8708754 ~ 8712198 (+) True G75934
TU112452 lncRNA downstream 764010 9245998 ~ 9253481 (+) True G75974
TU112466 lncRNA downstream 784827 9266815 ~ 9273289 (+) True G75984
TU112468 lncRNA downstream 795445 9277433 ~ 9283648 (+) True LOC122353086
XM_043250626.1 mRNA upstream 48663 8420336 ~ 8426930 (+) True ggcx
XM_043250659.1 mRNA upstream 63990 8409867 ~ 8411603 (+) True fam136a
XM_043250650.1 mRNA upstream 73997 8398186 ~ 8401596 (+) True stoml2
XM_043250653.1 mRNA upstream 180758 8292462 ~ 8294835 (+) True fam166b
XM_043250655.1 mRNA upstream 191283 8272091 ~ 8284310 (+) True rnf208
XM_043250660.1 mRNA downstream 98021 8580009 ~ 8581128 (+) True LOC122352912
XM_043249831.1 mRNA downstream 588852 9070840 ~ 9085659 (+) True LOC122352417
XM_043249832.1 mRNA downstream 594878 9076866 ~ 9207335 (+) True gbe1a
XM_043250916.1 mRNA downstream 808863 9290851 ~ 9302634 (+) True paxbp1
XM_043250342.1 mRNA downstream 821648 9303636 ~ 9323880 (+) True slc7a1a
TU112127 other upstream 372669 8101476 ~ 8102924 (+) True G75750
XR_006251892.1 other upstream 596352 7872539 ~ 7879241 (+) False arrb2a
XR_006252002.1 other upstream 611681 7863779 ~ 7863912 (+) True LOC122353466
unassigned_transcript_1471 other upstream 613560 7861960 ~ 7862033 (+) True trnat-agu_2
unassigned_transcript_1470 other upstream 613919 7861593 ~ 7861674 (+) True trnas-gcu_13
TU112216 other downstream 98311 8580299 ~ 8581102 (+) False LOC122352912
TU112405 other downstream 231215 8713203 ~ 8716277 (+) True G75935
TU112407 other downstream 251791 8733779 ~ 8734996 (+) True G75937
TU112450 other downstream 667803 9149791 ~ 9152619 (+) False gbe1a
TU112684 other downstream 1210218 9692206 ~ 9699748 (+) False map3k7cl

Expression Profile