RNA id: XM_043250695.1


Basic Information

Item Value
RNA id XM_043250695.1
length 3747
RNA type mRNA
GC content 0.43
exon number 14
gene id ppp3ccb
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6422217 ~ 6446922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCGGACATCGCTACTCCCTCAGAGAAATTGACAGCAGCTGGGTCGCCTGTGTGAGCAAACCCGAAGGACAGACACGGCAGAAAATAAAACTCTGCCGTTACAGTGGGCTCCCCCTTCCCCTTTCCCCCACCGTTTGAGCGTACATATCAACAAACCGACCCCGACGAGCGCTCTTTCTCCGTTTCCCCGCTCTTACAGCGGAGCGGTCAGGACTTTTTTTCCTCGCGAACTGAAACGTCAGTAGCTTAGCCGAGCTAGCGGGCTAACGCGACTAGCTGGGTTCAGCTACAAGCAGGAATTACAATTATTACACCGAGAGACACTGAAGGATGTCGGGGAAGGAGCAGAATAAACAATCCACCACCGAACGGCTCGTCAAAGCAGTGCCGTACCCTCCCACGACGCGGCTCACCATGAAAGAGCTGTACGAGGACGGCAAGCCCAAGGTGGAGCTTTTGAAGAGCCACCTGGTGAAAGAGGGCCGCCTGGAGGAAGACGCAGCCCTACGCATCATCAACGATGGCGCTAACATCCTCCGCCATGAGAAATGCATGCTGGAAGTGGAGGCCCCCATCACAGTGTGTGGAGATGTCCATGGGCAGTTTTTTGACCTGATGAAGCTGTTTGAGGTTGGGGGTTCCCCTCACAATACACGCTATCTATTTTTGGGAGACTATGTGGATCGAGGCTATTTCAGTATTGAGTGTGTGCTCTATCTGTGGGCCCTGAAGATCAACCACCCGACCACCCTCTTCCTCCTCAGAGGCAACCACGAGTGCCGGCATCTCACGGAGTACTTCACCTTTAAACAAGAATGCAAGATTAAGTACTCGGAGCGCGTGTATGACGCCTGCATGGAGGCCTTTGACTGCCTTCCTCTGGCCGCTCTGCTCAACCAGCAGTTCCTGTGCGTTCACGGAGGCCTGTCCCCTGAGATCACCTGCCTTGACGACATCCGGAAATTAGACAGGTTTAAAGAGCCTCCAGCTTTCGGGCCGATGTGCGACCTGCTGTGGTCTGACCCTGGCGAGGACTACGGTAGCGAAAAGAGCTCGGAGCACTTTTGTCACAACAGCGTGAGAGGATGTTCCTATTTCTACAGTTACCCTGCAGTATGTGACTTTCTGATGAATAATAACTTGTTGTCAGTTATAAGAGCACATGAAGCCCAAGATGCGGGGTATCGAATGTACAGAAAAAGTCAGACGACAGGCTTCCCCTCTTTAATCACAATCTTCTCTGCACCGAACTACTTAGATGTGTATAACAATAAAGCTGCTGTGTTGAAATACGAGAACAACGTCATGAACATCCGGCAGTTCAATTGCTCTCCTCACCCGTACTGGCTGCCCAACTTCATGGATGTGTTCACATGGTCACTGCCCTTTGTCGGCGAGAAAGTAACAGAGATGCTGGTCAACGTGTTAAACATCTGCTCAGACGATGAGCTCATGTCAGAGGGAGACGACACATGTGAAGGTGGCGCCCCGGCAGTCCGCAAGGAGGTGATCCGAAATAAGATTCGTGCCATTGGCAAGATGGCCAGAGTCTTCTCTGTTCTTAGAGAGGAGAATGAGAGTGTGTTGCAGTTAAAGGGCTTGACCCCCACTGGGACATTGCCTCTGGGTGTGCTGTCAGGAGGCAGACAGACCCTACAGAGCGCCACCATAGAAGCAGAGGAAGCACGAGCCATCCAAGGCTTCAACCCTCAACACAAGATCCAAAGCTTCGAGGAAGCACGCGGCCTGGACCGGATAAACGAGCGAATGCCTCCGCGCAAGGACAGCATGCAGCCAGACGGCACTGCCAACTCCATCAACGCAGCCAATTCCCCCGACAAGAACGGCACCAACGCACAGGCGTAGTAACCCAGCAGCTACCTAGCGCTCTCCCTCATCCTTTCCTTTCTGTctctcatatttttttttttttttttttttttctcctctgtctctccctctgttttcctctcattctctctctttttggtAGAGGTGATGCCCCCTACATGCAAAACTCTCCAGGACCATTTCGGGGAGAATCGCACAATACCATGAAGAGGGcgtaatgaaaaacaaaccatggttcttatttatttattgatatagaTGATAAGAAATTTAAGATCTGTAATGGTGGGAAAATTGAGATGAATGAATACGTACAGGATGAAtattacatgtgtatataaaatacagaatatatatatagacatagcATTGGGGTGGTGTAAGGTCATCTTAGATTCAgtagctaaaaaataaataaatacaaaaaaaaatccattttgtAAATTTACGTTTATAAATTAGGTttatttctgacttttttttccttttctttttttttttttttttttttttttttttaacatccaAGACTTGCTCGGCATAATTTCTTTACATTGTTTGTGCGCTTAGCGAAATAATTCTTGGCCCATATAGAATGCTTATTTGTGAATAATACCCAAAGCGAGTATGATAATTGTTgacgcaaaacaaaaaaaaaaacagttttggtATTGAAGCATATGTGGAAAAATACCTTCATAATGCCAATTATAGCTACGACGAGTGCATTAATAACAAGTGTTGGCACgtttatatgtacatgtacattttGAAGTGTTCCTCAACCAAATGTGATGTttactttgtttcatttgatttttttatttttttttcttcctgtgcATAACTTAAACTACACCAATTTATAATCAAAAATGGCGGGGAAAAGCAAAAACCTTCCCAGAACTTGGTCGGAGGAGTGGTTGTgtctgcatgtttttatttactttcaacCCTCCATTTTGTAGTCACTCGCGCTTTTATAGGCCTCCGCCGTACTTTTGCGCACTTTTACACCTTTCAAGGTTTCGCTAATACCACAGTGGATAAAGGCACGATTGAACTGCCGTgattttatgcagatttttttttttttttttttttttgccgtccCGCTTTATACATGCCTTACAACCTGCATCTCATCTCGGcttaaataaattagttaaacgattttttttctattgccTTTTATTTTCCGTTTTTACAAATCAATTGTAGCCCAccaatttaaagttttaaaaacccatttaattttttcaatttatcTAACTAATGTACCTCTTGTGAGTATCTTCAGCGCTAGTATTTCTATAGCTGAGCTGCGCGCTCTTCTAAACGCCTGTATTCTGTAGAGTGGACCATTTTCCACGCATATGATTGACTGAAGCCTGAACCTGAAGCAAAGCAAAGTTATTTTCATTGCTTTTActgtactgtgtgttttttgagAATTAAGAACGCGATTTGCAAGAACTGTTTACCAAATCgtcttttcaaactttttttttttttttttttttttcgatacTGTACCATTATCGTTGCATAGTAATCCAGTGACTGGAGATTTCGCTCTCATTAAAGATTCAAACTTCCTGTGCGTTAGACATTTTGAGGTCATGTGCCATGctaataaatatagcaaaatttCTGTGTGCAGGCATCGAGACTGTCGCTCACACGTGTATTTTCCGTTTTATTTAACACCGCAAGCAGTTCAGGGTCTATACGTCTTGCGCAATCTTAAAACGAGACTCGGCGAGGATAAACCTGCATGTTatcattactgtatttaaaagtaACTCTCATCCAAAGAaaaatcagtgttttaatgtaatatattgtatggCTTTAtcattgacaaaaaaacaaaacacaaaaaaaaacaact

