RNA id: XM_043250659.1


Basic Information

Item Value
RNA id XM_043250659.1
length 812
RNA type mRNA
GC content 0.46
exon number 3
gene id fam136a
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8409867 ~ 8411603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGTGACCTTACTGAAGAATTATTGAATTTCAGGATACTTCAGGTTGATACATTTGAACGTTTCAGTAATTATTTGCAGGTTTTGTTAGTCAAATCTGTTGGGTTTGAGTCGTGGCTTTATAGAGTCCGCTGGTTGAAGCAGTAACTAGTTATCTTTATTACTAACGTTTACTGGAAATAAAAGCAGTTGATGTGAGATCAGGAATGGCAGAAGGACAGCAGGCTCGCGTGCAGAAGGCAGTGGAGGATATGGTTCAGAGTCTGGAGAAAGATCACATCCGTAAGATGCAGGGGCGTATGTTCCGCTGCAGTGCAGAGTGTTGTGAGAATCCTGGCCACTCCATGAACCAGGTGCACCAGTGTATAGATCGCTGCCACGCACCGCTGGCTAAAGCTCAAGGACTGGTCACCAGTGAACTCGAGCAGTTTCAGGATCGTCTCTCGAGGTGTACAATGCACTGTAATGACAAAGCCAAAGATCTGTTTGACTCCGGGGGGAAGGAGGTAGCCGTGCGGGCGCTGATGGACAGCTGTGTAAGCAGCTGTGTGGATGAGCACCTGAACCTGCTGCCCAGCATGACTCGCAGACTGAAGGACAGCCTGAACTCAATACCTCAGTGAAGCCTGTAGGCTGTATGAAATAATTCTTGTGGACTCATAAGTTTACTGGATAGAAGAATGTGGTCTTTGCTATCGCCTAACTGTGACTTGGTGAATGGTTTGTGCTGATTTCTGTGTccatattgtttgttttttgtacagACAATAAATAATGTGATCAAACCAGCTTGCTGGCTGTTAAATGATAAA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112188 lncRNA upstream 95745 8313561 ~ 8314122 (+) True G75799
TU112158 lncRNA upstream 124002 8285155 ~ 8285865 (+) True G75774
TU112150 lncRNA upstream 244163 8165448 ~ 8165704 (+) True G75766
TU111975 lncRNA upstream 339956 8036134 ~ 8069911 (+) True G75629
TU111946 lncRNA upstream 507136 7901223 ~ 7902731 (+) True G75607
TU112210 lncRNA downstream 53141 8464744 ~ 8467277 (+) True G75813
XR_006251938.1 lncRNA downstream 291911 8703514 ~ 8704860 (+) True LOC122352915
TU112404 lncRNA downstream 297151 8708754 ~ 8712198 (+) True G75934
TU112452 lncRNA downstream 834395 9245998 ~ 9253481 (+) True G75974
TU112466 lncRNA downstream 855212 9266815 ~ 9273289 (+) True G75984
XM_043250650.1 mRNA upstream 8271 8398186 ~ 8401596 (+) True stoml2
XM_043250653.1 mRNA upstream 115032 8292462 ~ 8294835 (+) True fam166b
XM_043250655.1 mRNA upstream 125557 8272091 ~ 8284310 (+) True rnf208
XM_043250629.1 mRNA upstream 139626 8259988 ~ 8270241 (+) True LOC122352886
XM_043250630.1 mRNA upstream 168411 8228308 ~ 8241456 (+) True LOC122352887
XM_043250626.1 mRNA downstream 8733 8420336 ~ 8426930 (+) True ggcx
XM_043250651.1 mRNA downstream 63990 8475593 ~ 8481988 (+) True sftpba
XM_043250660.1 mRNA downstream 168406 8580009 ~ 8581128 (+) True LOC122352912
XM_043249831.1 mRNA downstream 659237 9070840 ~ 9085659 (+) True LOC122352417
XM_043249832.1 mRNA downstream 665263 9076866 ~ 9207335 (+) True gbe1a
TU112127 other upstream 306943 8101476 ~ 8102924 (+) True G75750
XR_006251892.1 other upstream 530626 7872539 ~ 7879241 (+) False arrb2a
XR_006252002.1 other upstream 545955 7863779 ~ 7863912 (+) True LOC122353466
unassigned_transcript_1471 other upstream 547834 7861960 ~ 7862033 (+) True trnat-agu_2
unassigned_transcript_1470 other upstream 548193 7861593 ~ 7861674 (+) True trnas-gcu_13
TU112216 other downstream 168696 8580299 ~ 8581102 (+) False LOC122352912
TU112405 other downstream 301600 8713203 ~ 8716277 (+) True G75935
TU112407 other downstream 322176 8733779 ~ 8734996 (+) True G75937
TU112450 other downstream 738188 9149791 ~ 9152619 (+) False gbe1a
TU112684 other downstream 1280603 9692206 ~ 9699748 (+) False map3k7cl

Expression Profile