RNA id: XM_043250725.1


Basic Information

Item Value
RNA id XM_043250725.1
length 647
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC122352948
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10383532 ~ 10384648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cATCGTGTCAacagtgtgtggtgtgtgttgtACACTGACCTAGGTTTCCTCGATCATACCCCGCGTGCGGTGACGGCGTTGGGCACCGGGCTCGTGCACACCATGAGCGGGATGAGGACCGTCCTGACCTCGGTCGGGGTGCTCGGGTTTGTCGGTGTGGGCTTTGGCATGTGGGCTATAATTTCACCTGGGGAGGACAGGAACAGGGAATTATTAAAGAATCTGCCAGAGGCCAACCCTGCCCGAATGGAggagaacagaaagagaaatgCCCTCATGCTTCAGGTTTTAAAGGACGCTGCGGAGACGAATGACAACATCGCACGTGGAAATAGTGGCCAGAAATGAAGGTGTTGGCACAGTCGTCGGACTTTGCCCGGAAgtgacttctttaaaaaataactgatCTGCAAATGCTCCATGTGCTGACCATCACTGCCACTGCCACGAATTGCACGTTAAAGAGTTGCTTTGGATTTGTTCTCCTTGCTGGGAAATGATAATTGTAACTTAGCTGTGTTTTGGAacatgttccaaaaaaaaaaaaaggcatggcCTGCTAGTTGCTGGTCCAAAATGGACCacattgtttatacatttatgtaaatatttatggaGATTGTATctcaaataaaactttaaacgtg

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113081 lncRNA downstream 66132 10317071 ~ 10317400 (-) True G76426
TU113074 lncRNA downstream 129671 10253025 ~ 10253861 (-) True G76421
TU113066 lncRNA downstream 141350 10241959 ~ 10242182 (-) True G76413
TU113040 lncRNA downstream 199010 10184094 ~ 10184522 (-) True G76388
TU112932 lncRNA downstream 277353 10098265 ~ 10106179 (-) True G76327
TU113138 lncRNA upstream 19309 10403957 ~ 10411838 (-) True G76458
TU113174 lncRNA upstream 39967 10424615 ~ 10445156 (-) True G76488
TU113180 lncRNA upstream 51544 10436192 ~ 10460399 (-) True G76489
TU113191 lncRNA upstream 70943 10455591 ~ 10456512 (-) True G76493
TU113376 lncRNA upstream 487158 10871806 ~ 10872087 (-) True G76618
XM_043250724.1 mRNA downstream 200 10382676 ~ 10383332 (-) True LOC122352947
XM_043250197.1 mRNA downstream 2458 10380416 ~ 10381074 (-) True LOC122352676
XM_043250195.1 mRNA downstream 4514 10377864 ~ 10379018 (-) True mrpl49
XM_043250191.1 mRNA downstream 5804 10375502 ~ 10377728 (-) True znhit2
XM_043250132.1 mRNA downstream 80508 10289532 ~ 10303024 (-) False LOC122352632
XM_043250872.1 mRNA upstream 5468 10390116 ~ 10398224 (-) False cnih2
XM_043250873.1 mRNA upstream 5468 10390116 ~ 10398058 (-) False cnih2
XM_043250874.1 mRNA upstream 5468 10390116 ~ 10397645 (-) True cnih2
XM_043250831.1 mRNA upstream 97005 10481653 ~ 10762897 (-) False auts2a
XM_043250826.1 mRNA upstream 97005 10481653 ~ 10762896 (-) False auts2a
TU113101 other downstream 223 10380096 ~ 10383309 (-) True G76438
TU113103 other downstream 223 10380096 ~ 10383309 (-) False G76438
TU113102 other downstream 2485 10380096 ~ 10381047 (-) False G76438
TU113078 other downstream 105831 10267354 ~ 10277701 (-) True fgf13b
XR_006251964.1 other downstream 758127 9589980 ~ 9625405 (-) False LOC122353179
TU113196 other upstream 93411 10478059 ~ 10480189 (-) True G76498
XR_006251870.1 other upstream 591680 10976328 ~ 10983737 (-) False rps6kb1a
XR_006251871.1 other upstream 593288 10977936 ~ 10983738 (-) False rps6kb1a
TU113393 other upstream 632462 11017110 ~ 11038731 (-) True G76625
XR_006251915.1 other upstream 791921 11176569 ~ 11207252 (-) False LOC122352715

Expression Profile