RNA id: XM_043250728.1


Basic Information

Item Value
RNA id XM_043250728.1
length 6538
RNA type mRNA
GC content 0.46
exon number 22
gene id igsf9a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5958839 ~ 5984926 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCTGACCGTCAGTGGCAGTCCAGTAAGTGTTTTAATTGCCCCTGCTAGGGGTCCAAGTGGATCTGCGGGGGGCAGCTCGAGCAAAATGTCCAGCATCCACCCAGCAGAGGCTTTCAGGATGCCGCAAATCAATTTCTGACGTCTTCATCTAAAATCAGGTATGTGAATCTGTATGAATACCCATCATGCTACTGAAGAACCTTCCTCTGTTGGAAGTCATTGTTGCAGTGCTGTCCCTATTCAGTCACACAAGAGCAGGTGAAACCCAGGTGCGTGCCAAAAAAGGGGACACTGCAGTGTTGACATGCAGTCTTCCAGCCCTGGACGAGGGCAGCTCTGCTCCCCAACACGTCATAGAGTGGGTGCGTCAGGGCTATGATATCCCCATCCTCATCCAGTTTGGAGTCCACGATCCCAGAGTGCATCCCAGCTATGACGGCCGAGTGTCACTCATCAGGGGAACATCCCTGCAGATGAGGGGGCTTCTCCTGGAAGACGAAGGCTTGTATGAATGCCGAATCCTCCCGCTAGACAAAACCACAGATGAGACGGGCAGCAACGGGAGCTGGACTCTACTCTCTGTTACAGCGCCTCCCGTGTTTAAGGAGACCTCCCCTCCTGAAGTTGAAGTGTTTGCAGGGAGATCGGTGACCCTGAAGTGTGCAGCTCAGGGAAACCCACGGCCCACAATAACCTGGTCCAAAGATGGACGGCCTATAAATCCTCAAAGCAAAGTAAAGATCATGAATGGAAGCGTATCTTTTCATGCTGTAAGCAGAGAAACGTCAGGCCTGTATCAGTGTCACGCTTCCAACGCTGAAGGAAATGTGACTCACCTCACAAAGCTCAAAGTCATTGGCCCTCCAGTGATCGTAATTCCTCCAACGGACACTGTTCTCAACATGACCCAGGATGCCAAGTTGAAGTGCCAGGCTGAAGCTGACCCACCCAACATGACCTACGTGTGGCAAAGACAAGGAGAAGATATTTATCACATCGAGTCTCTGAAGTCTCGTGTTAAGGTCATAGTGGACGGGACACTTCTCATATCGCGTTTGACTCCAAGGGATTCTGGGAACTACACCTGTATGCCCACTAATGGACTTCCTGTCTCTCCCTCTGCCTCGGCTACCCTCACGGTGCAGCaccCAGCACAGGTGATGAAGATGCCCTCATTGACCTTCCTCCCCACTGGCCTGAGGGGCGTCATTGCGTGCCCCGACAGAGCTGAACCACCATTATCACATGTTGACTGGATCAAAGATGACAAACCACTCGATTTAGGCACGTATCCTGGATGGACACTGACTTCAGAAGGCTCTATAATCATAGCAACAGCTAATGATGACGCTGCAGGTGTATACACATGTACTCCCTACAATAGCTTTGGGACAATGGGCCAGTCTGAGCCCACCTCCGTTGTACTACAGGATCCTCCATCATTTAAAGTGTCACCTCATAAGGAGTACAGACAGGATGCTGGAGGCATGCTTGTTATTCCATGTCAGATGGACGGTAATCCGGCTCCAAAAGTCAGCTGGAAAAAGGTTGGCACAGCCTCTCGCTCACTGTTCACTGTAGCCGCGAATGGCTCCCTCATTCTGCGTCCTCTCAGTAAAGACCACCAGGGGGAATGGGAGTGCAGCTCCACCAACCGAGTGGCCACTGTAtccatcaaaacaaaagttctTGTGCTTGGTACAAGTCCACATGCAGTGTCATCAGTATCTGTGATCCCAGGAATTAACCAGGCCAATATCTCCTGGGTAGCTGGCTTTGATGGAGGATATGCCCAGAAATTCACTGTCTGGTATAAGCAGGTGTCAGCAGAAAGGAAAGAGGAAAAGCAAGAGTGGTTGTCTTTCTCAGACCTCTCCACTGTAAACAGTCTGTTGGTCACCGATCTTCTTCCTGCCACTGAGTACCAATTCAGTGTTATGGCCCAAAATAAAATTGGCACTGGGCCCTTCAGTGAAATCACCACCATCACAACTCTGGaTGCACTTCCTGCTGTGGCCAAGCTGGTACCACCTACGAATCTCTCGATCAATAAGAGTTCAGAGGGAATCCTTCTGTGGTGGTCAGTGCCTCAGTCCCAGTCTCTACCTATTGACAGTTTTGTCGTACAGTCACGCCTTGAAGGAGGGGAATGGATTAATCTGAAAGAGAACATTAGCCCAGTTGAGAGTCAAatctttcttccagggttatgtAAGgactgcAAGTATGAACTGAGGCTTCTCTCTCAACGTGGAGATCAGCTAAGCATGCCTAGTCCATCAATCAGTGTCTCTACCATAGGAATGAATATGCACCCAGCCAGTTCCCGCCTCCTAGACTTTCCTGACCAGCTAATGGCTGGTGTAATGGGTGGAGTAGGACTCCTTTGTCTTGCTCTTATCCTGACCCTGGCAATAGtctgtttcatttttcagaaaagGAACCGAAGGCGTAGACAGAATGCCAAGGATCTCCCTCCTGCAATAAATAAGAACCCTTCTGAAAACAGCCCTGACAACACCCTAAACCAAAGGCTTCTACCTGCTCGTCCACTCTCCTACACCTCCTCTTCTTCCAATCACTCCTCCCTTGAAAAGTCTAGTCACAGTGATTTACATGCCCAGAGGCAACATCTCCTGCCTCAAGCTCACCCTCCATCCCACCATTCCCTCCCTGAGAGCCATCTCCAACGTGCATCACTTGCTCCTGTGTCCTCTGTGGACTTCATCCACCGAGGCCCTGACGGACGCTTTATTGTTGATTCTTGTGAAGACTCCAATATTACCAGTTCTCATATCAAGAGAATCCCAAGTCAAAACTCCCATCAGTCATCAGATGGAAGTAGGAGCTACAGAATCCAGAAATCCCAGTCTTTGAGATCCTacagagatgaaagaaaaaagccaCCTTTTGTCCTTTCGGTGGATCTTCCACCTTTCGCATCAGATATCCCTTCTTCTAGCAGAACACGAGCTATGGCTAAGCACCTCTCATTAAACGGCCATTACATGCCCATTCTGGAGCAAGAGTTCTTGGATGGACCAGACCAGACAAGTCTCTCATCAGAGTGTAGTGGGTCTTTTCTCTATCCTCATTCAGAAAGTACTCTGGGTCAGCAGTCCGTGAAACAAGGTACCCAACATTCTACAGCCAGTACCCTGGTTTTGCAGATGGAGCACGAGAGGGAACAAGGAAACCTAAGCCGCTGTTTATCTTTAGCTCGTGAGAGAGAGGAGCTTGAAAGGGAACTGCGCAAGTACACAGTTGATCGAAATCCATATAGTAATGAACAGACAGATGATGAGTATGGAAAAATCTGGAATATTCGAGAAACTTCAACTCCTCAGGGTAACTACCAAGCCATTAGACAAAGCCTATTAACTGAGAAAAACACCATGTTGAAGGGAAGAGCGGCTTCTTGCATTCCATGGGAGGAAAGACACAGAATTTCTTCTGCAAGCTTGGTGCCCCTACATACCTCTCATGGTAAGGATACCAAGTACAGGCAGAATCAACAAGGTTACTATTCCATCCACAGATCAAACTACCAAAGGTCTCGTAGTCTAGACAGAGGGGAACGCCAAAAATCGCAAACATGGGATCGAAGACGAAGCAGAACTCCTGTTGAGTCAAGTCTGGGTCGTGTTATGGACAAACCCTCAGTCTACCAATTGGAGAAGACCCAAACTGATGTAGGGCATAGAGGACAGAGGCCCTCAAGCAGAAGTCAACATTATTATGatctatgtatttattcatcctCAGACGATCAGCAGAGGCAGACCATAGAACGAAGCACTAGACAGATAAATCCAACTAATGTTTATTCTGAAATGAGTGTAGATGGACCTGATCTTGACAGCCAATCGCCATATTCAAGGTCCATTCTATGCTCGGATCACAGCTACGAGACTCTAAATTATGACCGACCCAGATTATCAGATCTTGTAAATGAGCGATCAGGAGATACATGTTTAAGAAAACAGGAGAAGTTAAACGATTGGTCAAGCAAAACTGTATCTCAAATCAGTGTCTCTGGAACAATGCCTCGGAAGACAAAGAGTCTGGGCTCAAACAATTGGAATCGACATAAAAGCACACAAAGTTTAGACTCAAAATTATACAAGGATCAGTTTTTGACCCCTGATGCCTGGATAGACTCGTTGACACTTGGTCGAGATTCTACATTGTCCCCTCTTCCATGCAGACCTAAATCTGTGGCAGATAATCCTAAAAGTAGTCCCAGTTTGCAAATAGATTCATCTGTGCCTTTAGAAAGTCAAACACAAGACCCCTATCATCAGGCCTCTAAATCATATGATGGCTCCATGAGTAACTCAAAATCCAGCAAAGTCTCGGGACATAGCACTCATGCTGCCTTATCAACAGGGGGTTCTAGCTGGCCTCGGCCTTATTGTCCCTCTCTGCCAGCCATGCCATCTGGAAGACAGAGCCAAAGccaagagagggagagagaggatgaATATGAAGATGGGCAAGAGGTGGATGTGGAAATTAACAGATATAGGAAAAGTTGCGAGACAGAGGGAAGCTACAGAAGCTATGCAAGCCAAAGCAGTGGCAGGGGCAGCATGGATGCCCCTAGCAGCAGGCAGTTCTCTCTCAGCCCCCCTCTGACCAGTTCTCCAGAGACCACAGAGGACAGTGACAGAGATGAGGCAGTTCTACATGAGCTTGAACGGCATGAAAGATCTAGAAGAGGCTCTGTGGATGAGAGTTATGAATGGGACTCCGCGTACGTTCCAATGCATCCCGTGGAACCCAAAATGTCAGCTCTACAGAGTCAAGAGAAGAAGATCAGCACTACTAAAGATTATGGCAGGGATTTAgacctgaaacaaaaagGTCTTTACCCTCCGACTGGTGTGAAGGGATCCGTTCCGCTCTTTGAACTTCCTCCTCACTGCAAGCAAGAATCGCTCCTTTCTCAGGAGATTCGGAAGAGCTTCACGTCATTCACTGACCCAGAACCCGACACTGTGCTTTTCTGATAAAGGACAATTGGACACAGCACGGTTCCCATCAACACACATCTGCATGGCCAACCCTATAGAGGACACCGGGTGTCACGATTAATTGGACGTCTGTGGACCACTCAAGCACAATGCAACCTAAGGACACACACTGCTCTGCCCAGCTAATGGAAATGACATTACCTGCTGGATGGGCCAAAGCGCAGTGAAGAGAACTGTCATTTAAAGAGCTTACATTATGTGCCAGAGATGCAAATCAAAGAGGGAATAATTAATACAGGACTTTGCTCTGTGCACCCTGCTGTTGCTGATGAAACCGAATTCGAAATAAATATGCTCAAGCTGTCCCAATGAGCCCCTCTTTGAAAGTTGATTTTCGCAGAGGCTTTCGATTGTTCTGCTATTCCTATTTTGACAGTAAGTGCACATTATAATTTGGAAACCTCATCAAAGCTCTTTTATGCTTGGTTACAGGAATATTTTATTGTGCGGAGCAGGATAATTTGTAGCTACCTTCAAGTTGTCAGGCGAATCGAGTTGCGTTAAAAAGTCCTCTGTAAATCTTGTCAAACATTTCACTGAAAATTGTGATTGAAGTACTGCTTTGGCAGCAACTTCAGTTTTCTTGACAATCATTGGTCCTCTCTACCCGCTCCTATCCGCTACCTCATACACGCTACAATCCCAATGACACCATTCATGTAAATTTTACAcacggaggaaaaaaaatgctgaccAGACTGACAATCGCTGAAACCTTTTGAAGGCTTAACCCTTTATCATCCAGTAGTTgtttcctgttttctttttttttttttttttggttaatggTGTGCGGGCTTTACGTTTTAGAATTTGTTTAACGTTCTGAgctcatttttgtgttttaatgagcCTCAGCGGTGAAGTTTGAGCCAtttaatgagaaaagaaaatgtgtaaaattgGTTGATTATTTGCatcagtgtcttttttttaggAAGAATCTAATAAACGGAAaggaaatgattaaattcaCTGCAGGTCATGGGAGTTAATTACGTATCACAGAACCCCGTGGTCCGGCCGTCTGCTGAACCTGACAATAAAGAGTTATGTTAACTACCAGAGCTTAACTGTTTACAATTAAACCAAACATTTTGCAAACCTTAtttcgtttttaaaaaaacagctaagaAGCTTTATatggattttattttggttCCAGAAGGCCAAAAACACTATAATTGCACTCTGATGGAAATCTTTATTTTCTGCCAGTACGAAATGCATCTTTGTATCTACTGCCTACCACAAATTCACTGAATGTAGAATCTTTGcaaatatgtgcatatgtaaTTACTTGTTATACATTAGCTTTTTAATCAGAGACTGTTCAAACCAGACTGtgctccctttttttttttttagtaggaAATTGTTTGCAACCCAgttattgtttttctgtaaacGGTTTGTACTCGCGTTTTTGTTACTTTATCACATTATGAATCTTATATCATGTATGTGGATTTATACATTGATTAAAGACAACAaaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111145 