RNA id: XM_043250738.1


Basic Information

Item Value
RNA id XM_043250738.1
length 4437
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC122352956
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13071391 ~ 13084252 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGGACTCCAGAATCTCAGAGCAAAGCTAATAATCCTAGAaatcagctgtgtgtgtgagacacacTCATCCGCTCTGTTTCTGCCTCTCTTCATCATACACACCCAGGATGATGAACAAACCCACTAGAGAAGATGAGACCTGCActtaatgtcacttttaaactctttttttgttttctgtgacaTAATGCTCGGCTAATGTGATGGTAACGTGGCTCATCAACGCCGGGGGATTTTCAAGAACTTTTTTCACCTCGGATGCTCCGGATCCAATGCTTGTACTAATTAGAGTTATCTTCAAATAGCTAATAGCTGTCTAGGATagatgtttaatatatatgatcaagtataaatatattttaaatcgctgatatttttaaacgtttaatctGTTCGTGTCTGACGAGACGATTTATCCGTTTAAAATCTGGCAGATTCATTAACGGGCGGTTTGCTGTGAACTGGCGTTTGTTAAGAGTGATACTTAGACTGTCAGTGGTTGGCtctgatgttttaataattgtattttgtgttaaaacatatctgtctgtttttgtcGTGCTGGTAGAAGTGATATTTACTTCAACCCACCTTTCGCGTGTTTCCACCCACTCTCCgtgaactttcatttttgctgCTTGTGAAGGAGTTTTATTAGTCAATACTAGGAAGGAAAGTGTCGTTGTTGTGCCGGGATGCGGAAGGGAGAGAAGTAGGGCTGCTGGTAAACATGTTAAGGGTTTAAAGCGAATGGCTCAGTGATCATGTCGCTTATGGAGGGTGTTTTGTCCTGGGTGGGTGACTGGCAGTGGCTTTGCATGGTCACTCTCTTTCTGGCCTCTGTTGTCACTTTGATTATATACTTGGTGCTGTATTTTTCCAACGAATCTCCTGTTGGGAAAACGCCTCTCAGTCATGTGGATTCTGAGGAAGCCGATGGGATTTTGTGCTGGGTGCTGTCTCTGAAAAGCTGGAAGAGTCAGTGGAGAAGAGCCTGGTTCAGGAGCCTCAATGAAGAAGCTTGTAGATCGCAGAGTGGGATTCAGCTGACATTTGAAGAAGATGGTGTTCAGTCTTCAGAGCTGGCCGTGGACCAGATTTCAAGCTTTACGAAAACACCCGGTCAGAAAAATGTCCTGTGTCAGGTGGTTGGAAACAAACTGCAGTTTTCTCTCAGTGCATTACCAAGCTCAGCGTGTTCAGAAACCCCCCTGAGATACAGTGTGAAGATATCTCCACTTTGTCTGCAGCTGGCCTTACAGATGAAAGAGGTGAATGAGGAGGTGGAGATTTCCTGGGGGGTGCTTCACCTGGACTCAAATTTGCAGCTCATGCCAAGTTTTACCCAGggagACTGTGACAGTCTGAGTGAAGCCGCTGTGAACGACAAGCTCAGACAGGTCTTAAGTCGAGCTCAAGCATCCGTAACTCTGAGCAGCCGGCCTGCAGAGTCTGCAGAAATCAAGGAAGTAAGGAACAAGACCTCGCAGGTGACCTCACCCCCGAAGCCCCCACGAGCTCATGAGTGGAAACTATTAGTGAAGAACATCCGGGTCACATGCAAACAGGAGGATGGTGCTGCAGGCGGCATGAATCCCCAGTGTATCCTTCAATTGGATGATCCTCCTCAGAAGGTCACCAGTTCAGTCTTGACTAACACATCCACCCCATCCTGGGACCAGCCCTTCATATTtgagcTTAGCGGCCGGTCAAAAGAGCTGAACATCCAGGTTGTGGATAACGGCAAACCTCTGGAGAATGATTTGTTAGGGCAGGTTTCTGTGCCTTTTGATCTAGTAAAGAAACACCCCAAAGGTCAACAGACCTTTTCACTCATGACCAAAGATCAAGTGACCGGATCACTAACTACTGAGTTCACCTACCTGGAGCCCAGTGAGGTACGTAGCTGGCAGATGCCTACACCGGCCCCTACTAAAAAAGTGGAGATGGACCGCACTGTGATGCCCTGTGGCACCGTTGTTACCACTGTCACTGCTGTGAGGAGCAAGCCAGGACGCCCTTTAGCACCTGAATCAAAATCGCCTTCTAAAAACAAGCTGGCGGAGAGAAGAGTGTCGGAGCAGACGTCATTACTCGGAGCCAAAGTTAGCAAAGCCCTGTCATCGTCAGATACAGAGTTATTGATGTTAAACGGGACCGACCCTGTAGCCGAAGCTGCCATCAGACAGCTCCATGAGTCGGCaaaacaaaagctgaaatccCCTGTCAAAAAGAGCACCATCATCATCTCAGGAGTGGCCAAGGCCCCTCTGACACAGGATGAGGAGATGGCTCTGATGGCAGGATACGCAGCTGCAATGGACGCTTCAATGTCCGGCGCATCTGAGGGCACCAGCAGTGAAGCGTTACCCTCAGAAACAGTGGCAGAACCCAGCGTTCTCGAACCCACAGAGTCTCTGGTGGCTGCGAATGGCACAGACCACGTGGAGGACTGGGAGAGCCAGGCTGGAGAGGACCCAGATGCGGATAAATCGTCTCTCTGTATCTCTGAAACAGGttccaaaaaaggaaaagGCAGCTTTCTGCACAAGAGTGCCAAGCTATTCTTCAGACGGCGACATCAGCGAAAGGAGCCGGGGATGAGCCAGTCCCACAATGACCTGCAGTACTTGGAGCATCCCGAGGCGGCCATGATGGGCGACAGGGAAAAGAGGACGGCCACCTTCAGGCGTATCATTAACCGAAAGCTTCTGCCCAGGAGCAAAAGCAAAACCAATGGCACAGTGAGAGAACCGCCCACATGAGCTGCCCACTCCGTCACCTTCATCCAAACTAATAGCTTTTACACCTCTTCTAACATCCTCCTTTTAACATTCATTCTCATAACTTTTATGCAAGTCATTGCTTGTTTCTGGGCCATATTTGCCAAAACCTCTGCGTAGCAACAATCACTCATCGACTCCATATTAACAACCTTCAGACCTCTCGGCTTGGTTCTGCTCCATAAAGAGCGTCTGCCTGATGCTAGATTCATCTCTCCATCCATGTGGAGGAATTTCACGGGCACTTTCCCTACTTGACCGTTCCGTCAACACCATTCAACTTTATCTTTGAGctttgtgtgcgtgtttatgCAAGAAAGTTTACAAAACAGCATTCAAATGGGCACTGGCTATCTTCGTGGCTCCAAATGACTGTCATTTAACCTTATGCAAATATTGATCGTCATGCAAATGATATTCTGCGTTTGTGGCCTTTTAACCAAAAGCGGGATTTGAGGACACCTCTTTCTTGCCATCTGCTTTAACCTTCTGGAATCCCTCTGGCGACCTGATGGATCCTGGAATATCAGACAAGGGAGTACCGTCGCTTTGATTTGCACTTGTTTATATGCTCAGAACTCATTCCAAATGCATTTGCAGGGATGTGCAGTGAATTCTGTGAGGTTCGGTGACGAAGATGCTCTGAAATAGcttattaaaaattatgtgAAAGACCTCTGTCTTGATGCGAGTTAAATATATGGgcgttttattttgataggGAGAAAAATCTGCAGTTTCCACAAATTTGGGAGTagtgagttttatttttcagcgaTTCCTTTTCAAACAGAGCATACACTTAAAATGTTCTGGTTTGGCACTGATATGTTCGATTTTgaagcaggtttttttttttttttttttttttttttttctaaacattcaAACAAAGATGGATATAATTAAaaggtaattttattttaaatattatcctttatgtacacatatttttagtgtgtatacacacatttgatttttgactttccagttattCCATCATGCCTCACATTACAAAAAGTGTTTGTATTGTACCAAAGGTTTTTAACACTAAGCAAGGATATTTTCCcatagagagagagtgagagaccAGAATGCATGAAAATTTAGCTAATCAATAGGttcatgatttgttttttgtttttttctttttttttacctatacTCTTAAGCCAGCTAAAATGGCTGTGAATAAGTTTGTATTTTGGACCTTATCTGTTGAGCCTGTGTGGAGAACTGCAGTGGATTTGTATTATAGGAGATTCAATAACGGGCTCCGGCTCCGCTTGACATTTACTTGACCTCAAACTTACATATGTAGAAGAAACCTGAATGCCTGTCCATACTGAATGTTGCCAGAAAGAAACCTCAGCAGTCTGGctgttaaatatgtattttgggAGGACTActgttctgtgttttgttttgtttatttttgtctatgTTGTGTGTTTCAATGTGCATCCTGGCCGTCACAAAATGAAAGGGGTATTTTCCAGTGAAATGGAAAGCGGCAcattaagatttaatttttgtcCTGCTTGATTGGCCGGCCAGAGGTGATCCcatcattaaatgaaatctaACACATCAGTCCTCTGTATATGCATATCATAATATATCCATGTGCATTAAAGAACTCCTCTCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114171 lncRNA downstream 35806 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 190656 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 192738 12874551 ~ 12878653 (-) True G77135
TU113780 lncRNA downstream 392173 12679007 ~ 12679218 (-) False uvrag
TU113778 lncRNA downstream 392766 12678367 ~ 12678625 (-) True G76912
TU114230 lncRNA upstream 126364 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 228942 13313194 ~ 13315574 (-) True G77220
TU114273 lncRNA upstream 244390 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 402015 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 416551 13500803 ~ 13505849 (-) False dclk1a
XM_043249939.1 mRNA downstream 674 13060712 ~ 13070717 (-) False prdm15
XM_043249938.1 mRNA downstream 674 13060712 ~ 13070717 (-) False prdm15
XM_043249936.1 mRNA downstream 674 13060712 ~ 13070717 (-) True prdm15
XM_043250777.1 mRNA downstream 11256 13056071 ~ 13060135 (-) True tbl2
XM_043250779.1 mRNA downstream 16015 13052114 ~ 13055376 (-) True bcl7ba
XM_043251152.1 mRNA upstream 10331 13094583 ~ 13098870 (-) True ska2
XM_043250502.1 mRNA upstream 67703 13151955 ~ 13156088 (-) True il2rga
XM_043250501.1 mRNA upstream 71892 13156144 ~ 13161519 (-) True si:dkey-18a10.3
XM_043250500.1 mRNA upstream 80457 13164709 ~ 13169215 (-) True eva1c
XM_043250499.1 mRNA upstream 80462 13164714 ~ 13169212 (-) False eva1c
TU113815 other downstream 282301 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 1866165 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 454477 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 559039 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 721867 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1118010 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1118010 14202262 ~ 14202837 (-) False G77440

Expression Profile