Function

GO:

id name namespace
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111315 lncRNA upstream 217296 6179206 ~ 6204921 (+) True G75192
XR_006251905.1 lncRNA upstream 231777 6186147 ~ 6190440 (+) True LOC122352660
TU111146 lncRNA upstream 446659 5942274 ~ 5975558 (+) False G75102
TU111145 lncRNA upstream 476521 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 514690 5907179 ~ 5907527 (+) True G75097
TU111367 lncRNA downstream 95166 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 131250 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 197114 6644036 ~ 6650405 (+) True G75361
TU111558 lncRNA downstream 197114 6644036 ~ 6655910 (+) False G75361
TU111573 lncRNA downstream 288010 6734932 ~ 6759645 (+) True G75371
XM_043251208.1 mRNA upstream 16986 6385518 ~ 6405231 (+) True dmtn
XM_043251205.1 mRNA upstream 26579 6363614 ~ 6395638 (+) False xpo7
XM_043251207.1 mRNA upstream 26579 6366254 ~ 6395638 (+) False xpo7
XM_043251206.1 mRNA upstream 39768 6363614 ~ 6382449 (+) True xpo7
XM_043249825.1 mRNA upstream 145093 6275720 ~ 6277124 (+) True LOC122352409
XM_043249895.1 mRNA downstream 7143 6454065 ~ 6455045 (+) True LOC122352486
XM_043250140.1 mRNA downstream 55396 6502318 ~ 6506085 (+) True golga7
XM_043249826.1 mRNA downstream 60128 6507050 ~ 6515927 (+) True r3hcc1
XM_043250508.1 mRNA downstream 155455 6602377 ~ 6610875 (+) True letm2
XM_043251081.1 mRNA downstream 167108 6614030 ~ 6624214 (+) True si:dkey-81j8.6
XR_006251967.1 other upstream 332630 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 860132 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 921913 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1163394 5256838 ~ 5258823 (+) True G74965
TU110925 other upstream 1172080 5244590 ~ 5250137 (+) True LOC122352567
TU111380 other downstream 7414 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 695371 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 706664 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 706664 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 761613 7208535 ~ 7221528 (+) False LOC122353118

Expression Profile