lncRNA upstream 13855 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 52024 5907179 ~ 5907527 (+) True G75097
TU111124 lncRNA upstream 237524 5663157 ~ 5722027 (+) True G75083
TU111119 lncRNA upstream 296476 5657359 ~ 5663075 (+) True G75081
TU111115 lncRNA upstream 315785 5643549 ~ 5643766 (+) True G75077
TU111315 lncRNA downstream 194280 6179206 ~ 6204921 (+) True G75192
XR_006251905.1 lncRNA downstream 201221 6186147 ~ 6190440 (+) True LOC122352660
TU111367 lncRNA downstream 557162 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 593246 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 659110 6644036 ~ 6650405 (+) True G75361
XM_043249897.1 mRNA upstream 2716 5955111 ~ 5956835 (+) True tmem230a
XM_043250958.1 mRNA upstream 17549 5921159 ~ 5942002 (+) True dpysl2b
XM_043250959.1 mRNA upstream 17549 5921159 ~ 5942002 (+) False dpysl2b
XM_043250960.1 mRNA upstream 17549 5924838 ~ 5942002 (+) False dpysl2b
XM_043250302.1 mRNA upstream 41501 5908013 ~ 5918050 (+) True bnip3lb
XM_043251164.1 mRNA downstream 76265 6061191 ~ 6089587 (+) False lrrtm4l1
XM_043251165.1 mRNA downstream 76265 6061191 ~ 6089587 (+) False lrrtm4l1
XM_043250530.1 mRNA downstream 147163 6132089 ~ 6139635 (+) True vsig8a
XM_043250188.1 mRNA downstream 155062 6139988 ~ 6147864 (+) True atp6v1b2
XM_043249822.1 mRNA downstream 163094 6148020 ~ 6154408 (+) True LOC122352405
TU111087 other upstream 397466 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 459247 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 700728 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 709414 5238428 ~ 5250137 (+) False LOC122352567
XR_006251967.1 other downstream 76265 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 469410 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1157367 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 1168660 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 1168660 7153586 ~ 7161263 (+) False LOC122352414

Expression Profile