RNA id: XM_043250759.1


Basic Information

Item Value
RNA id XM_043250759.1
length 2840
RNA type mRNA
GC content 0.48
exon number 42
gene id vps11
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11713900 ~ 11719645 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACATGATTTTGCTAAACAAGAACTGCTTGGAAAATGGCAGCGTTCTTACAGTGGAGACGTTTTGTGTTTTTCGATAAAGAAACGGTGAAAGATACGAGCGAGCGAAAATGGGAAAATTTCCAACTACCGGTGGGAATTGCGGCCTGTGATTCAGGTCGAGGACACATTGTGCTTGGAGATATGGATGGGCAGATCTGGTTGACCCACTCCCTGCAACTGTCTAGTTTTCAGGCTTACAAACTGCGTGTGACACACCTGTACCAGCTGAAACAACACAACATCCTGGTATCTGTGGGTCAGGATGAGCCTGGCATCAATCCTCTGGTTAAGGTGTGGAACCTTGATAAGAAGGACAGCGGCAGTCCTCTTTACCGGATATTTCCTGCCATACCTGGAAACAAACCTACTGAAGTGTCTTGTCTAAGTGTACATGAAAACCTTAATTTCATGGCTATAGGCTTCACAGATGGCAGTGTTGCTGAATGGACGTAAGGGGGTGACATCACCAGAGACAGACACAGTAAAACTCTCAGCCTCCATGAAGGCAACTGTCCAATCACAGGCCTGGCTTTCCGGCAGGCTGGCAAAGTCACAAGACCTGTTTGCTTCGCCACTTTAGAAAAAGTGCAGTGTTACACATTATCCAATGAAAGAGTACCCTCGGTATCAGAACTGGACACACACGGCTACGCCCTCCGCTGCTCGCTCACAGACCCTTCGCAGGACTCACAGTTCATAGTGGCTGGAGATGATCACGCGGTGTACTTGTACCAGCCCGATGAGAGAGGACCCTGTTTACGCTTCGATGGGCGCATAAACTTAACTCACTGGCACACAGGATACCTGCTGCTGCTCACCCACAACAACAAATCACCCAGCAAATCTGATTATGGCGGCAGACAGATCCCTACAGAAAAGCACATCCTGACCATTTACGACCTTTTGACAACAAGTTCATAAACACAGTGCGGTGTTGATGATGTCATTGACGTTCTGGCAGCATGGGCCGTTTTCACGATCCTAACGAGGGACAGAACGCTGTATATGCTGCAGGAAAAAGACACGCAGACTAAGCTAGAGATGCTGTTTAAGAAGAACCTGTTTGTGATGGCCATTAACTTGGCTAAAAGTCAGCATCTGCACAATGATGGTCTGTCTGAGATATTCAGACATTATGGAGACCATCTCTATGTCAAAGGGCAAGGTGATGGAGCTATTCAGCAGTATATTCGAGTCATTGGGAAGCCTCGAACCTCATAATGTAATCAGAAATTTTTGGATGCACAGAGGATACATAACCTGACAAGCGTGCACCTACAGGCTCTCCACAGACAGTCGCTGGCCAATGCTGACCACACTACTCTACTGCTCAACTGTTACACCAAACTGAAGGACAGCTCCAAGCTGGAAGAGTTCATAAAGAGCAATGAAAGCGAGGTGCATTTTGATGTTGAGATTGCCATCAAGGTGTTACGCCAGGCAGGTTATCACAAGTCAACGCCGTGTTTCTGGCAGAGACACATGCACCATGAATGGTATCTAAAGATCCAGCTTGAGGATTTAAAGAATTATCAGGAGGCTTTACGCTATATTGGAAGGTTGCCATTTGATCAAGCAGAGAGAGTAATGAAGCGTTACGGAATTTTAATGCATCATGTGCCTGAAAGCACCACTATCCTCTTAAAACGCCTTTGCACTGACTATCACCCCAGCAAAGACTCAACCGACAGGGACAGTCTGGACAGGCCTGCAGAAAACAAGGCCAATCCCAGGAAGGAGTTCATCCCAGTATGCAATAACCCACGAGAGCTGCGAGCGCTCCTGGAACACATGATTGAAGTGGATCCGTTCTCACCTGAGGGAGTTTATGACACTCTGCTAGAGCTCAGACTTCAGGACTGGGCACATGAGCAGGACCcagAGAAGAAGAAAGTCCTGCAGGAGGCAGCACTGTCCCTGCTGAGGAGCGACAACACCGTGTTTGACAAAGCCCTGGTGCTCTGCCAGATGCACAACTTCAAGGAAGGAGTGCTGTATCTGTATGAAAAGGGCAAACTGTACCAGCAGATCATGCATTACCACATGCAGAATGAGGAGTATGGAAAAGTCGTGGAGGCCTGTAAACGCTATGGGGACAGTGAAGTGTGTTTGTGGGAACAGGCTCTCCAGGCTATTTTGcacataaagaaagaaaactgtaaGGCCTACATTAGTGAAGTCCTGCAGCACATTGATGAAAACAACTTGATGCCTCCACTTCTGGTGGTGCAGACTTTGGCTCATAATTCCACAGCATCTCTCTCAGTCATAAAAGACTACCTGATAAATAAACTGGAGCGAGACCAACTTGAGATCGaggaagatgaaagaaagattcGACAGTATAGAGAGAAACGCCCACCTTCTCGAGCTGAGATACAGGAACTTAAAACCTGTGCAAAGATCTTCCAAAAGACCAAGTGCAGCATGTGCAACAGCCCACCAGAGCTGCCGGGCGTGCACTTCCTCCTGTGCGGGCACACTTTCCATCAGCACTGCCTGGAGAGCTTTGTAGAGAGCGAGGCCGAGTGCCCCACCTGCACCCCTGAGAACAGGAAAGTGATGGACATGCTTTGGGTGGCGCAAGATCAGAAACGCAGATTTCATGATCATTTTCTTACAGACAGCTCAAATGTTTAACGACGCTTCTCTGTCAATGACTATTTTGGTCGTGGAGTAGCTTAACAACAAACTCACTCTCTGATTACGGATCTCCAGGAGGTGGCAAGAGTGTGAGCTGGCAATCTGGAGGCTGAATTAAACAGGGATCTGCCTATTAACACCAAGAGAAATGTTTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048794 