RNA id: XM_043250812.1


Basic Information

Item Value
RNA id XM_043250812.1
length 5449
RNA type mRNA
GC content 0.52
exon number 28
gene id robo3
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12311190 ~ 12430879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGCCCGTAGACTCGAGAGTAGTAAATCCGTTCATTCACAGCTAGGAGAAGAGTGCGGGGCAGCGGAGACGGAAATCTGACTGAATGGGCTATTAAAGATACGGATACTTTTTCaaggaaaggaaaagagaaagaaagcgaGAAAAGAAACATGTTTTGCCTGTGAAATGAATCTTGAAGGAAGTAAGAGCTGCCGGGACGGACTGTGAGCATCACATCTTGTCTGTCCGTTACATTGACTCTTTATCTGTACAGATCAGCGCTCGAGCGCACGGGGAGCGCACGGCAAATATGGAGTATTTGTGATGCTCAGATTGTCCTTcccagtttttgtgttttgggtCTAGTTTGTAAAGTTCTTCAATGTGACCGACCGTCCAGACGCGTCTCCTCGCACTTCAAGCGGATTGCAGCGCTTTTGGGGTGGTTTTAAGGACTGTTTGTACGGATAAAGGCGGCTGAGGCGGACTTTATATTTGGGGGTGATGGAGTTTCGCAGGACTTTAGATGCGTTGCTCGTTGTGTTTGCCATCATCTGCTTGTCTCAAGGATCACGGCCGAGGTTAGAAGATGCCGCGCCACGGATTGTCGAACACCCCTCAGACCTCATTGTTTCTAAGGGCGAGCCCGCCACGTTGAACTGTAAAGCCGAAGGTCGGCCGACCCCTATGGTGGAGTGGTACAAAGATGGCGAAAGAGTCGAAACGGACCGTGAGGATCCACGCTCCCACCGCATGCTCCTCCCCAGCGGTTCCCTCTTCTTCCTCCGAATCGTTCACGGAAGACGCAGCAAGCCTGACGAAGGAGTGTACGTGTGTGTAGCGAGGAATTACTTGGGCGAGGCCGTTAGCCGTAATGCCTCTTTGGAGGTCGCAATTCTCCGGGATGATTTTCGACAAACCCCCAGTGATGTGGTGGTGGCAGCAGGGGAGCCGGCAGTGATGGAGTGCATCCCTCCACGGGGCCACCCAGAACCCACTATCTCCTGGAAGAGGAACAACGTGAAAGTGAACGACAAGGACGAGAGGATAACGATCCGTGGAGGGAAGCTGATGATCTCAAACACAAGGAAGAGCGATGCtggaatgtatgtgtgtgtcggCACTAATATGGTTGGAGAGAAGGACAGCGACCCTGCTGAGCTTGTAGTGTTTGagAGACCCATGTTTGTACGCAGACCTGTGAATCAGGTGGTCCTCGCCGATGACACGGTGGATTTTCAGTGTGAGGTTCAGGGAGACCCCACTCCCACCATACGCTGGAGAAAAGAGGAAGGAGAACTGCCTCGGGGAAGGTTTGAGATCCGTGCCGACAACAGCCTGCGTCTTACTCAGGTGAAGGCTGAAGATGAAGGCTCTTACACCTGTTTATCTGAGAACAGCGTGGGCAAAGCCGAAGCATCCGGAACACTTCAGGTCCACGTGGGCCCATCTCTTCCTCCTCAGATCGTGGTGCGTCCGCGGGATCAGATCTCCGCCCAAGGCCGTACTGTCACCTTTCTTTGTGGAACGAAGGGAAATCCCCCTCCTGCTGTGTTCTGGCAGAAGGAAGGCAGTCAGGTCCTGCTGTTTCCCAGTCAGCCACCTTCACAGTCAGGCCGTTTTTCCGTGTCGTTAAGCGGAGAGCTGACCATTACAGATGTGCACAGCGAGGATTCTGGGTACTACATCTGCCAGGCCATCAGTGTGGCAGGCAGCATCTTGACCAAAGCCCTGCTGGAGGTGGAAAGCACCCCATCTGACCGGATCCCTCCCATCATCCGCCAAGGACCAGCCAACCAGACACTCGCTCCGGGCACCACGGCCCAATTGCAGTGTCACGTGATGGGCAACCCTCTTCCGAGCATCCAATGGGAGCGCGACGGCCAGAGAATCCTGGGCAACGACGAGCGCATTAGCCTAATGGAAAACGGCACTTTACAAATCACAGCCCTGCAGGAAACGGACTCCGGGGCCTACACCTGTGTTGCCTCCAGTTTGAGTGGAGAGACGAGCTGGAGTGGTGTACTCAcagtaaaagAGAGTGGCGGCCTCTCAGCACCCCCGGTTTCAGAGCCATACCAGCTGCCCGGTCCACCCCAAAAGCCCGTCGTCACTGATGTGACCCGTAACAGCGTGACCCTGACCTGGCAACCAAACGCGCACGAAGGCGGAGCGGCTGTCACCTCTTACATCATTGAGGCTTTTAGCCAATCGGCAGGCAGTACTTGGCAGACGGTTGCGGATTTTGTGAAGCTGGAGAAGCACACGGTCACGGGTCTGTCGCCGAATACCATCTACCTGTTCATCGTGCGGGCGGTCAACGCTTACGGCCTGAGCGACCCCAGCCCCATCTCAGAGCCTGTACGCACACAAGATGTGAGTCCTACAGGTCAAGGTGTGGACCATCGCCAGGTGCAGAGGGAGCTGGGAGAGATGGCTGTACAGCTTCACGAGCCAACGCTGGTGACAGCATCCAGCGTGAAGATCAGCTGGAACGTCGATCGTCAGTCTCAGTACATCCAGGGTTATCGTTTGCTTTATCGTCCTGTCGGCGGCTCCTGGTCCCAGCAGGAAGTGAAAGCTGCAACAGAGCGTAGCGCTGTCATCGCTAACCTGCTCAAAGGCACGGAGTACGAGATTAAAATACGACCCTACTTTAACGAGTTCCAGGGCATGGACAGCCGCCCGCTGACGTTTCGCACGCCAGAGGAAGTTCCCAGTGCCCCCCCTCGTGCTGTAACCGTGGCAACGGTCAAGCTCAGCAACAGCTCAAGCATCAGTGTATCATGGCAGCCTCCTCCCACTGAGATGCAAAATGGAGTCATCCAAGAGTATAAGgtTTGGTGTCTGGGTAATGACTCTCAGACGCGCTACCACATCAATCAGACGGTGGATGGAAGCGTGCTGACAACTTTATTAAAGGGGCTTCTACCTGGTGTGTTGTACCAGGTGGAGGTGGCGGCAGTGACCAGCGCAGGAGTGGGCACACACAGCCAGCCCGTATCTGTGCTTATCAAATTGCCTGCAGAGCAGCCTACAGTCACAGGTGGAGGCAGCGAATCTGACGAGAATGTAAGTCTGGCTGAGCAGATCACAGACGTAGTGAAGCAGCCTGCCTTCATCGCAGGCATTGGCGGGGCATGCTGGGTAATCCTTATGGGATTCAGCGTGTGGATCTACTGCAGACGGAAGAAGAGAAAAGAGCTCAGCCATTACACAGCATCATTTGCATACACACCTGCGGTTGGTTTCCCACATGGAGAAAGTTCTGGACTTAATGGACGGCCTGGTATGCTGGGTGCTAACATGGGAAATTACCCATGGCTGGCTGATTCTTGGCCAACTACCAATCTTGTGCACAACGGGAAAGACTCTGTGAACTGCTGTACATCTAAACATGACACCCCGGAGAGATACTATAATGAGGCGGGAATCTCTAATTACCTCAACCAAAACGAGAAGTACAGCACAGACTCCAACGAGGGCCCGATATACAGCACCATTGATCCCACCAGCGAGGACCTGCGCAGTTTCTCTGCTCAGTTCTCTCAGCATACCACTCCCTACGCAAGCACTCCCATCATGCCTTTCACCAACCAGGCGCCCTGCAGCCCTGAACAAGATGGCAGCCACTGGATGACTCAGCCTGGAACCTCCAATGCTCAGTATGCCCAGCCAGACCGCTCCAAGACTGATAATGTAAAACAGCCAAAGCAGAAGTTAATGGGGAAGCCAGTGAAAACGCCATCTCTCAACTGGATGGATGCGTTGCCACCACCACCTCTCTCTGGAGATCTAGACGAgtgtgaagaggaagatgatAATGAACTAATCCAGGACATGGGGTCTGATGAGGAAGAGTGGTGTCCTCCTCTTCCTGACAGGACTTACCTCATGGATGGCGTGATGGAAGACGGTCCCGCTCCTCCTCCTAGAGGAGAGGCTTCTTCCCCCACCACATCCTACAGCCACCAGTCCACCGCCACCTTAACCCCGTCTCCCAGAGACGATGGCCACTGCCACGATATACCACGCTTGCACCAGCTGGAACAGCCACAGATAGCACGcCGGTTGCCTTGTGGACCTGTGCCTGTGCCACGAGCACCAAGCCCGCCTCTAACCCAGTCCAACCCAAACCTGTCGGCCAATCAGGAGTGCCCTGACAACACTGTGCCACACCGCTCAGCGCACAAACGGGATCTGAGCCAAGGAGCTGCCCAAAGTGTAGAGAACATCAGCAACACCACACCAGGTCGAGCGAGGCCCTCTGTGGACCACACACCGCCTGGGCAGAAGTCCAAAGTGAAGAAGAAAACCTCCAAGAGCGGTCAATACCGAAGAGATATACTGCAAGGCGATCTGCCCCCTCCACCAGAGCCGCCTCCTGAAGATGAGGTGGACTGTGCTCAAGTAGGGGGATTCGAATGTGGGCAGACGTCCCTCGAGAGAGTGGGCAGCTCCCATTCCTCCATGGAGAGGAGAGAACAGGGCACACCCAATCGGAAAAACTCCTCTCATAGACGAATAGACGCAGAAGATGATTTAATCCCGTACAACAAGCCCAACTTCCTGTCTCGGGGTCAGATGTCCAGCAATTGCTCCACAACAGGAAGTTCATCATCACGGGGGTCAACAGGATCACGGGGGCACGGAACGGGCAGGAAGAGAAATGATGAGATGAGATAAGGGAAGGCTGTGAGACGCAGGAAGTTTGACTTAGACATCCCTCTGTTTTTGTTCGGAAGCTGAAGTGAAGAACCGAAGAGAAGCGGAAGAGTGTACAGATTTCAGAACGTGAATCTGGGACTTTTGattatgttattaattattgttattattgttatttatgacCTTCATGGGGGCATTTTTCATCACGCTGTCACTGTAAATAATCATCCGTTGAAGCTTTTTACATGGGGTCCAGATGCCAGGAAAGAAGagtatattgtatttatacatgAAAGAAGAAATGAAATCATGTTAAAAGCTCCGATATTATAGATAAGTTAATGTCTGAATGTGCCAACCTCTTGTAGAAATGTATACAGCAGCATTTCAAAGCATAATAATATTGCACTCTCGTTGTGTtggagaacaacaacaaaaaaaaaaataaaaaatagaaagcaCAATATGTGTTGTTTGACCAGCCAGCTAGACAGCCAGCCTCACGACCTATCTGAGCCGAGGACGCTTCTGTCTGTCCGTCTCGTCTCTGTCTGTGGATCCCCGTCGTTGCGGTCACAAGAGAATGTggtcttttttccccctctttcttTTCAAAGCCAAGAGAGTGTCATTTGACGACTGTTGTGAACGATTgtacttgtctttttttaaggAGTGTTTTGGAGATGTGAGGAAAtgtatttcattcaaaaaaaataccaaaattaCGTTCCTTTGACTAACTTTTTGGTAGTCCTTgttgttttgtataaataaaatacatttgctgaGCTATGAA

Function

GO:

id name namespace
GO:0048264 determination of ventral identity biological_process
GO:0016199 axon midline choice point recognition biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113584 lncRNA downstream 544980 11701871 ~ 11766210 (-) False G76755
XR_006251968.1 lncRNA upstream 71277 12448542 ~ 12453651 (-) True LOC122353234
TU113766 lncRNA upstream 227954 12605219 ~ 12610098 (-) True G76902
TU113778 lncRNA upstream 301102 12678367 ~ 12678625 (-) True G76912
TU113780 lncRNA upstream 301742 12679007 ~ 12679218 (-) False uvrag
TU114135 lncRNA upstream 419399 12796664 ~ 12880735 (-) False G77135
XM_043249837.1 mRNA downstream 27603 12217090 ~ 12283587 (-) True LOC122352422
XM_043249820.1 mRNA downstream 125094 12065931 ~ 12186096 (-) False opcml
XM_043249818.1 mRNA downstream 182287 12065931 ~ 12128903 (-) True opcml
XM_043250981.1 mRNA downstream 523517 11786410 ~ 11787673 (-) True lim2.1
XM_043250865.1 mRNA downstream 527037 11781496 ~ 11784153 (-) True bsx
XM_043250469.1 mRNA upstream 114405 12491670 ~ 12500849 (-) False fez1
XM_043250468.1 mRNA upstream 114405 12491670 ~ 12500847 (-) True fez1
XM_043250281.1 mRNA upstream 127747 12505012 ~ 12509908 (-) True vps26bl
XM_043250581.1 mRNA upstream 301725 12678990 ~ 12769416 (-) False uvrag
XM_043250579.1 mRNA upstream 302472 12679737 ~ 12769417 (-) False uvrag
XR_006251915.1 other downstream 1103938 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 1105963 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 1105964 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 1105964 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 1105964 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 405088 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 1161464 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 1266026 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 1428854 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1824997 14202262 ~ 14204127 (-) True G77440

Expression Profile