swim bladder development biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0003407 neural retina development biological_process
GO:1902362 melanocyte apoptotic process biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0001889 liver development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113507 lncRNA downstream 128940 11505310 ~ 11584960 (-) False ccdc83
TU113502 lncRNA downstream 227472 11485906 ~ 11486428 (-) True G76693
TU113433 lncRNA downstream 423060 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA downstream 478210 11234372 ~ 11235690 (-) True G76662
TU113412 lncRNA downstream 603065 11096963 ~ 11110835 (-) True G76642
TU113585 lncRNA upstream 42072 11761717 ~ 11766210 (-) False G76755
TU113586 lncRNA upstream 42072 11761717 ~ 11766210 (-) False G76755
TU113587 lncRNA upstream 42072 11761717 ~ 11766210 (-) True G76755
TU113588 lncRNA upstream 42072 11761717 ~ 11766210 (-) False G76755
XR_006251968.1 lncRNA upstream 728897 12448542 ~ 12453651 (-) True LOC122353234
XM_043249836.1 mRNA downstream 2302 11709431 ~ 11711598 (-) True ift46
XM_043250948.1 mRNA downstream 180895 11530837 ~ 11533005 (-) True tmem126a
XM_043250947.1 mRNA downstream 181414 11530837 ~ 11532486 (-) False tmem126a
XM_043250114.1 mRNA downstream 203436 11506201 ~ 11510464 (-) True ccdc83
XM_043250856.1 mRNA downstream 247062 11458833 ~ 11466838 (-) True zpld1a
XM_043250890.1 mRNA upstream 11478 11731123 ~ 11744558 (-) True si:ch73-261i21.5
XM_043250357.1 mRNA upstream 27562 11747207 ~ 11748057 (-) True LOC122352762
XM_043250354.1 mRNA upstream 30320 11749965 ~ 11754201 (-) True zpr1
XM_043250865.1 mRNA upstream 61851 11781496 ~ 11784153 (-) True bsx
XM_043250981.1 mRNA upstream 66765 11786410 ~ 11787673 (-) True lim2.1
XR_006251915.1 other downstream 506648 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 508673 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 508674 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 508674 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 508674 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1062708 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 1819084 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 1923646 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2086474 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2482617 14202262 ~ 14204127 (-) True G77440

Expression Profile